Wall clock time and date at job start Sun Mar 29 2020 23:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86797 * 119.99925 * 2 1 4 4 H 1.48493 * 109.47399 * 240.00072 * 3 2 1 5 5 H 1.48504 * 109.47552 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47007 * 120.00082 * 3 2 1 7 7 C 1.39002 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00093 * 178.45207 * 7 2 1 9 9 N 1.36873 * 120.00122 * 358.44638 * 7 2 1 10 10 C 1.34784 * 120.00049 * 147.79725 * 9 7 2 11 11 O 1.21735 * 119.99715 * 4.26730 * 10 9 7 12 12 C 1.46538 * 120.00111 * 184.26749 * 10 9 7 13 13 C 1.38011 * 126.23121 * 185.68249 * 12 10 9 14 14 C 1.39861 * 107.09547 * 179.97438 * 13 12 10 15 15 Cl 1.73606 * 126.06363 * 179.73424 * 14 13 12 16 16 C 1.35549 * 107.86455 * 0.02562 * 14 13 12 17 17 N 1.35685 * 108.86223 * 359.97438 * 16 14 13 18 18 H 0.96998 * 125.67497 * 179.97438 * 17 16 14 19 19 C 1.46494 * 120.00264 * 327.79717 * 9 7 2 20 20 C 1.52999 * 117.50043 * 313.09188 * 19 9 7 21 21 C 1.52999 * 117.50492 * 244.42635 * 19 9 7 22 22 H 0.97003 * 119.99524 * 5.01294 * 1 2 3 23 23 H 1.08005 * 126.45438 * 359.97438 * 13 12 10 24 24 H 1.08001 * 125.56511 * 179.97438 * 16 14 13 25 25 H 1.09008 * 115.54868 * 98.75494 * 19 9 7 26 26 H 1.08997 * 117.50036 * 359.97438 * 20 19 9 27 27 H 1.09002 * 117.50356 * 145.01766 * 20 19 9 28 28 H 1.09000 * 117.50429 * 214.98221 * 21 19 9 29 29 H 1.09002 * 117.49536 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1017 1.6965 -1.2124 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0090 -1.2038 -0.0005 8 1 3.0887 -1.2040 -0.0258 9 7 1.3250 -2.3890 0.0311 10 6 1.8288 -3.4746 -0.5888 11 8 2.9276 -3.4226 -1.1101 12 6 1.0538 -4.7174 -0.6352 13 6 1.4853 -5.9296 -1.1345 14 6 0.4314 -6.8361 -0.9808 15 17 0.4432 -8.5067 -1.4529 16 6 -0.6031 -6.1771 -0.4037 17 7 -0.2370 -4.8885 -0.1884 18 1 -0.7925 -4.2020 0.2128 19 6 0.0453 -2.4775 0.7386 20 6 -0.0275 -1.8787 2.1447 21 6 -0.0253 -3.3982 1.9586 22 1 -0.4849 0.8369 -0.0734 23 1 2.4542 -6.1388 -1.5632 24 1 -1.5621 -6.6076 -0.1557 25 1 -0.8441 -2.4021 0.1129 26 1 0.8769 -1.4193 2.5435 27 1 -0.9647 -1.4098 2.4442 28 1 -0.9612 -3.9282 2.1357 29 1 0.8803 -3.9383 2.2345 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426124.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:32 Heat of formation + Delta-G solvation = 50.721500 kcal Electronic energy + Delta-G solvation = -16757.523519 eV Core-core repulsion = 13902.173972 eV Total energy + Delta-G solvation = -2855.349547 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.96894 -38.38489 -36.40512 -36.05091 -33.25357 -31.35641 -30.37202 -28.77354 -25.27696 -22.55096 -22.09032 -21.14089 -20.03967 -19.48928 -17.50957 -16.91666 -15.50071 -15.34119 -14.38589 -14.23547 -14.11738 -13.91821 -13.21137 -12.84430 -12.74987 -12.43512 -12.20425 -11.50529 -11.41958 -11.23462 -10.92369 -10.73261 -10.54096 -10.44540 -10.03039 -9.67106 -9.03863 -8.71978 -8.40399 -7.88671 -7.71898 -6.46990 -4.08385 2.09748 2.56518 2.90552 3.15152 3.17733 3.21910 3.72353 3.99472 4.22186 4.40763 4.59801 4.97639 5.29333 5.45021 5.48351 5.61477 5.74721 5.83936 5.98979 6.17687 6.38220 6.52271 6.64774 6.85008 6.95231 7.17666 7.42870 7.74142 8.03302 8.33743 9.00531 9.19143 9.77359 10.59477 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.040152 B = 0.006183 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.174250 B = 4527.421836 C = 4982.545822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.043 3.957 3 Si 0.926 3.074 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.310 4.310 8 H 0.098 0.902 9 N -0.414 5.414 10 C 0.523 3.477 11 O -0.566 6.566 12 C 0.010 3.990 13 C -0.134 4.134 14 C -0.122 4.122 15 Cl -0.069 7.069 16 C 0.003 3.997 17 N -0.526 5.526 18 H 0.428 0.572 19 C 0.107 3.893 20 C -0.122 4.122 21 C -0.236 4.236 22 H 0.270 0.730 23 H 0.148 0.852 24 H 0.169 0.831 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.473 -7.651 2.923 9.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.162 4.162 3 Si 0.753 3.247 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.437 4.437 8 H 0.116 0.884 9 N -0.132 5.132 10 C 0.312 3.688 11 O -0.449 6.449 12 C -0.106 4.106 13 C -0.161 4.161 14 C -0.156 4.156 15 Cl -0.041 7.041 16 C -0.134 4.134 17 N -0.130 5.130 18 H 0.276 0.724 19 C 0.001 3.999 20 C -0.160 4.160 21 C -0.275 4.275 22 H 0.081 0.919 23 H 0.166 0.834 24 H 0.187 0.813 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.165 -7.390 2.774 9.433 hybrid contribution -0.153 0.960 0.136 0.982 sum -5.319 -6.430 2.910 8.837 Atomic orbital electron populations 1.69806 1.05921 1.28103 1.47224 1.25397 0.95593 0.99635 0.95589 0.85990 0.79026 0.80413 0.79300 1.19624 1.20875 1.19773 1.19499 0.92294 0.81401 1.50525 0.88417 1.42923 1.17945 1.09021 1.43359 1.16859 0.87026 0.82298 0.82649 1.90692 1.20619 1.83506 1.50040 1.20965 0.85691 0.96803 1.07095 1.20978 0.99471 0.90032 1.05574 1.19870 0.97378 0.86105 1.12197 1.98278 1.98725 1.15653 1.91400 1.21564 0.99922 0.84941 1.06969 1.43190 1.13082 1.10211 1.46529 0.72417 1.21294 0.89235 1.01585 0.87779 1.22712 1.02862 0.91909 0.98501 1.23797 1.02470 0.95291 1.05959 0.91949 0.83427 0.81342 0.87503 0.88622 0.89201 0.89276 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.46 10.62 55.50 0.59 -20.87 15 2 C 0.04 1.07 5.04 -17.45 -0.09 0.98 15 3 Si 0.93 19.90 29.56 -169.99 -5.02 14.87 15 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 7 C -0.31 -8.20 8.67 -15.02 -0.13 -8.33 15 8 H 0.10 2.72 7.53 -52.49 -0.40 2.32 15 9 N -0.41 -10.12 2.91 -109.25 -0.32 -10.44 15 10 C 0.52 12.93 7.51 -12.91 -0.10 12.83 15 11 O -0.57 -15.85 16.67 5.16 0.09 -15.77 15 12 C 0.01 0.21 6.51 -81.99 -0.53 -0.32 15 13 C -0.13 -2.55 10.65 -39.06 -0.42 -2.97 15 14 C -0.12 -1.97 6.66 -39.94 -0.27 -2.24 15 15 Cl -0.07 -0.97 29.30 -51.86 -1.52 -2.49 15 16 C 0.00 0.05 11.88 -16.81 -0.20 -0.15 15 17 N -0.53 -8.66 4.67 -9.34 -0.04 -8.71 15 18 H 0.43 6.53 3.96 -40.82 -0.16 6.36 15 19 C 0.11 2.16 2.22 -67.93 -0.15 2.01 15 20 C -0.12 -2.28 8.70 -26.69 -0.23 -2.51 15 21 C -0.24 -3.89 7.69 -26.69 -0.21 -4.10 15 22 H 0.27 6.38 8.32 -40.82 -0.34 6.04 15 23 H 0.15 2.79 8.06 -52.48 -0.42 2.37 15 24 H 0.17 1.79 8.06 -52.49 -0.42 1.37 15 25 H 0.11 2.17 7.35 -51.92 -0.38 1.79 15 26 H 0.10 1.96 7.96 -51.93 -0.41 1.55 15 27 H 0.09 1.53 8.14 -51.93 -0.42 1.11 15 28 H 0.09 1.17 7.74 -51.93 -0.40 0.77 15 29 H 0.09 1.65 8.14 -51.93 -0.42 1.22 15 LS Contribution 265.84 15.07 4.01 4.01 Total: -1.00 -28.64 265.84 -7.12 -35.76 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -2.58 Total: 8.42 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -2.32 Total: -4.79 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.23 Total: -40.01 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.09 Total: -15.77 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.52 Total: -2.49 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.64 -7.12 -35.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426124.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.482 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds