Wall clock time and date at job start Sun Mar 29 2020 23:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00054 * 3 2 1 5 5 H 1.48500 * 109.47256 * 29.99968 * 3 2 1 6 6 H 1.48506 * 109.46930 * 149.99809 * 3 2 1 7 7 C 1.38948 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00263 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99944 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00037 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46928 * 179.97438 * 12 10 9 14 14 C 1.39745 * 119.99755 * 180.02562 * 13 12 10 15 15 C 1.38897 * 120.06235 * 359.72509 * 14 13 12 16 16 C 1.38106 * 119.93416 * 179.72390 * 15 14 13 17 17 C 1.38377 * 120.06585 * 0.54982 * 16 15 14 18 18 Cl 1.73598 * 119.94188 * 179.70151 * 17 16 15 19 19 C 1.38380 * 120.12061 * 359.72820 * 17 16 15 20 20 C 1.38114 * 120.06313 * 359.97438 * 19 17 16 21 21 H 0.97002 * 120.00016 * 0.02562 * 1 2 3 22 22 H 0.96996 * 120.00211 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.47103 * 59.99751 * 12 10 9 24 24 H 1.09000 * 109.47247 * 299.99628 * 12 10 9 25 25 H 0.96999 * 120.00080 * 0.02562 * 13 12 10 26 26 H 1.07998 * 120.02939 * 359.97438 * 15 14 13 27 27 H 1.08005 * 119.96724 * 180.25874 * 16 15 14 28 28 H 1.07999 * 119.96832 * 179.97438 * 19 17 16 29 29 H 1.07994 * 120.03195 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1959 -5.9764 0.0027 14 6 1.7301 -7.2939 0.0027 15 6 0.3648 -7.5492 0.0081 16 6 -0.0927 -8.8523 0.0023 17 6 0.8076 -9.9031 0.0028 18 17 0.2290 -11.5399 0.0034 19 6 2.1684 -9.6517 0.0033 20 6 2.6316 -8.3506 0.0028 21 1 -0.4850 0.8401 -0.0004 22 1 0.3535 -2.3906 0.0005 23 1 0.6175 -4.9212 -0.8880 24 1 0.6169 -4.9201 0.8920 25 1 3.1495 -5.7992 0.0030 26 1 -0.3383 -6.7295 0.0126 27 1 -1.1543 -9.0514 0.0022 28 1 2.8688 -10.4737 0.0040 29 1 3.6936 -8.1549 0.0036 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020051217.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:54 Heat of formation + Delta-G solvation = -23.559469 kcal Electronic energy + Delta-G solvation = -15344.132966 eV Core-core repulsion = 12485.562354 eV Total energy + Delta-G solvation = -2858.570611 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.52396 -38.34281 -36.49547 -34.91433 -33.98104 -31.47035 -31.03645 -29.52069 -26.68255 -24.50593 -22.80884 -21.49334 -19.49947 -18.15341 -17.67498 -16.55194 -15.66660 -15.48588 -14.89570 -14.64514 -14.21747 -13.98233 -13.55971 -13.50129 -13.42925 -12.53002 -12.29851 -12.02462 -11.65598 -11.50750 -11.37788 -11.15970 -10.70402 -10.50103 -10.36420 -9.76599 -9.67360 -9.02734 -8.69910 -8.16410 -7.27074 -6.57357 -3.99411 1.36072 1.46081 2.30003 3.07797 3.18743 3.23611 3.53198 3.66216 3.79555 4.07956 4.76919 4.83882 4.92736 5.10537 5.32945 5.44986 5.54085 5.66253 5.80106 5.93787 6.02183 6.15233 6.29951 6.37511 6.70186 7.37085 7.40790 7.85636 7.95963 8.39037 8.99183 9.32539 9.80600 10.59460 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.071441 B = 0.003360 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.836397 B = 8330.754119 C = 8707.444883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.595 6.595 12 C 0.110 3.890 13 N -0.719 5.719 14 C 0.234 3.766 15 C -0.195 4.195 16 C -0.058 4.058 17 C -0.105 4.105 18 Cl -0.092 7.092 19 C -0.059 4.059 20 C -0.190 4.190 21 H 0.274 0.726 22 H 0.395 0.605 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.413 0.587 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 -15.448 0.016 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.481 6.481 12 C -0.018 4.018 13 N -0.349 5.349 14 C 0.127 3.873 15 C -0.218 4.218 16 C -0.077 4.077 17 C -0.134 4.134 18 Cl -0.064 7.064 19 C -0.078 4.078 20 C -0.214 4.214 21 H 0.084 0.916 22 H 0.229 0.771 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.252 0.748 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.205 -15.196 0.022 15.244 hybrid contribution 0.001 0.828 -0.013 0.828 sum -1.205 -14.368 0.010 14.419 Atomic orbital electron populations 1.69607 1.06013 1.28584 1.49313 1.25326 0.95684 0.99963 0.96702 0.85804 0.79246 0.80410 0.78534 1.20227 1.20749 1.19303 1.19731 0.93482 0.81997 1.48301 0.87696 1.41798 1.09407 1.04506 1.62711 1.19706 0.88337 0.84925 0.85715 1.90510 1.13770 1.86741 1.57119 1.20996 0.92182 0.86521 1.02120 1.44618 1.09927 1.01045 1.79262 1.17977 0.92880 0.84815 0.91667 1.20643 0.93791 0.96735 1.10618 1.20735 0.99160 0.90904 0.96904 1.20513 0.93814 0.84745 1.14325 1.98324 1.89270 1.21208 1.97573 1.20690 0.93368 0.96558 0.97228 1.20527 0.99292 0.90936 1.10602 0.91558 0.77111 0.90444 0.90440 0.74828 0.85110 0.85373 0.85414 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.33 13.05 55.50 0.72 -22.61 15 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 15 3 Si 0.93 20.23 29.55 -169.99 -5.02 15.21 15 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 7 C -0.31 -8.17 9.68 -14.93 -0.14 -8.31 15 8 H 0.11 2.94 7.16 -52.48 -0.38 2.57 15 9 N -0.55 -13.19 5.29 -10.96 -0.06 -13.25 15 10 C 0.43 9.49 7.85 -10.99 -0.09 9.40 15 11 O -0.60 -15.17 15.24 5.54 0.08 -15.08 15 12 C 0.11 1.82 5.39 -5.19 -0.03 1.79 15 13 N -0.72 -11.30 5.71 -59.79 -0.34 -11.64 15 14 C 0.23 3.26 6.65 -83.76 -0.56 2.70 15 15 C -0.19 -2.48 9.31 -39.39 -0.37 -2.85 15 16 C -0.06 -0.68 9.82 -39.58 -0.39 -1.07 15 17 C -0.11 -1.26 6.32 -39.48 -0.25 -1.51 15 18 Cl -0.09 -1.02 28.95 -51.86 -1.50 -2.52 15 19 C -0.06 -0.68 9.82 -39.57 -0.39 -1.07 15 20 C -0.19 -2.38 9.90 -39.38 -0.39 -2.77 15 21 H 0.27 6.77 8.31 -40.82 -0.34 6.43 15 22 H 0.40 8.98 7.90 -40.82 -0.32 8.65 15 23 H 0.08 1.15 7.96 -51.93 -0.41 0.74 15 24 H 0.08 1.15 7.94 -51.93 -0.41 0.74 15 25 H 0.41 6.91 7.45 -40.82 -0.30 6.61 15 26 H 0.13 1.53 6.73 -52.49 -0.35 1.17 15 27 H 0.13 1.27 8.06 -52.48 -0.42 0.85 15 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 15 29 H 0.13 1.44 8.06 -52.49 -0.42 1.01 15 LS Contribution 276.98 15.07 4.17 4.17 Total: -1.00 -28.58 276.98 -7.22 -35.80 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -2.58 Total: 13.04 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.70 Total: -3.12 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.33 Total: -47.50 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.08 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.58 -7.22 -35.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020051217.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.237 kcal (2) G-P(sol) polarization free energy of solvation -28.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds