Wall clock time and date at job start Sun Mar 29 2020 23:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86797 * 119.99925 * 2 1 4 4 H 1.48493 * 109.47399 * 240.00072 * 3 2 1 5 5 H 1.48504 * 109.47552 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47007 * 120.00082 * 3 2 1 7 7 C 1.39002 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00093 * 178.45207 * 7 2 1 9 9 N 1.36873 * 120.00122 * 358.44638 * 7 2 1 10 10 C 1.34784 * 120.00049 * 147.79725 * 9 7 2 11 11 O 1.21735 * 119.99715 * 4.26730 * 10 9 7 12 12 C 1.46538 * 120.00111 * 184.26749 * 10 9 7 13 13 C 1.38011 * 126.23121 * 185.68249 * 12 10 9 14 14 C 1.39861 * 107.09547 * 179.97438 * 13 12 10 15 15 Cl 1.73606 * 126.06363 * 179.73424 * 14 13 12 16 16 C 1.35549 * 107.86455 * 0.02562 * 14 13 12 17 17 N 1.35685 * 108.86223 * 359.97438 * 16 14 13 18 18 H 0.96998 * 125.67497 * 179.97438 * 17 16 14 19 19 C 1.46494 * 120.00264 * 327.79717 * 9 7 2 20 20 C 1.52999 * 117.50043 * 313.09188 * 19 9 7 21 21 C 1.52999 * 117.50492 * 244.42635 * 19 9 7 22 22 H 0.97003 * 119.99524 * 5.01294 * 1 2 3 23 23 H 1.08005 * 126.45438 * 359.97438 * 13 12 10 24 24 H 1.08001 * 125.56511 * 179.97438 * 16 14 13 25 25 H 1.09008 * 115.54868 * 98.75494 * 19 9 7 26 26 H 1.08997 * 117.50036 * 359.97438 * 20 19 9 27 27 H 1.09002 * 117.50356 * 145.01766 * 20 19 9 28 28 H 1.09000 * 117.50429 * 214.98221 * 21 19 9 29 29 H 1.09002 * 117.49536 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1017 1.6965 -1.2124 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0090 -1.2038 -0.0005 8 1 3.0887 -1.2040 -0.0258 9 7 1.3250 -2.3890 0.0311 10 6 1.8288 -3.4746 -0.5888 11 8 2.9276 -3.4226 -1.1101 12 6 1.0538 -4.7174 -0.6352 13 6 1.4853 -5.9296 -1.1345 14 6 0.4314 -6.8361 -0.9808 15 17 0.4432 -8.5067 -1.4529 16 6 -0.6031 -6.1771 -0.4037 17 7 -0.2370 -4.8885 -0.1884 18 1 -0.7925 -4.2020 0.2128 19 6 0.0453 -2.4775 0.7386 20 6 -0.0275 -1.8787 2.1447 21 6 -0.0253 -3.3982 1.9586 22 1 -0.4849 0.8369 -0.0734 23 1 2.4542 -6.1388 -1.5632 24 1 -1.5621 -6.6076 -0.1557 25 1 -0.8441 -2.4021 0.1129 26 1 0.8769 -1.4193 2.5435 27 1 -0.9647 -1.4098 2.4442 28 1 -0.9612 -3.9282 2.1357 29 1 0.8803 -3.9383 2.2345 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426124.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:31 Heat of formation + Delta-G solvation = 33.572197 kcal Electronic energy + Delta-G solvation = -16758.267169 eV Core-core repulsion = 13902.173972 eV Total energy + Delta-G solvation = -2856.093196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.39827 -40.05991 -38.14662 -37.23231 -35.06541 -33.19788 -31.76722 -30.25821 -27.10963 -24.16663 -23.51519 -22.76530 -21.38079 -20.95173 -19.25891 -18.57206 -17.16712 -17.06351 -16.03315 -15.90065 -15.65313 -15.29067 -14.78041 -14.44527 -14.19710 -13.93071 -13.75338 -13.22052 -13.02632 -12.70084 -12.61622 -12.35177 -12.15800 -11.70679 -11.67211 -11.26139 -10.85459 -10.55342 -9.84464 -9.65940 -9.11173 -8.37361 -6.06596 0.59697 1.33935 1.39826 1.41529 1.48445 1.60205 2.19758 2.39450 2.48397 2.80078 2.94653 3.13511 3.90349 4.00100 4.15597 4.25584 4.30839 4.37542 4.65224 4.76704 5.00027 5.03429 5.20624 5.32393 5.41587 5.54955 5.74197 6.09234 6.44654 6.52893 7.08892 7.31891 7.90419 8.66319 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.040152 B = 0.006183 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.174250 B = 4527.421836 C = 4982.545822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.019 3.981 3 Si 0.980 3.020 4 H -0.282 1.282 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.348 4.348 8 H 0.066 0.934 9 N -0.423 5.423 10 C 0.508 3.492 11 O -0.622 6.622 12 C -0.027 4.027 13 C -0.136 4.136 14 C -0.139 4.139 15 Cl -0.048 7.048 16 C 0.046 3.954 17 N -0.516 5.516 18 H 0.435 0.565 19 C 0.081 3.919 20 C -0.126 4.126 21 C -0.195 4.195 22 H 0.275 0.725 23 H 0.135 0.865 24 H 0.223 0.777 25 H 0.109 0.891 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.138 0.862 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 -8.718 3.905 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.208 1.208 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.476 4.476 8 H 0.084 0.916 9 N -0.140 5.140 10 C 0.299 3.701 11 O -0.509 6.509 12 C -0.142 4.142 13 C -0.163 4.163 14 C -0.171 4.171 15 Cl -0.019 7.019 16 C -0.093 4.093 17 N -0.120 5.120 18 H 0.284 0.716 19 C -0.023 4.023 20 C -0.164 4.164 21 C -0.233 4.233 22 H 0.085 0.915 23 H 0.153 0.847 24 H 0.239 0.761 25 H 0.126 0.874 26 H 0.087 0.913 27 H 0.128 0.872 28 H 0.156 0.844 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.036 -8.447 3.787 12.258 hybrid contribution 0.675 1.175 -0.190 1.368 sum -7.360 -7.272 3.597 10.954 Atomic orbital electron populations 1.69853 1.06216 1.28923 1.46088 1.25946 0.96506 1.01477 0.94667 0.85195 0.78173 0.77447 0.78748 1.20767 1.19109 1.19367 1.19381 0.91517 0.83369 1.53337 0.91630 1.43069 1.19003 1.08314 1.43595 1.17514 0.86884 0.83810 0.81895 1.90621 1.23100 1.84857 1.52366 1.20249 0.87602 0.95376 1.10977 1.21067 0.99905 0.90609 1.04699 1.19911 0.96977 0.87131 1.13126 1.98287 1.98673 1.13692 1.91296 1.22378 1.00776 0.83253 1.02853 1.43094 1.11554 1.11284 1.46041 0.71610 1.21392 0.87291 1.05258 0.88390 1.22694 1.02567 0.93901 0.97221 1.23802 1.04113 0.94006 1.01363 0.91455 0.84731 0.76095 0.87387 0.91313 0.87226 0.84396 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.67 10.62 21.67 0.23 -42.44 15 2 C 0.02 0.95 5.04 84.94 0.43 1.38 15 3 Si 0.98 41.32 29.56 68.60 2.03 43.34 15 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 15 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 7 C -0.35 -19.38 8.67 84.09 0.73 -18.65 15 8 H 0.07 3.96 7.53 -2.91 -0.02 3.93 15 9 N -0.42 -21.40 2.91 -617.76 -1.80 -23.20 15 10 C 0.51 26.33 7.51 86.41 0.65 26.98 15 11 O -0.62 -37.41 16.67 -4.46 -0.07 -37.49 15 12 C -0.03 -1.10 6.51 40.34 0.26 -0.84 15 13 C -0.14 -5.13 10.65 22.61 0.24 -4.89 15 14 C -0.14 -4.11 6.66 22.04 0.15 -3.96 15 15 Cl -0.05 -1.21 29.30 -2.72 -0.08 -1.29 15 16 C 0.05 1.11 11.88 83.47 0.99 2.11 15 17 N -0.52 -15.55 4.67 -183.46 -0.86 -16.41 15 18 H 0.43 11.79 3.96 -92.71 -0.37 11.43 15 19 C 0.08 3.24 2.22 44.99 0.10 3.34 15 20 C -0.13 -4.55 8.70 30.62 0.27 -4.28 15 21 C -0.19 -5.91 7.69 30.62 0.24 -5.67 15 22 H 0.28 12.68 8.32 -92.71 -0.77 11.91 15 23 H 0.13 5.31 8.06 -2.91 -0.02 5.28 15 24 H 0.22 3.07 8.06 -2.91 -0.02 3.05 15 25 H 0.11 4.23 7.35 -2.38 -0.02 4.22 15 26 H 0.07 2.85 7.96 -2.39 -0.02 2.83 15 27 H 0.11 3.48 8.14 -2.39 -0.02 3.46 15 28 H 0.14 2.87 7.74 -2.39 -0.02 2.85 15 29 H 0.08 2.70 8.14 -2.39 -0.02 2.68 15 Total: -1.00 -66.40 265.84 4.32 -62.08 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.82 Total: 19.88 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 4.05 Total: -4.49 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -2.42 Total: -82.04 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.07 Total: -37.49 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -66.40 4.32 -62.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426124.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.655 kcal (2) G-P(sol) polarization free energy of solvation -66.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds