Wall clock time and date at job start Mon Mar 30 2020 00:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46821 * 2 1 4 4 C 1.50702 * 109.47225 * 240.00613 * 2 1 3 5 5 H 1.07999 * 119.99590 * 239.99885 * 4 2 1 6 6 C 1.37878 * 120.00316 * 59.99435 * 4 2 1 7 7 N 1.31514 * 119.99999 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99716 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47505 * 60.00230 * 8 6 4 10 10 H 1.48507 * 109.46624 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47282 * 299.99752 * 8 6 4 12 12 N 1.46489 * 109.47269 * 119.99902 * 2 1 3 13 13 C 1.34775 * 120.00202 * 275.00568 * 12 2 1 14 14 O 1.21559 * 120.00419 * 359.97438 * 13 12 2 15 15 C 1.47791 * 120.00101 * 180.02562 * 13 12 2 16 16 C 1.40088 * 120.54491 * 179.97438 * 15 13 12 17 17 C 1.38250 * 118.30359 * 180.27117 * 16 15 13 18 18 C 1.38558 * 119.29473 * 359.50167 * 17 16 15 19 19 Cl 1.73605 * 119.47433 * 180.23080 * 18 17 16 20 20 N 1.32036 * 121.04476 * 0.50972 * 18 17 16 21 21 C 1.31688 * 121.86208 * 359.74561 * 20 18 17 22 22 H 1.09001 * 109.47292 * 60.00159 * 1 2 3 23 23 H 1.09000 * 109.46956 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47421 * 300.00109 * 1 2 3 25 25 H 0.96999 * 120.00035 * 180.02562 * 7 6 4 26 26 H 0.97001 * 119.99810 * 94.99781 * 12 2 1 27 27 H 1.08002 * 120.84444 * 359.97438 * 16 15 13 28 28 H 1.08004 * 120.35257 * 179.74411 * 17 16 15 29 29 H 1.08000 * 119.70816 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0079 10 1 1.8269 -0.4196 -5.2205 11 1 3.8064 -1.1206 -4.0082 12 7 2.0183 -0.6905 1.1961 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1613 2.4117 15 6 2.6402 -0.7148 3.5636 16 6 2.7788 -0.0269 4.7761 17 6 3.2496 -0.7225 5.8742 18 6 3.5565 -2.0674 5.7443 19 17 4.1424 -2.9468 7.1217 20 7 3.4156 -2.6894 4.5882 21 6 2.9757 -2.0681 3.5136 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.7088 1.1615 -3.4844 26 1 2.2490 -1.6317 1.1525 27 1 2.5288 1.0211 4.8499 28 1 3.3732 -0.2238 6.8242 29 1 2.8734 -2.6110 2.5856 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050337183.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:47 Heat of formation + Delta-G solvation = -13.403704 kcal Electronic energy + Delta-G solvation = -15805.189854 eV Core-core repulsion = 12947.059630 eV Total energy + Delta-G solvation = -2858.130224 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.56981 -38.61531 -36.82618 -34.99200 -32.75904 -32.67820 -31.34807 -28.77976 -25.33988 -24.53763 -23.82174 -21.35627 -19.77822 -18.29434 -17.23276 -16.83852 -15.88584 -15.19122 -14.89479 -14.88397 -14.27552 -13.95479 -13.51059 -13.17827 -12.67763 -12.44787 -11.94020 -11.72674 -11.56903 -11.16295 -11.01312 -10.83886 -10.41057 -10.29673 -10.14813 -10.01510 -9.28791 -9.18635 -9.11856 -8.62265 -8.07401 -6.18176 -4.28205 0.42588 0.95898 1.55304 3.02307 3.23009 3.28486 3.29389 3.78729 3.86887 4.20097 4.31019 4.60825 4.69226 4.86784 5.13563 5.16453 5.31845 5.69095 5.94341 6.18716 6.74543 6.86949 7.05344 7.28790 7.42786 7.44097 7.60851 7.81802 8.06527 8.47720 8.66424 8.90644 9.39162 10.87752 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.040360 B = 0.004378 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.596473 B = 6394.265682 C = 6900.267441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.697 5.697 13 C 0.546 3.454 14 O -0.544 6.544 15 C -0.168 4.168 16 C -0.010 4.010 17 C -0.161 4.161 18 C 0.184 3.816 19 Cl -0.033 7.033 20 N -0.481 5.481 21 C 0.150 3.850 22 H 0.092 0.908 23 H 0.028 0.972 24 H 0.015 0.985 25 H 0.266 0.734 26 H 0.389 0.611 27 H 0.158 0.842 28 H 0.150 0.850 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 -5.183 14.804 16.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.344 5.344 13 C 0.330 3.670 14 O -0.424 6.424 15 C -0.174 4.174 16 C -0.037 4.037 17 C -0.182 4.182 18 C 0.020 3.980 19 Cl -0.004 7.004 20 N -0.192 5.192 21 C -0.008 4.008 22 H 0.111 0.889 23 H 0.047 0.953 24 H 0.035 0.965 25 H 0.076 0.924 26 H 0.222 0.778 27 H 0.176 0.824 28 H 0.168 0.832 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.921 -5.170 14.704 16.072 hybrid contribution 0.271 -0.227 -0.687 0.773 sum 4.192 -5.397 14.017 15.594 Atomic orbital electron populations 1.22093 0.98158 0.99333 1.01092 1.18835 0.91210 0.94070 0.79581 0.93045 1.21153 1.32806 1.13413 0.90215 0.91987 1.24883 0.94717 0.94927 0.99097 1.69884 1.35613 1.22320 1.24142 0.86480 0.79196 0.79601 0.81674 1.20083 1.21094 1.20129 1.46540 1.64002 1.13569 1.10336 1.17900 0.79282 0.86806 0.83000 1.90753 1.51402 1.15346 1.84857 1.21510 1.03464 0.95760 0.96620 1.21777 0.90769 1.01195 0.89948 1.21819 1.02356 0.92946 1.01097 1.21847 0.97074 0.89587 0.89485 1.98407 1.86303 1.77389 1.38344 1.66996 1.14205 1.39608 0.98368 1.22989 0.91137 0.90879 0.95822 0.88939 0.95289 0.96540 0.92412 0.77760 0.82424 0.83193 0.81117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.22 15 2 C 0.26 6.48 2.56 -69.09 -0.18 6.30 15 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 15 4 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 15 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 15 7 N -0.88 -24.26 11.32 55.43 0.63 -23.63 15 8 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 15 9 H -0.28 -6.05 7.11 56.52 0.40 -5.64 15 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 15 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 12 N -0.70 -13.81 5.02 -55.90 -0.28 -14.10 15 13 C 0.55 10.45 7.74 -12.35 -0.10 10.36 15 14 O -0.54 -12.35 16.08 5.31 0.09 -12.27 15 15 C -0.17 -2.50 5.89 -104.82 -0.62 -3.12 15 16 C -0.01 -0.13 9.71 -38.88 -0.38 -0.51 15 17 C -0.16 -1.74 9.86 -39.46 -0.39 -2.13 15 18 C 0.18 2.25 7.27 -17.35 -0.13 2.13 15 19 Cl -0.03 -0.35 29.10 -51.86 -1.51 -1.86 15 20 N -0.48 -6.58 10.32 -10.01 -0.10 -6.68 15 21 C 0.15 2.01 10.71 -17.14 -0.18 1.83 15 22 H 0.09 2.42 6.07 -51.93 -0.32 2.11 15 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 26 H 0.39 6.51 6.60 -40.82 -0.27 6.24 15 27 H 0.16 1.88 7.74 -52.49 -0.41 1.48 15 28 H 0.15 1.15 8.06 -52.48 -0.42 0.73 15 29 H 0.17 1.96 6.42 -52.49 -0.34 1.63 15 LS Contribution 274.54 15.07 4.14 4.14 Total: -1.00 -29.61 274.54 -6.61 -36.22 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -2.53 Total: 3.77 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.02 Total: -0.77 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.24 Total: -44.41 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.51 Total: -1.86 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.61 -6.61 -36.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337183.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.814 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds