Wall clock time and date at job start Mon Mar 30 2020 00:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.46746 * 239.99818 * 2 1 3 13 13 C 1.34774 * 120.00106 * 85.00589 * 12 2 1 14 14 O 1.21511 * 120.00208 * 359.97438 * 13 12 2 15 15 C 1.48157 * 119.99928 * 179.97438 * 13 12 2 16 16 C 1.39865 * 120.91269 * 180.02562 * 15 13 12 17 17 C 1.38088 * 119.03081 * 180.02562 * 16 15 13 18 18 N 1.31847 * 120.91999 * 359.97438 * 17 16 15 19 19 C 1.31882 * 122.02827 * 359.97438 * 18 17 16 20 20 Cl 1.73607 * 119.56749 * 179.97438 * 19 18 17 21 21 C 1.38346 * 120.86119 * 359.72263 * 19 18 17 22 22 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 23 23 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 25 25 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 26 26 H 0.97003 * 120.00040 * 264.99233 * 12 2 1 27 27 H 1.08004 * 120.48570 * 359.97438 * 16 15 13 28 28 H 1.08005 * 119.53719 * 179.97438 * 17 16 15 29 29 H 1.07997 * 120.50930 * 180.31195 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.3426 -2.1615 4.4119 10 1 3.6292 -1.7582 3.7123 11 1 2.4864 -0.1412 5.1123 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8578 1.1605 -2.4119 15 6 2.6414 -0.7167 -3.5667 16 6 2.7829 -0.0375 -4.7811 17 6 3.2465 -0.7267 -5.8843 18 7 3.5544 -2.0062 -5.8036 19 6 3.4370 -2.6842 -4.6785 20 17 3.8600 -4.3676 -4.6447 21 6 2.9859 -2.0703 -3.5237 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7088 1.1615 3.4843 26 1 2.2490 -1.6318 -1.1526 27 1 2.5323 1.0104 -4.8553 28 1 3.3585 -0.2104 -6.8263 29 1 2.8967 -2.6298 -2.6043 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337084.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:57 Heat of formation + Delta-G solvation = -32.440886 kcal Electronic energy + Delta-G solvation = -15883.993795 eV Core-core repulsion = 13025.038056 eV Total energy + Delta-G solvation = -2858.955738 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.71307 -40.15502 -37.72525 -36.83759 -34.67081 -33.75962 -32.18603 -30.77477 -27.37232 -26.09536 -24.66922 -23.04103 -21.47431 -19.89493 -18.14334 -17.94481 -16.97294 -16.91299 -16.69756 -16.20322 -15.84258 -15.34605 -15.24026 -14.68360 -14.44576 -13.74978 -13.07668 -13.03545 -12.93286 -12.78991 -12.74224 -12.40787 -12.31324 -12.16004 -11.35037 -11.17632 -11.11747 -10.73911 -10.61974 -10.13557 -9.89490 -8.19595 -6.37164 -0.51595 -0.22324 0.66093 1.45684 1.46282 1.56600 1.78413 2.18411 2.45339 2.62160 3.11543 3.32283 3.51860 3.73469 3.81998 4.02550 4.43520 4.49824 4.72471 4.89113 4.93494 5.04979 5.28506 5.36926 5.52088 5.63498 5.83478 6.05583 6.50221 6.67734 6.76449 7.21609 7.38340 8.86769 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.026269 B = 0.005309 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.633150 B = 5272.710112 C = 6118.622708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.270 3.730 3 H 0.006 0.994 4 C -0.550 4.550 5 H 0.075 0.925 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.264 1.264 11 H -0.287 1.287 12 N -0.692 5.692 13 C 0.542 3.458 14 O -0.579 6.579 15 C -0.078 4.078 16 C -0.115 4.115 17 C 0.128 3.872 18 N -0.479 5.479 19 C 0.163 3.837 20 Cl -0.019 7.019 21 C -0.122 4.122 22 H 0.015 0.985 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.266 0.734 26 H 0.405 0.595 27 H 0.162 0.838 28 H 0.214 0.786 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.610 -7.905 -13.733 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.167 3.833 3 H 0.024 0.976 4 C -0.588 4.588 5 H 0.093 0.907 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.188 1.188 11 H -0.213 1.213 12 N -0.341 5.341 13 C 0.329 3.671 14 O -0.461 6.461 15 C -0.089 4.089 16 C -0.135 4.135 17 C -0.029 4.029 18 N -0.191 5.191 19 C 0.000 4.000 20 Cl 0.010 6.990 21 C -0.144 4.144 22 H 0.034 0.966 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.242 0.758 27 H 0.179 0.821 28 H 0.230 0.770 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.653 -7.555 -14.305 16.833 hybrid contribution -0.108 -0.187 1.789 1.802 sum 4.545 -7.742 -12.516 15.403 Atomic orbital electron populations 1.21923 0.97918 0.99720 0.99908 1.18465 0.91378 0.92171 0.81322 0.97622 1.21521 1.32866 1.13722 0.90654 0.90703 1.25767 0.94806 0.95520 1.02248 1.70041 1.36832 1.23768 1.24729 0.85346 0.79007 0.78046 0.77971 1.19645 1.18815 1.21269 1.46270 1.63915 1.14338 1.09536 1.18569 0.78346 0.86400 0.83834 1.90725 1.52701 1.17132 1.85521 1.20419 0.99719 0.93975 0.94812 1.22639 0.96440 1.02981 0.91491 1.23299 0.92325 0.87548 0.99702 1.66984 1.15204 1.10165 1.26788 1.21584 0.99050 0.88983 0.90413 1.98415 1.91461 1.10814 1.98314 1.22129 0.98560 0.93963 0.99734 0.96609 0.93943 0.91183 0.92448 0.75844 0.82085 0.76969 0.82019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.68 9.26 71.98 0.67 -6.02 15 2 C 0.27 13.55 2.56 44.24 0.11 13.66 15 3 H 0.01 0.35 7.58 -2.39 -0.02 0.33 15 4 C -0.55 -28.22 8.73 25.60 0.22 -27.99 15 5 H 0.07 3.57 7.74 -2.91 -0.02 3.54 15 6 C 0.02 0.89 5.30 84.66 0.45 1.34 15 7 N -0.92 -51.26 11.32 21.45 0.24 -51.01 15 8 Si 0.97 40.98 29.54 68.60 2.03 43.00 15 9 H -0.27 -11.04 7.11 99.48 0.71 -10.34 15 10 H -0.26 -10.66 7.11 99.48 0.71 -9.95 15 11 H -0.29 -12.13 7.11 99.48 0.71 -11.42 15 12 N -0.69 -27.81 5.03 -448.70 -2.26 -30.06 15 13 C 0.54 21.07 7.76 86.88 0.67 21.74 15 14 O -0.58 -27.06 16.11 -3.75 -0.06 -27.12 15 15 C -0.08 -2.26 5.91 -19.89 -0.12 -2.38 15 16 C -0.11 -2.71 9.68 22.63 0.22 -2.49 15 17 C 0.13 2.41 11.17 84.65 0.95 3.36 15 18 N -0.48 -11.05 10.31 -186.85 -1.93 -12.97 15 19 C 0.16 3.88 7.27 84.71 0.62 4.49 15 20 Cl -0.02 -0.39 29.10 -2.72 -0.08 -0.47 15 21 C -0.12 -3.04 9.38 22.66 0.21 -2.82 15 22 H 0.01 0.72 8.14 -2.38 -0.02 0.70 15 23 H 0.04 1.91 8.14 -2.39 -0.02 1.89 15 24 H 0.07 3.78 6.07 -2.39 -0.01 3.76 15 25 H 0.27 14.12 8.31 -92.70 -0.77 13.34 15 26 H 0.41 13.57 6.68 -92.71 -0.62 12.95 15 27 H 0.16 3.61 7.74 -2.91 -0.02 3.59 15 28 H 0.21 2.12 8.06 -2.91 -0.02 2.10 15 29 H 0.16 3.51 6.53 -2.91 -0.02 3.49 15 Total: -1.00 -64.26 274.75 2.52 -61.73 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.57 Total: 14.00 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 4.00 Total: 2.90 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -3.94 Total: -94.05 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.06 Total: -27.12 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -64.26 2.52 -61.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337084.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.294 kcal (2) G-P(sol) polarization free energy of solvation -64.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds