Wall clock time and date at job start Sun Mar 29 2020 23:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38289 * 119.93277 * 2 1 4 4 C 1.38099 * 120.07899 * 180.23461 * 3 2 1 5 5 C 1.38911 * 119.95433 * 359.46238 * 4 3 2 6 6 N 1.39904 * 120.06072 * 180.25475 * 5 4 3 7 7 C 1.34774 * 119.99633 * 144.90757 * 6 5 4 8 8 O 1.21590 * 120.00234 * 4.62675 * 7 6 5 9 9 N 1.34784 * 119.99905 * 184.61761 * 7 6 5 10 10 C 1.37167 * 119.99993 * 180.02562 * 9 7 6 11 11 H 1.08009 * 119.99688 * 0.02562 * 10 9 7 12 12 C 1.38875 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.31471 * 119.99899 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00099 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47005 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47219 * 119.99749 * 14 12 10 17 17 H 1.48504 * 109.47051 * 239.99785 * 14 12 10 18 18 C 1.38833 * 119.87083 * 0.27754 * 5 4 3 19 19 C 1.38248 * 119.92015 * 0.02562 * 18 5 4 20 20 Cl 1.73599 * 119.97747 * 179.97438 * 19 18 5 21 21 H 1.09004 * 109.47416 * 270.27977 * 1 2 3 22 22 H 1.08998 * 109.47449 * 30.28005 * 1 2 3 23 23 H 1.08998 * 109.47125 * 150.28181 * 1 2 3 24 24 H 1.07989 * 119.95890 * 359.97331 * 3 2 1 25 25 H 1.08003 * 120.01960 * 179.74055 * 4 3 2 26 26 H 0.96996 * 120.00414 * 324.91007 * 6 5 4 27 27 H 0.96998 * 119.99789 * 0.02562 * 9 7 6 28 28 H 0.97001 * 119.99989 * 179.97438 * 13 12 10 29 29 H 1.08003 * 120.03805 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2020 -0.0049 5 6 4.2747 0.0002 0.0015 6 7 5.6737 0.0012 0.0019 7 6 6.3480 -0.9499 0.6780 8 8 5.7435 -1.8566 1.2174 9 7 7.6925 -0.8961 0.7562 10 6 8.3788 -1.8644 1.4439 11 1 7.8418 -2.6702 1.9224 12 6 9.7641 -1.8087 1.5249 13 7 10.4177 -0.8282 0.9420 14 14 10.6988 -3.1278 2.4608 15 1 9.7383 -4.1126 3.0200 16 1 11.6363 -3.8184 1.5392 17 1 11.4648 -2.5006 3.5677 18 6 3.5800 -1.2018 0.0069 19 6 2.1975 -1.1992 0.0054 20 17 1.3273 -2.7013 0.0116 21 1 -0.3634 0.0050 1.0277 22 1 -0.3634 0.8874 -0.5182 23 1 -0.3633 -0.8925 -0.5094 24 1 1.6553 2.1326 -0.0004 25 1 4.1159 2.1385 -0.0091 26 1 6.1584 0.6864 -0.4843 27 1 8.1747 -0.1727 0.3262 28 1 11.3853 -0.7890 0.9989 29 1 4.1189 -2.1377 0.0114 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037489281.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:21 Heat of formation + Delta-G solvation = -35.116308 kcal Electronic energy + Delta-G solvation = -15825.976975 eV Core-core repulsion = 12966.905221 eV Total energy + Delta-G solvation = -2859.071753 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.45308 -39.80761 -37.49243 -36.34916 -35.60130 -33.48427 -32.14828 -31.66950 -27.75895 -26.32494 -24.00889 -22.73785 -21.64436 -20.08036 -19.35697 -18.18144 -16.84369 -16.59359 -16.37818 -15.82694 -15.75573 -15.16573 -15.06614 -14.86064 -14.44060 -13.51590 -13.46186 -13.18296 -12.98876 -12.78806 -12.61613 -12.42588 -12.24936 -12.11070 -11.79540 -11.62763 -11.07167 -10.79978 -10.08901 -9.72364 -8.93661 -8.46299 -5.94902 0.19536 0.35662 1.17035 1.39330 1.41980 1.55618 2.00106 2.21549 2.43840 2.74151 3.24955 3.82193 3.94287 4.01440 4.20936 4.38272 4.52177 4.80324 4.87171 4.88668 5.13372 5.25476 5.34209 5.40694 5.51291 5.60594 5.73547 6.04427 6.36230 6.73877 7.09909 7.60105 8.07716 8.72627 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.037974 B = 0.004784 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.172716 B = 5851.824802 C = 6477.693122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C -0.079 4.079 4 C -0.140 4.140 5 C 0.165 3.835 6 N -0.681 5.681 7 C 0.648 3.352 8 O -0.646 6.646 9 N -0.582 5.582 10 C -0.319 4.319 11 H 0.081 0.919 12 C -0.015 4.015 13 N -0.925 5.925 14 Si 0.995 3.005 15 H -0.274 1.274 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.141 4.141 19 C -0.032 4.032 20 Cl -0.074 7.074 21 H 0.079 0.921 22 H 0.095 0.905 23 H 0.065 0.935 24 H 0.176 0.824 25 H 0.159 0.841 26 H 0.418 0.582 27 H 0.397 0.603 28 H 0.276 0.724 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.608 6.998 -4.284 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.108 4.108 3 C -0.098 4.098 4 C -0.161 4.161 5 C 0.068 3.932 6 N -0.329 5.329 7 C 0.349 3.651 8 O -0.530 6.530 9 N -0.223 5.223 10 C -0.448 4.448 11 H 0.099 0.901 12 C -0.214 4.214 13 N -0.566 5.566 14 Si 0.819 3.181 15 H -0.199 1.199 16 H -0.197 1.197 17 H -0.196 1.196 18 C -0.163 4.163 19 C -0.059 4.059 20 Cl -0.045 7.045 21 H 0.097 0.903 22 H 0.114 0.886 23 H 0.084 0.916 24 H 0.193 0.807 25 H 0.177 0.823 26 H 0.255 0.745 27 H 0.232 0.768 28 H 0.086 0.914 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.872 6.090 -3.796 17.419 hybrid contribution 1.380 -0.472 0.010 1.458 sum -14.493 5.617 -3.786 15.998 Atomic orbital electron populations 1.20854 0.88229 1.04207 1.03395 1.20088 0.98222 0.90670 1.01841 1.21171 0.92643 0.98100 0.97837 1.21315 0.95175 0.96312 1.03264 1.17658 0.82025 0.93941 0.99527 1.42343 1.04326 1.32124 1.54143 1.16099 0.82673 0.83665 0.82697 1.90729 1.68282 1.38387 1.55641 1.40945 1.02599 1.27384 1.51356 1.19583 0.89709 1.05239 1.30312 0.90138 1.25980 0.96685 1.00171 0.98590 1.69700 1.09351 1.32722 1.44866 0.84832 0.77767 0.77581 0.77916 1.19850 1.19672 1.19625 1.21100 0.92862 0.99011 1.03312 1.20747 0.91252 0.87498 1.06374 1.98322 1.76154 1.33116 1.96958 0.90287 0.88621 0.91563 0.80716 0.82348 0.74494 0.76835 0.91413 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.61 71.24 0.68 -1.16 15 2 C -0.11 -2.53 5.89 -19.82 -0.12 -2.65 15 3 C -0.08 -1.60 9.69 22.25 0.22 -1.38 15 4 C -0.14 -3.41 9.97 22.40 0.22 -3.19 15 5 C 0.17 5.66 6.30 38.16 0.24 5.90 15 6 N -0.68 -25.20 5.34 -317.20 -1.69 -26.89 15 7 C 0.65 31.76 8.36 179.05 1.50 33.26 15 8 O -0.65 -36.64 13.35 -4.00 -0.05 -36.69 15 9 N -0.58 -30.01 5.29 -320.71 -1.70 -31.71 15 10 C -0.32 -18.15 9.68 84.01 0.81 -17.34 15 11 H 0.08 4.90 7.16 -2.91 -0.02 4.88 15 12 C -0.02 -0.81 5.50 84.90 0.47 -0.34 15 13 N -0.93 -49.86 13.05 21.65 0.28 -49.58 15 14 Si 1.00 43.24 29.55 68.60 2.03 45.27 15 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 18 C -0.14 -5.37 8.48 22.41 0.19 -5.18 15 19 C -0.03 -0.99 6.31 22.31 0.14 -0.85 15 20 Cl -0.07 -2.19 27.28 -2.72 -0.07 -2.26 15 21 H 0.08 1.22 8.14 -2.39 -0.02 1.20 15 22 H 0.10 1.06 8.09 -2.39 -0.02 1.04 15 23 H 0.07 1.17 6.89 -2.39 -0.02 1.16 15 24 H 0.18 2.00 8.06 -2.92 -0.02 1.98 15 25 H 0.16 2.86 8.06 -2.91 -0.02 2.83 15 26 H 0.42 12.29 8.84 -92.71 -0.82 11.47 15 27 H 0.40 19.21 7.92 -92.71 -0.73 18.48 15 28 H 0.28 13.94 8.31 -92.71 -0.77 13.17 15 29 H 0.11 5.22 6.22 -2.91 -0.02 5.21 15 Total: -1.00 -68.68 272.66 2.80 -65.88 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: -0.34 Total: 28.92 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 4.35 Total: 7.07 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -3.11 Total: -108.18 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.05 Total: -36.69 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.07 Total: -2.26 kcal Total: -68.68 2.80 -65.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037489281.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.763 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds