Wall clock time and date at job start Sun Mar 29 2020 23:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30530 * 1 3 3 Si 1.86791 * 120.00242 * 2 1 4 4 H 1.48503 * 109.47297 * 274.98763 * 3 2 1 5 5 H 1.48502 * 109.47078 * 34.98617 * 3 2 1 6 6 H 1.48497 * 109.47308 * 154.98914 * 3 2 1 7 7 C 1.40351 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99990 * 186.10137 * 7 2 1 9 9 C 1.41799 * 120.00300 * 6.10436 * 7 2 1 10 10 O 1.21781 * 120.00136 * 353.20616 * 9 7 2 11 11 C 1.47772 * 120.00280 * 173.21556 * 9 7 2 12 12 C 1.39786 * 120.14403 * 179.97438 * 11 9 7 13 13 C 1.37837 * 119.84868 * 180.30010 * 12 11 9 14 14 C 1.38569 * 120.14455 * 359.44186 * 13 12 11 15 15 Br 1.89105 * 119.85109 * 180.28198 * 14 13 12 16 16 C 1.38574 * 120.29366 * 0.56002 * 14 13 12 17 17 C 1.37837 * 120.14074 * 359.72312 * 16 14 13 18 18 H 0.97003 * 119.99777 * 0.02562 * 1 2 3 19 19 H 1.07991 * 120.07248 * 0.02562 * 12 11 9 20 20 H 1.08001 * 119.91895 * 179.72386 * 13 12 11 21 21 H 1.07994 * 119.92690 * 179.70111 * 16 14 13 22 22 H 1.08001 * 120.07143 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6176 0.0000 4 1 2.3815 2.1072 -1.3948 5 1 1.4935 2.6199 0.8028 6 1 3.5856 1.4119 0.5919 7 6 2.0070 -1.2155 -0.0005 8 1 3.0824 -1.2183 0.0989 9 6 1.3040 -2.4400 -0.1317 10 8 0.0863 -2.4474 -0.1194 11 6 2.0490 -3.7072 -0.2830 12 6 1.3590 -4.9160 -0.4120 13 6 2.0600 -6.0951 -0.5466 14 6 3.4455 -6.0826 -0.5659 15 35 4.3989 -7.7043 -0.7590 16 6 4.1356 -4.8877 -0.4385 17 6 3.4467 -3.7022 -0.2974 18 1 -0.4850 0.8401 -0.0004 19 1 0.2791 -4.9265 -0.4017 20 1 1.5281 -7.0302 -0.6418 21 1 5.2155 -4.8854 -0.4495 22 1 3.9857 -2.7716 -0.1978 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000251883.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:20 Heat of formation + Delta-G solvation = -40.836891 kcal Electronic energy + Delta-G solvation = -10897.681818 eV Core-core repulsion = 8655.808470 eV Total energy + Delta-G solvation = -2241.873348 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 253.968 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.31803 -38.24085 -34.85113 -33.26951 -32.08390 -30.56871 -28.62161 -24.36301 -23.53238 -21.47587 -18.68636 -18.02355 -16.75913 -16.16214 -15.84098 -15.01731 -14.72380 -14.66813 -14.42650 -13.71430 -13.36363 -12.78474 -12.65168 -12.46210 -12.06402 -11.92312 -11.68381 -11.24592 -11.01673 -9.98174 -9.67765 -9.54849 -8.40169 -7.12325 -0.09889 0.40424 0.59417 1.37695 1.39369 1.56863 2.11128 2.20109 2.74816 3.65554 3.87447 3.98452 4.13645 4.45471 4.47645 4.75291 5.01668 5.13733 5.22775 5.32126 5.62971 5.84941 5.95277 6.65302 6.72257 8.18132 8.43606 Molecular weight = 253.97amu Principal moments of inertia in cm(-1) A = 0.062577 B = 0.005299 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.339409 B = 5282.762921 C = 5717.429116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.021 3.979 3 Si 0.998 3.002 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.242 1.242 7 C -0.537 4.537 8 H 0.100 0.900 9 C 0.356 3.644 10 O -0.596 6.596 11 C -0.122 4.122 12 C -0.105 4.105 13 C -0.096 4.096 14 C -0.097 4.097 15 Br -0.038 7.038 16 C -0.094 4.094 17 C -0.090 4.090 18 H 0.284 0.716 19 H 0.115 0.885 20 H 0.151 0.849 21 H 0.160 0.840 22 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.845 -10.538 -1.443 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.198 4.198 3 Si 0.816 3.184 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.165 1.165 7 C -0.567 4.567 8 H 0.118 0.882 9 C 0.257 3.743 10 O -0.491 6.491 11 C -0.124 4.124 12 C -0.124 4.124 13 C -0.115 4.115 14 C -0.177 4.177 15 Br 0.047 6.953 16 C -0.114 4.114 17 C -0.109 4.109 18 H 0.094 0.906 19 H 0.133 0.867 20 H 0.169 0.831 21 H 0.178 0.822 22 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.468 -11.135 -1.506 16.056 hybrid contribution -0.446 1.020 0.048 1.114 sum 11.023 -10.115 -1.458 15.031 Atomic orbital electron populations 1.70102 1.10098 1.30107 1.31031 1.27337 0.95517 1.05783 0.91206 0.84993 0.79308 0.74513 0.79584 1.18446 1.19365 1.16486 1.21504 0.96779 0.92208 1.46214 0.88189 1.18904 0.88270 0.88197 0.78966 1.90449 1.17173 1.89001 1.52460 1.21749 0.95824 0.96649 0.98171 1.21361 1.00231 0.91920 0.98911 1.21157 0.92472 0.98437 0.99442 1.22025 0.94554 0.92629 1.08456 1.96630 1.74293 1.27538 1.96795 1.21334 1.01201 0.90100 0.98755 1.21630 0.92642 0.99054 0.97558 0.90582 0.86658 0.83144 0.82230 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -45.74 11.76 21.89 0.26 -45.48 14 2 C 0.02 1.11 5.49 85.40 0.47 1.57 14 3 Si 1.00 37.94 29.57 68.60 2.03 39.97 14 4 H -0.26 -9.47 7.11 99.48 0.71 -8.76 14 5 H -0.27 -9.85 7.11 99.48 0.71 -9.15 14 6 H -0.24 -8.42 7.11 99.48 0.71 -7.71 14 7 C -0.54 -29.12 8.83 23.67 0.21 -28.91 14 8 H 0.10 4.73 6.07 -2.91 -0.02 4.71 14 9 C 0.36 20.58 6.91 25.67 0.18 20.76 14 10 O -0.60 -39.55 14.93 -4.61 -0.07 -39.62 14 11 C -0.12 -5.71 5.88 -20.01 -0.12 -5.83 14 12 C -0.10 -4.41 9.60 22.55 0.22 -4.19 14 13 C -0.10 -3.16 9.77 22.25 0.22 -2.94 14 14 C -0.10 -2.93 6.24 22.43 0.14 -2.79 14 15 Br -0.04 -0.89 33.69 -20.37 -0.69 -1.58 14 16 C -0.09 -2.88 9.77 22.25 0.22 -2.66 14 17 C -0.09 -3.38 9.44 22.55 0.21 -3.17 14 18 H 0.28 14.71 8.29 -92.71 -0.77 13.94 14 19 H 0.12 5.14 7.65 -2.92 -0.02 5.12 14 20 H 0.15 4.09 8.06 -2.91 -0.02 4.06 14 21 H 0.16 3.74 8.06 -2.91 -0.02 3.72 14 22 H 0.15 5.12 6.22 -2.91 -0.02 5.10 14 Total: -1.00 -68.35 227.54 4.52 -63.83 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.25 Total: 11.03 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 1.74 Total: -28.16 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.26 Total: -45.48 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -0.07 Total: -39.62 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -0.69 Total: -1.58 kcal Total: -68.35 4.52 -63.83 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000251883.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.998 kcal (2) G-P(sol) polarization free energy of solvation -68.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds