Wall clock time and date at job start Sun Mar 29 2020 23:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47495 * 2 1 4 4 C 1.52995 * 109.47406 * 239.99388 * 2 1 3 5 5 C 1.50698 * 109.46819 * 60.00316 * 4 2 1 6 6 H 1.07997 * 120.00432 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99937 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00238 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00007 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47028 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47358 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47353 * 240.00188 * 9 7 5 13 13 C 1.53000 * 109.46749 * 119.99763 * 2 1 3 14 14 N 1.46905 * 109.47234 * 299.99879 * 13 2 1 15 15 C 1.46902 * 110.99800 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.46626 * 180.02562 * 15 14 13 17 17 C 1.53777 * 113.61386 * 274.13193 * 16 15 14 18 18 C 1.53950 * 87.02290 * 220.05104 * 17 16 15 19 19 C 1.53002 * 113.53668 * 270.81621 * 18 17 16 20 20 C 1.53001 * 113.74480 * 139.94446 * 18 17 16 21 21 C 1.53780 * 113.61053 * 176.52548 * 16 15 14 22 22 H 1.09001 * 109.46815 * 300.00652 * 1 2 3 23 23 H 1.09002 * 109.46581 * 60.00311 * 1 2 3 24 24 H 1.08993 * 109.47272 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46910 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.46495 * 299.99736 * 3 2 1 27 27 H 1.09001 * 109.47163 * 59.99568 * 3 2 1 28 28 H 1.08994 * 109.47497 * 180.02562 * 4 2 1 29 29 H 1.09004 * 109.47471 * 300.00627 * 4 2 1 30 30 H 0.96994 * 120.00350 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47089 * 179.97438 * 13 2 1 32 32 H 1.09001 * 109.47170 * 59.99649 * 13 2 1 33 33 H 1.00898 * 110.99743 * 303.95080 * 14 13 2 34 34 H 1.08993 * 109.47737 * 60.00169 * 15 14 13 35 35 H 1.09000 * 109.47263 * 299.99731 * 15 14 13 36 36 H 1.08998 * 112.84948 * 45.33067 * 16 15 14 37 37 H 1.08999 * 113.61825 * 334.57628 * 17 16 15 38 38 H 1.09009 * 113.61337 * 105.47075 * 17 16 15 39 39 H 1.09007 * 109.47013 * 157.49311 * 19 18 17 40 40 H 1.08998 * 109.47014 * 277.48731 * 19 18 17 41 41 H 1.08998 * 109.47348 * 37.49007 * 19 18 17 42 42 H 1.08999 * 109.46898 * 322.40347 * 20 18 17 43 43 H 1.08997 * 109.47016 * 82.40386 * 20 18 17 44 44 H 1.08996 * 109.46824 * 202.40468 * 20 18 17 45 45 H 1.08992 * 113.61837 * 254.52753 * 21 16 15 46 46 H 1.09001 * 113.61413 * 25.43567 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9172 0.8673 -2.3807 7 6 1.8705 -0.4825 -3.7319 8 7 2.6257 -1.5523 -3.8525 9 14 1.2485 0.3985 -5.2572 10 1 0.4239 1.5655 -4.8531 11 1 2.4038 0.8642 -6.0655 12 1 0.4227 -0.5343 -6.0654 13 6 2.0399 -0.7212 1.2493 14 7 1.5502 -0.0286 2.4487 15 6 2.0217 -0.6944 3.6704 16 6 1.4920 0.0535 4.8956 17 6 2.3787 1.2332 5.3280 18 6 2.1061 0.8014 6.7804 19 6 0.8594 1.4490 7.3865 20 6 3.3304 0.9006 7.6927 21 6 1.8600 -0.6138 6.2313 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6768 1.9562 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 3.1300 -0.7218 -1.2489 29 1 1.6767 -1.7490 -1.2491 30 1 2.8601 -1.8837 -4.7334 31 1 3.1299 -0.7216 1.2491 32 1 1.6765 -1.7489 1.2494 33 1 1.8198 0.9436 2.4402 34 1 3.1115 -0.6939 3.6871 35 1 1.6585 -1.7220 3.6875 36 1 0.4358 0.3091 4.8115 37 1 3.4217 1.1278 5.0296 38 1 1.9617 2.2083 5.0758 39 1 0.4979 0.8375 8.2134 40 1 1.1089 2.4447 7.7530 41 1 0.0832 1.5259 6.6251 42 1 4.2216 0.6074 7.1378 43 1 3.4410 1.9272 8.0419 44 1 3.2005 0.2378 8.5482 45 1 1.0250 -1.1277 6.7073 46 1 2.7610 -1.2251 6.1803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309328362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:48 Heat of formation + Delta-G solvation = -32.251222 kcal Electronic energy + Delta-G solvation = -19193.998813 eV Core-core repulsion = 16503.100423 eV Total energy + Delta-G solvation = -2690.898390 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.73570 -39.04192 -35.76084 -34.21086 -31.68836 -29.05401 -28.25246 -27.89560 -27.50733 -26.61820 -25.70661 -23.77474 -21.49608 -19.47067 -19.11573 -18.33796 -17.02193 -16.58832 -15.98204 -15.75850 -15.51134 -15.04397 -14.87762 -14.75251 -14.27955 -13.95430 -13.90772 -13.56813 -13.54080 -13.23517 -12.88717 -12.71961 -12.68043 -12.65233 -12.45126 -12.26101 -12.21469 -12.15468 -11.90360 -11.56730 -11.39893 -11.36922 -10.96651 -10.87910 -10.81921 -10.55859 -10.51446 -9.27343 -8.14222 -6.21319 1.40181 1.41093 1.53498 2.43724 3.19677 3.26273 3.63274 3.76085 3.83931 3.96365 4.14232 4.22164 4.34512 4.39586 4.53183 4.56568 4.73075 4.76699 4.80309 4.81170 4.87428 4.92921 4.94212 4.96439 5.02510 5.06771 5.08227 5.09073 5.21208 5.21674 5.22620 5.30644 5.37043 5.51468 5.53715 5.58344 5.60185 5.65844 5.71932 5.87265 5.92730 6.13643 6.37362 6.57710 6.94076 7.46086 8.98494 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.052297 B = 0.003402 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.275776 B = 8228.198462 C = 8341.251343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.057 4.057 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.067 0.933 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.082 3.918 14 N -0.681 5.681 15 C 0.069 3.931 16 C -0.101 4.101 17 C -0.131 4.131 18 C -0.086 4.086 19 C -0.127 4.127 20 C -0.134 4.134 21 C -0.124 4.124 22 H 0.067 0.933 23 H 0.039 0.961 24 H 0.029 0.971 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.067 0.933 28 H -0.017 1.017 29 H -0.017 1.017 30 H 0.260 0.740 31 H 0.014 0.986 32 H 0.054 0.946 33 H 0.343 0.657 34 H 0.024 0.976 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 5.944 22.536 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.057 4.057 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.085 0.915 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.048 4.048 14 N -0.313 5.313 15 C -0.060 4.060 16 C -0.120 4.120 17 C -0.168 4.168 18 C -0.086 4.086 19 C -0.184 4.184 20 C -0.192 4.192 21 C -0.162 4.162 22 H 0.086 0.914 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.001 0.999 29 H 0.001 0.999 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.038 5.521 22.425 23.184 hybrid contribution 1.032 0.032 -1.371 1.716 sum -1.006 5.553 21.054 21.797 Atomic orbital electron populations 1.21490 0.94239 1.00040 1.00528 1.20510 0.96375 0.95659 0.93162 1.21672 0.99378 0.95582 1.01200 1.19008 0.93891 0.94076 0.92797 1.21654 1.30143 1.11896 0.91415 0.91530 1.25941 0.95719 0.95919 1.02640 1.70115 1.38970 1.24963 1.23991 0.85505 0.78127 0.78818 0.79277 1.18389 1.20779 1.20845 1.21811 0.95617 0.97493 0.89847 1.60527 1.63395 1.06560 1.00807 1.21970 0.96473 0.98303 0.89286 1.22456 1.00113 0.96730 0.92705 1.23201 0.99498 0.98207 0.95939 1.21790 0.96511 0.96064 0.94258 1.21594 0.95784 1.00470 1.00598 1.21719 0.96318 1.01948 0.99176 1.23059 1.01612 0.96155 0.95351 0.91382 0.94226 0.95194 0.94554 0.93380 0.91431 0.99878 0.99867 0.93160 0.96768 0.92774 0.83777 0.95770 0.91935 0.88915 0.90729 0.91461 0.91896 0.91995 0.92636 0.92935 0.92289 0.92127 0.91099 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 2 C -0.06 -2.30 0.60 -52.18 -0.03 -2.34 16 3 C -0.12 -4.44 7.89 71.98 0.57 -3.88 16 4 C 0.04 2.11 4.04 29.85 0.12 2.23 16 5 C -0.51 -28.77 7.65 25.60 0.20 -28.57 16 6 H 0.07 3.58 5.68 -2.91 -0.02 3.56 16 7 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 8 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 9 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 13 C 0.08 2.90 4.65 86.30 0.40 3.30 16 14 N -0.68 -19.25 5.71 -513.86 -2.94 -22.18 16 15 C 0.07 1.65 5.51 86.31 0.48 2.13 16 16 C -0.10 -1.95 3.54 -10.27 -0.04 -1.99 16 17 C -0.13 -2.29 6.76 31.18 0.21 -2.08 16 18 C -0.09 -1.30 1.39 -51.59 -0.07 -1.37 16 19 C -0.13 -1.72 9.07 71.98 0.65 -1.06 16 20 C -0.13 -1.81 9.20 71.98 0.66 -1.14 16 21 C -0.12 -2.04 6.79 31.12 0.21 -1.82 16 22 H 0.07 2.29 7.60 -2.39 -0.02 2.27 16 23 H 0.04 1.63 6.62 -2.39 -0.02 1.61 16 24 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.91 6.62 -2.39 -0.02 1.90 16 27 H 0.07 2.01 6.57 -2.39 -0.02 2.00 16 28 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 29 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 30 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.34 9.08 6.77 -89.70 -0.61 8.47 16 34 H 0.02 0.59 7.88 -2.39 -0.02 0.57 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.90 7.66 -2.39 -0.02 1.89 16 37 H 0.07 1.36 7.75 -2.39 -0.02 1.34 16 38 H 0.07 1.17 8.10 -2.38 -0.02 1.15 16 39 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.05 0.80 7.34 -2.39 -0.02 0.78 16 42 H 0.05 0.73 7.96 -2.39 -0.02 0.71 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 46 H 0.08 1.31 8.06 -2.39 -0.02 1.29 16 Total: -1.00 -62.13 351.04 4.07 -58.06 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.30 Total: 15.01 kcal Atomic # 6 Polarization: -44.38 SS G_CDS: 4.40 Total: -39.98 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.65 Total: -79.97 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -62.13 4.07 -58.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309328362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.804 kcal (2) G-P(sol) polarization free energy of solvation -62.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds