Wall clock time and date at job start Sun Mar 29 2020 23:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86804 * 119.99855 * 2 1 4 4 H 1.48503 * 109.46858 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46919 * 299.99878 * 3 2 1 6 6 H 1.48494 * 109.47166 * 60.00090 * 3 2 1 7 7 C 1.38742 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99924 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99723 * 0.02562 * 7 2 1 10 10 C 1.76203 * 99.99708 * 179.97438 * 9 7 2 11 11 N 1.31083 * 125.08868 * 0.02562 * 10 9 7 12 12 C 1.35666 * 109.64156 * 179.97438 * 11 10 9 13 13 C 1.39832 * 133.37134 * 179.97438 * 12 11 10 14 14 C 1.37733 * 119.76348 * 180.02562 * 13 12 11 15 15 Cl 1.73603 * 119.75284 * 179.97438 * 14 13 12 16 16 C 1.38852 * 120.49147 * 359.97438 * 14 13 12 17 17 C 1.37945 * 120.43967 * 0.02562 * 16 14 13 18 18 C 1.38678 * 119.87225 * 359.97438 * 17 16 14 19 19 N 1.36707 * 125.08544 * 179.97438 * 10 9 7 20 20 H 0.97003 * 126.40169 * 0.02562 * 19 10 9 21 21 H 0.97000 * 119.99819 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.12194 * 359.97438 * 13 12 11 23 23 H 1.08002 * 119.78116 * 179.97438 * 16 14 13 24 24 H 1.08005 * 120.06288 * 179.69880 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0095 -1.2015 0.0005 8 1 3.0896 -1.2015 0.0010 9 16 1.1285 -2.7275 0.0005 10 6 2.4783 -3.8600 0.0005 11 7 3.7450 -3.5227 0.0010 12 6 4.5145 -4.6400 0.0014 13 6 5.8963 -4.8543 0.0015 14 6 6.3887 -6.1406 0.0015 15 17 8.1043 -6.4063 0.0009 16 6 5.5232 -7.2263 0.0018 17 6 4.1576 -7.0315 0.0017 18 6 3.6437 -5.7434 0.0018 19 7 2.3613 -5.2221 0.0010 20 1 1.5341 -5.7288 0.0011 21 1 -0.4850 0.8401 -0.0004 22 1 6.5751 -4.0142 0.0009 23 1 5.9218 -8.2301 0.0013 24 1 3.4899 -7.8804 -0.0030 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017989072.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:34 Heat of formation + Delta-G solvation = 49.045383 kcal Electronic energy + Delta-G solvation = -13303.914778 eV Core-core repulsion = 10755.412326 eV Total energy + Delta-G solvation = -2548.502452 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 253.998 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.39279 -37.33625 -35.77517 -32.85492 -32.59560 -29.57819 -28.89766 -25.78068 -23.13991 -22.03744 -21.09350 -18.45435 -17.57799 -16.66489 -15.99646 -15.00914 -14.83806 -14.41505 -14.19762 -13.76963 -13.05199 -12.77536 -12.36554 -11.62814 -11.31108 -11.23411 -11.11164 -10.87411 -10.84519 -10.31811 -10.24167 -9.45055 -9.38558 -9.04154 -8.40036 -7.93637 -6.83257 -6.56455 -4.30698 1.16144 1.59591 2.29890 2.38895 3.09435 3.19307 3.20623 3.29353 3.58275 3.95585 4.09182 4.72106 4.89017 4.99664 5.15222 5.42769 5.53268 5.55198 5.80811 6.13641 6.42832 6.54105 6.72687 7.02853 7.49754 7.62447 8.30035 8.41312 8.96704 10.51927 Molecular weight = 254.00amu Principal moments of inertia in cm(-1) A = 0.033218 B = 0.005341 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.720640 B = 5241.476574 C = 6074.355978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.075 3.925 3 Si 0.934 3.066 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.533 4.533 8 H 0.110 0.890 9 S 0.143 5.857 10 C 0.272 3.728 11 N -0.504 5.504 12 C 0.084 3.916 13 C -0.073 4.073 14 C -0.040 4.040 15 Cl -0.083 7.083 16 C -0.121 4.121 17 C -0.094 4.094 18 C 0.038 3.962 19 N -0.601 5.601 20 H 0.421 0.579 21 H 0.275 0.725 22 H 0.134 0.866 23 H 0.132 0.868 24 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.421 -11.829 -0.003 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.134 4.134 3 Si 0.759 3.241 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.681 4.681 8 H 0.128 0.872 9 S 0.380 5.620 10 C -0.098 4.098 11 N -0.231 5.231 12 C -0.039 4.039 13 C -0.095 4.095 14 C -0.069 4.069 15 Cl -0.054 7.054 16 C -0.143 4.143 17 C -0.116 4.116 18 C -0.074 4.074 19 N -0.216 5.216 20 H 0.260 0.740 21 H 0.085 0.915 22 H 0.152 0.848 23 H 0.150 0.850 24 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.464 -10.959 -0.003 12.246 hybrid contribution 1.138 0.060 0.000 1.140 sum 6.602 -10.899 -0.004 12.743 Atomic orbital electron populations 1.69925 1.06151 1.28573 1.46460 1.25122 0.95202 0.99800 0.93316 0.85849 0.80148 0.80154 0.77981 1.18791 1.20302 1.20309 1.23330 0.97424 0.88715 1.58636 0.87172 1.83610 0.97563 0.96248 1.84607 1.27232 0.99905 0.85142 0.97523 1.71166 0.99228 1.25949 1.26709 1.19101 0.93187 0.89390 1.02259 1.19928 0.92364 0.95406 1.01826 1.20298 0.83883 0.94164 1.08549 1.98331 1.12940 1.96819 1.97305 1.20474 0.91488 0.97748 1.04551 1.19709 0.94531 0.93098 1.04243 1.19004 0.85547 0.95647 1.07251 1.43082 1.06629 1.06403 1.65498 0.74042 0.91527 0.84827 0.85013 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.77 13.22 55.49 0.73 -23.03 14 2 C 0.08 1.98 5.49 -17.47 -0.10 1.89 14 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 14 4 H -0.26 -5.89 7.11 56.52 0.40 -5.48 14 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 14 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 14 7 C -0.53 -14.38 9.35 30.92 0.29 -14.09 14 8 H 0.11 3.08 6.85 -52.48 -0.36 2.72 14 9 S 0.14 3.38 21.89 -107.50 -2.35 1.03 14 10 C 0.27 5.92 8.19 -88.35 -0.72 5.20 14 11 N -0.50 -11.77 9.96 -10.87 -0.11 -11.88 14 12 C 0.08 1.69 7.22 -84.70 -0.61 1.08 14 13 C -0.07 -1.26 9.87 -39.17 -0.39 -1.65 14 14 C -0.04 -0.59 6.31 -39.54 -0.25 -0.84 14 15 Cl -0.08 -1.06 28.94 -51.86 -1.50 -2.56 14 16 C -0.12 -1.59 9.81 -39.46 -0.39 -1.97 14 17 C -0.09 -1.28 10.06 -39.53 -0.40 -1.68 14 18 C 0.04 0.66 7.30 -83.84 -0.61 0.05 14 19 N -0.60 -10.46 6.28 -10.54 -0.07 -10.53 14 20 H 0.42 5.71 8.96 -40.82 -0.37 5.34 14 21 H 0.27 6.93 8.31 -40.82 -0.34 6.59 14 22 H 0.13 2.22 8.06 -52.49 -0.42 1.79 14 23 H 0.13 1.36 8.06 -52.49 -0.42 0.93 14 24 H 0.13 1.31 8.06 -52.48 -0.42 0.88 14 LS Contribution 253.05 15.07 3.81 3.81 Total: -1.00 -29.12 253.05 -8.81 -37.93 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -1.13 Total: 1.56 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -3.17 Total: -12.01 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.56 Total: -45.44 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -2.35 Total: 1.03 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.12 -8.81 -37.93 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017989072.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.976 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds