Wall clock time and date at job start Mon Mar 30 2020 00:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47040 * 2 1 4 4 C 1.50698 * 109.47136 * 240.00018 * 2 1 3 5 5 H 1.08001 * 120.00114 * 239.99845 * 4 2 1 6 6 C 1.37878 * 119.99864 * 60.00218 * 4 2 1 7 7 N 1.31513 * 120.00138 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99989 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47061 * 60.00191 * 8 6 4 10 10 H 1.48508 * 109.46879 * 179.97438 * 8 6 4 11 11 H 1.48490 * 109.47403 * 299.99722 * 8 6 4 12 12 N 1.46501 * 109.47198 * 120.00200 * 2 1 3 13 13 C 1.34781 * 119.99989 * 275.00004 * 12 2 1 14 14 O 1.21513 * 119.99674 * 359.97438 * 13 12 2 15 15 C 1.48153 * 119.99638 * 180.02562 * 13 12 2 16 16 C 1.39875 * 120.91026 * 180.02562 * 15 13 12 17 17 C 1.38086 * 119.03100 * 180.02562 * 16 15 13 18 18 N 1.31850 * 120.91973 * 359.97438 * 17 16 15 19 19 C 1.31885 * 122.02661 * 0.03723 * 18 17 16 20 20 Cl 1.73607 * 119.56444 * 179.97438 * 19 18 17 21 21 C 1.38344 * 120.86258 * 359.95940 * 19 18 17 22 22 H 1.08999 * 109.47019 * 59.99979 * 1 2 3 23 23 H 1.09000 * 109.47040 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46963 * 299.99501 * 1 2 3 25 25 H 0.97004 * 120.00472 * 179.97438 * 7 6 4 26 26 H 0.97002 * 120.00280 * 94.99982 * 12 2 1 27 27 H 1.08001 * 120.48031 * 359.74747 * 16 15 13 28 28 H 1.08003 * 119.53899 * 179.97438 * 17 16 15 29 29 H 1.08002 * 120.50234 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0079 9 1 1.8279 -2.5197 -4.0082 10 1 1.8268 -0.4197 -5.2204 11 1 3.8074 -1.1188 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0183 2.3572 14 8 1.8585 1.1608 2.4116 15 6 2.6414 -0.7167 3.5666 16 6 2.7819 -0.0377 4.7814 17 6 3.2467 -0.7266 5.8843 18 7 3.5557 -2.0058 5.8033 19 6 3.4386 -2.6838 4.6781 20 17 3.8645 -4.3664 4.6436 21 6 2.9804 -2.0716 3.5252 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 0.7087 1.1614 -3.4844 26 1 2.2490 -1.6318 1.1526 27 1 2.5347 1.0111 4.8546 28 1 3.3587 -0.2103 6.8263 29 1 2.8871 -2.6323 2.6068 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050337087.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:01 Heat of formation + Delta-G solvation = -12.776308 kcal Electronic energy + Delta-G solvation = -15883.012491 eV Core-core repulsion = 13024.909473 eV Total energy + Delta-G solvation = -2858.103018 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.55957 -38.68281 -36.76669 -35.00895 -33.14504 -32.24962 -31.15609 -28.96876 -25.37487 -24.80883 -23.64254 -21.41224 -19.81254 -18.46219 -16.83517 -16.36027 -15.92124 -15.33782 -15.16166 -14.87694 -14.27828 -14.20654 -13.98219 -13.11878 -12.55890 -12.03296 -11.91469 -11.77868 -11.47959 -11.18589 -11.03651 -10.86961 -10.43861 -10.31326 -10.06492 -10.00760 -9.36775 -9.17706 -9.15805 -8.64683 -8.11814 -6.20038 -4.30277 0.61227 0.74818 1.62722 3.07610 3.21678 3.27192 3.27976 3.68143 3.82008 4.24298 4.30067 4.62624 4.77029 5.02690 5.04833 5.12840 5.33379 5.59949 5.95593 6.23221 6.71809 6.84233 7.02484 7.24762 7.40535 7.46996 7.58549 7.79066 8.04057 8.43620 8.62887 8.86268 9.37151 10.85919 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.026266 B = 0.005309 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.756402 B = 5272.407072 C = 6118.518574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.694 5.694 13 C 0.541 3.459 14 O -0.538 6.538 15 C -0.061 4.061 16 C -0.118 4.118 17 C 0.113 3.887 18 N -0.472 5.472 19 C 0.170 3.830 20 Cl -0.030 7.030 21 C -0.126 4.126 22 H 0.093 0.907 23 H 0.028 0.972 24 H 0.016 0.984 25 H 0.266 0.734 26 H 0.390 0.610 27 H 0.156 0.844 28 H 0.171 0.829 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 -6.257 12.723 14.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.342 5.342 13 C 0.325 3.675 14 O -0.417 6.417 15 C -0.072 4.072 16 C -0.138 4.138 17 C -0.044 4.044 18 N -0.184 5.184 19 C 0.006 3.994 20 Cl -0.002 7.002 21 C -0.148 4.148 22 H 0.111 0.889 23 H 0.047 0.953 24 H 0.035 0.965 25 H 0.076 0.924 26 H 0.224 0.776 27 H 0.174 0.826 28 H 0.188 0.812 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.731 -5.858 13.270 14.977 hybrid contribution 0.166 -0.718 -1.576 1.740 sum 3.896 -6.577 11.694 13.971 Atomic orbital electron populations 1.22094 0.98083 0.99365 1.01140 1.18865 0.91268 0.94087 0.79528 0.92980 1.21146 1.32875 1.13450 0.90194 0.91984 1.24878 0.94677 0.94914 0.99090 1.69881 1.35559 1.22327 1.24187 0.86477 0.79215 0.79603 0.81652 1.20076 1.21061 1.20098 1.46563 1.63634 1.13687 1.10272 1.18027 0.79587 0.86835 0.83078 1.90754 1.51041 1.15177 1.84720 1.20819 0.97329 0.93115 0.95968 1.22451 0.96956 1.02613 0.91827 1.22682 0.94500 0.88310 0.98918 1.66861 1.15288 1.09386 1.26836 1.21492 0.99061 0.88354 0.90529 1.98411 1.91551 1.11908 1.98325 1.22105 0.98977 0.94713 0.98984 0.88858 0.95272 0.96530 0.92374 0.77647 0.82641 0.81156 0.83121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.22 15 2 C 0.26 6.48 2.56 -69.08 -0.18 6.30 15 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 15 4 C -0.54 -13.82 8.73 -34.44 -0.30 -14.12 15 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 15 7 N -0.88 -24.23 11.32 55.43 0.63 -23.60 15 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 15 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 10 H -0.29 -6.36 7.11 56.52 0.40 -5.96 15 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 12 N -0.69 -13.89 5.03 -55.78 -0.28 -14.17 15 13 C 0.54 10.43 7.76 -12.19 -0.09 10.34 15 14 O -0.54 -12.23 16.11 5.35 0.09 -12.14 15 15 C -0.06 -0.91 5.91 -104.66 -0.62 -1.53 15 16 C -0.12 -1.50 9.68 -39.02 -0.38 -1.88 15 17 C 0.11 1.24 11.17 -17.60 -0.20 1.04 15 18 N -0.47 -6.12 10.31 -10.41 -0.11 -6.22 15 19 C 0.17 2.21 7.27 -17.49 -0.13 2.08 15 20 Cl -0.03 -0.35 29.10 -51.86 -1.51 -1.86 15 21 C -0.13 -1.67 9.38 -38.98 -0.37 -2.04 15 22 H 0.09 2.44 6.07 -51.93 -0.32 2.13 15 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 25 H 0.27 6.95 8.31 -40.82 -0.34 6.62 15 26 H 0.39 6.68 6.68 -40.82 -0.27 6.41 15 27 H 0.16 1.85 7.74 -52.49 -0.41 1.45 15 28 H 0.17 1.24 8.06 -52.48 -0.42 0.82 15 29 H 0.15 1.77 6.54 -52.49 -0.34 1.42 15 LS Contribution 274.75 15.07 4.14 4.14 Total: -1.00 -29.56 274.75 -6.61 -36.17 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -2.54 Total: 3.89 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.01 Total: -1.33 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.24 Total: -44.00 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.51 Total: -1.86 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.56 -6.61 -36.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337087.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.391 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds