Wall clock time and date at job start Sun Mar 29 2020 23:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00054 * 3 2 1 5 5 H 1.48500 * 109.47256 * 29.99968 * 3 2 1 6 6 H 1.48506 * 109.46930 * 149.99809 * 3 2 1 7 7 C 1.38948 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00263 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99944 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00037 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46928 * 179.97438 * 12 10 9 14 14 C 1.39745 * 119.99755 * 180.02562 * 13 12 10 15 15 C 1.38897 * 120.06235 * 359.72509 * 14 13 12 16 16 C 1.38106 * 119.93416 * 179.72390 * 15 14 13 17 17 C 1.38377 * 120.06585 * 0.54982 * 16 15 14 18 18 Cl 1.73598 * 119.94188 * 179.70151 * 17 16 15 19 19 C 1.38380 * 120.12061 * 359.72820 * 17 16 15 20 20 C 1.38114 * 120.06313 * 359.97438 * 19 17 16 21 21 H 0.97002 * 120.00016 * 0.02562 * 1 2 3 22 22 H 0.96996 * 120.00211 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.47103 * 59.99751 * 12 10 9 24 24 H 1.09000 * 109.47247 * 299.99628 * 12 10 9 25 25 H 0.96999 * 120.00080 * 0.02562 * 13 12 10 26 26 H 1.07998 * 120.02939 * 359.97438 * 15 14 13 27 27 H 1.08005 * 119.96724 * 180.25874 * 16 15 14 28 28 H 1.07999 * 119.96832 * 179.97438 * 19 17 16 29 29 H 1.07994 * 120.03195 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1959 -5.9764 0.0027 14 6 1.7301 -7.2939 0.0027 15 6 0.3648 -7.5492 0.0081 16 6 -0.0927 -8.8523 0.0023 17 6 0.8076 -9.9031 0.0028 18 17 0.2290 -11.5399 0.0034 19 6 2.1684 -9.6517 0.0033 20 6 2.6316 -8.3506 0.0028 21 1 -0.4850 0.8401 -0.0004 22 1 0.3535 -2.3906 0.0005 23 1 0.6175 -4.9212 -0.8880 24 1 0.6169 -4.9201 0.8920 25 1 3.1495 -5.7992 0.0030 26 1 -0.3383 -6.7295 0.0126 27 1 -1.1543 -9.0514 0.0022 28 1 2.8688 -10.4737 0.0040 29 1 3.6936 -8.1549 0.0036 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020051217.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:54 Heat of formation + Delta-G solvation = -41.799493 kcal Electronic energy + Delta-G solvation = -15344.923912 eV Core-core repulsion = 12485.562354 eV Total energy + Delta-G solvation = -2859.361558 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.71400 -39.91260 -37.46345 -36.32254 -35.63888 -33.38522 -31.99491 -30.70713 -28.10649 -26.19774 -23.81565 -22.56294 -21.17263 -20.02922 -18.87840 -17.70437 -17.16924 -16.74212 -16.36656 -16.32260 -15.74553 -15.10630 -14.92888 -14.67967 -14.36599 -13.88849 -13.87158 -13.55264 -12.95854 -12.94938 -12.51824 -12.47016 -12.30241 -12.13589 -11.60416 -11.58164 -10.78570 -10.55062 -10.10062 -9.95634 -8.52236 -8.34350 -6.01969 0.42679 0.48246 1.35720 1.37890 1.42300 1.54257 1.91803 2.19338 2.41253 2.82590 3.15279 3.16406 3.90713 4.03321 4.18050 4.38584 4.43577 4.48376 4.50778 4.67470 5.05238 5.17373 5.32269 5.37108 5.43301 5.73319 5.89985 6.28421 6.49953 6.72388 7.03977 7.44571 7.96591 8.64401 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.071441 B = 0.003360 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.836397 B = 8330.754119 C = 8707.444883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.009 4.009 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.339 4.339 8 H 0.082 0.918 9 N -0.560 5.560 10 C 0.429 3.571 11 O -0.631 6.631 12 C 0.126 3.874 13 N -0.730 5.730 14 C 0.215 3.785 15 C -0.199 4.199 16 C -0.060 4.060 17 C -0.109 4.109 18 Cl -0.083 7.083 19 C -0.060 4.060 20 C -0.194 4.194 21 H 0.280 0.720 22 H 0.400 0.600 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.406 0.594 26 H 0.141 0.859 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.395 -16.268 0.003 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.468 4.468 8 H 0.100 0.900 9 N -0.196 5.196 10 C 0.216 3.784 11 O -0.519 6.519 12 C -0.002 4.002 13 N -0.360 5.360 14 C 0.110 3.890 15 C -0.222 4.222 16 C -0.079 4.079 17 C -0.138 4.138 18 Cl -0.055 7.055 19 C -0.080 4.080 20 C -0.217 4.217 21 H 0.089 0.911 22 H 0.235 0.765 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.243 0.757 26 H 0.159 0.841 27 H 0.165 0.835 28 H 0.165 0.835 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.951 -16.058 0.008 16.176 hybrid contribution 0.216 0.920 -0.009 0.945 sum -1.734 -15.138 -0.001 15.237 Atomic orbital electron populations 1.69660 1.06823 1.29606 1.49290 1.26067 0.96556 1.02500 0.95817 0.84906 0.77896 0.76724 0.78692 1.19597 1.19503 1.19746 1.19686 0.92839 0.83785 1.50504 0.90039 1.41836 1.09590 1.04542 1.63596 1.20669 0.88186 0.86285 0.83256 1.90483 1.15755 1.87659 1.58006 1.20868 0.91721 0.83553 1.04056 1.44548 1.09230 1.01485 1.80786 1.18171 0.93725 0.84151 0.92995 1.20822 0.93481 0.97561 1.10295 1.20964 1.00219 0.90458 0.96270 1.20720 0.94134 0.85349 1.13599 1.98330 1.89167 1.20462 1.97497 1.20920 0.93774 0.96739 0.96525 1.20707 0.99744 0.91045 1.10184 0.91051 0.76519 0.88366 0.88358 0.75719 0.84127 0.83500 0.83494 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.29 13.05 21.66 0.28 -47.01 15 2 C -0.01 -0.44 5.50 84.93 0.47 0.03 15 3 Si 0.99 41.30 29.55 68.60 2.03 43.33 15 4 H -0.27 -10.93 7.11 99.48 0.71 -10.23 15 5 H -0.27 -10.64 7.11 99.48 0.71 -9.94 15 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 7 C -0.34 -18.45 9.68 84.04 0.81 -17.63 15 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 15 9 N -0.56 -27.18 5.29 -306.98 -1.62 -28.81 15 10 C 0.43 19.14 7.85 87.66 0.69 19.83 15 11 O -0.63 -32.85 15.24 -3.08 -0.05 -32.89 15 12 C 0.13 4.02 5.39 85.63 0.46 4.48 15 13 N -0.73 -22.40 5.71 -343.08 -1.96 -24.35 15 14 C 0.21 5.68 6.65 38.19 0.25 5.94 15 15 C -0.20 -4.67 9.31 22.40 0.21 -4.46 15 16 C -0.06 -1.27 9.82 22.27 0.22 -1.05 15 17 C -0.11 -2.37 6.32 22.34 0.14 -2.23 15 18 Cl -0.08 -1.64 28.95 -2.72 -0.08 -1.72 15 19 C -0.06 -1.28 9.82 22.27 0.22 -1.06 15 20 C -0.19 -4.58 9.90 22.40 0.22 -4.36 15 21 H 0.28 13.56 8.31 -92.71 -0.77 12.79 15 22 H 0.40 18.25 7.90 -92.71 -0.73 17.51 15 23 H 0.10 2.75 7.96 -2.38 -0.02 2.73 15 24 H 0.10 2.75 7.94 -2.39 -0.02 2.73 15 25 H 0.41 13.62 7.45 -92.71 -0.69 12.93 15 26 H 0.14 2.95 6.73 -2.91 -0.02 2.93 15 27 H 0.15 2.51 8.06 -2.91 -0.02 2.48 15 28 H 0.15 2.47 8.06 -2.91 -0.02 2.45 15 29 H 0.14 2.92 8.06 -2.91 -0.02 2.89 15 Total: -1.00 -60.75 276.98 2.08 -58.68 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: -0.22 Total: 33.29 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 3.69 Total: -0.51 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -3.30 Total: -100.17 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -0.05 Total: -32.89 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.72 kcal Total: -60.75 2.08 -58.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020051217.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.879 kcal (2) G-P(sol) polarization free energy of solvation -60.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds