Wall clock time and date at job start Mon Mar 30 2020 00:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46821 * 2 1 4 4 C 1.50702 * 109.47225 * 240.00613 * 2 1 3 5 5 H 1.07999 * 119.99590 * 239.99885 * 4 2 1 6 6 C 1.37878 * 120.00316 * 59.99435 * 4 2 1 7 7 N 1.31514 * 119.99999 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99716 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47505 * 60.00230 * 8 6 4 10 10 H 1.48507 * 109.46624 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47282 * 299.99752 * 8 6 4 12 12 N 1.46489 * 109.47269 * 119.99902 * 2 1 3 13 13 C 1.34775 * 120.00202 * 275.00568 * 12 2 1 14 14 O 1.21559 * 120.00419 * 359.97438 * 13 12 2 15 15 C 1.47791 * 120.00101 * 180.02562 * 13 12 2 16 16 C 1.40088 * 120.54491 * 179.97438 * 15 13 12 17 17 C 1.38250 * 118.30359 * 180.27117 * 16 15 13 18 18 C 1.38558 * 119.29473 * 359.50167 * 17 16 15 19 19 Cl 1.73605 * 119.47433 * 180.23080 * 18 17 16 20 20 N 1.32036 * 121.04476 * 0.50972 * 18 17 16 21 21 C 1.31688 * 121.86208 * 359.74561 * 20 18 17 22 22 H 1.09001 * 109.47292 * 60.00159 * 1 2 3 23 23 H 1.09000 * 109.46956 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47421 * 300.00109 * 1 2 3 25 25 H 0.96999 * 120.00035 * 180.02562 * 7 6 4 26 26 H 0.97001 * 119.99810 * 94.99781 * 12 2 1 27 27 H 1.08002 * 120.84444 * 359.97438 * 16 15 13 28 28 H 1.08004 * 120.35257 * 179.74411 * 17 16 15 29 29 H 1.08000 * 119.70816 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0079 10 1 1.8269 -0.4196 -5.2205 11 1 3.8064 -1.1206 -4.0082 12 7 2.0183 -0.6905 1.1961 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1613 2.4117 15 6 2.6402 -0.7148 3.5636 16 6 2.7788 -0.0269 4.7761 17 6 3.2496 -0.7225 5.8742 18 6 3.5565 -2.0674 5.7443 19 17 4.1424 -2.9468 7.1217 20 7 3.4156 -2.6894 4.5882 21 6 2.9757 -2.0681 3.5136 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.7088 1.1615 -3.4844 26 1 2.2490 -1.6317 1.1525 27 1 2.5288 1.0211 4.8499 28 1 3.3732 -0.2238 6.8242 29 1 2.8734 -2.6110 2.5856 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337183.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:47 Heat of formation + Delta-G solvation = -33.089741 kcal Electronic energy + Delta-G solvation = -15806.043505 eV Core-core repulsion = 12947.059630 eV Total energy + Delta-G solvation = -2858.983875 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.71464 -40.08576 -37.74308 -36.80703 -34.48771 -33.78618 -32.64753 -30.50621 -27.34398 -25.77825 -24.84906 -23.00124 -21.43804 -19.68907 -18.45127 -18.04457 -17.55251 -16.90898 -16.25248 -16.14430 -15.68735 -15.29303 -14.88890 -14.47622 -14.28130 -13.80783 -13.63067 -13.02417 -12.92334 -12.77952 -12.70991 -12.43259 -12.26739 -12.15910 -11.27086 -11.16351 -11.11104 -10.70236 -10.57844 -10.22575 -9.80704 -8.17441 -6.34881 -0.65003 -0.01549 0.62315 1.47082 1.48513 1.56220 1.75152 2.26398 2.49692 2.63211 3.13469 3.22788 3.58312 3.70790 3.83216 3.89698 4.44694 4.65385 4.76375 4.91298 4.93558 5.08159 5.20749 5.40727 5.55663 5.66550 5.86816 6.08319 6.42092 6.70786 6.82446 7.27062 7.42403 8.88612 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.040360 B = 0.004378 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.596473 B = 6394.265682 C = 6900.267441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.004 0.996 4 C -0.549 4.549 5 H 0.076 0.924 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.971 3.029 9 H -0.264 1.264 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.694 5.694 13 C 0.548 3.452 14 O -0.587 6.587 15 C -0.185 4.185 16 C -0.008 4.008 17 C -0.145 4.145 18 C 0.181 3.819 19 Cl -0.015 7.015 20 N -0.496 5.496 21 C 0.157 3.843 22 H 0.068 0.932 23 H 0.042 0.958 24 H 0.014 0.986 25 H 0.266 0.734 26 H 0.405 0.595 27 H 0.163 0.837 28 H 0.187 0.813 29 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.905 -6.870 15.961 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.022 0.978 4 C -0.587 4.587 5 H 0.094 0.906 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.189 1.189 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.343 5.343 13 C 0.335 3.665 14 O -0.469 6.469 15 C -0.191 4.191 16 C -0.035 4.035 17 C -0.166 4.166 18 C 0.017 3.983 19 Cl 0.014 6.986 20 N -0.207 5.207 21 C -0.001 4.001 22 H 0.087 0.913 23 H 0.061 0.939 24 H 0.033 0.967 25 H 0.075 0.925 26 H 0.242 0.758 27 H 0.181 0.819 28 H 0.204 0.796 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.877 -6.900 15.894 18.001 hybrid contribution 0.016 0.295 -0.895 0.942 sum 4.893 -6.605 14.999 17.104 Atomic orbital electron populations 1.21920 0.98019 0.99694 0.99824 1.18421 0.91297 0.92106 0.81408 0.97798 1.21507 1.32802 1.13738 0.90665 0.90636 1.25774 0.94844 0.95565 1.02270 1.70035 1.36819 1.23807 1.24728 0.85405 0.78627 0.78739 0.77622 1.18851 1.21289 1.19638 1.46240 1.64262 1.14272 1.09521 1.18430 0.78009 0.86326 0.83732 1.90725 1.53191 1.17349 1.85649 1.21116 1.06076 0.96470 0.95428 1.21931 0.90279 1.01557 0.89720 1.22099 1.00461 0.92254 1.01754 1.22217 0.96192 0.90353 0.89581 1.98419 1.85933 1.77100 1.37143 1.67070 1.14878 1.39922 0.98869 1.23112 0.90343 0.90182 0.96494 0.91301 0.93926 0.96652 0.92500 0.75835 0.81949 0.79606 0.79730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.68 9.26 71.98 0.67 -6.02 15 2 C 0.27 13.60 2.56 44.25 0.11 13.71 15 3 H 0.00 0.24 7.58 -2.39 -0.02 0.23 15 4 C -0.55 -28.17 8.73 25.60 0.22 -27.94 15 5 H 0.08 3.58 7.74 -2.91 -0.02 3.56 15 6 C 0.02 0.83 5.30 84.65 0.45 1.28 15 7 N -0.92 -51.42 11.32 21.45 0.24 -51.17 15 8 Si 0.97 41.08 29.54 68.60 2.03 43.11 15 9 H -0.26 -10.61 7.11 99.48 0.71 -9.90 15 10 H -0.29 -12.14 7.11 99.48 0.71 -11.43 15 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 12 N -0.69 -27.64 5.02 -449.05 -2.26 -29.89 15 13 C 0.55 21.18 7.74 86.77 0.67 21.85 15 14 O -0.59 -27.44 16.08 -3.90 -0.06 -27.51 15 15 C -0.19 -5.34 5.89 -19.99 -0.12 -5.46 15 16 C -0.01 -0.20 9.71 22.72 0.22 0.02 15 17 C -0.15 -2.69 9.86 22.35 0.22 -2.47 15 18 C 0.18 3.91 7.27 84.74 0.62 4.53 15 19 Cl -0.01 -0.27 29.10 -2.72 -0.08 -0.34 15 20 N -0.50 -12.46 10.32 -185.57 -1.92 -14.38 15 21 C 0.16 3.95 10.71 85.02 0.91 4.86 15 22 H 0.07 3.72 6.07 -2.39 -0.01 3.71 15 23 H 0.04 1.92 8.14 -2.39 -0.02 1.90 15 24 H 0.01 0.70 8.14 -2.39 -0.02 0.68 15 25 H 0.27 14.18 8.31 -92.71 -0.77 13.41 15 26 H 0.41 13.25 6.60 -92.71 -0.61 12.63 15 27 H 0.16 3.68 7.74 -2.91 -0.02 3.66 15 28 H 0.19 2.07 8.06 -2.91 -0.02 2.04 15 29 H 0.19 3.92 6.42 -2.91 -0.02 3.90 15 Total: -1.00 -64.42 274.54 2.51 -61.91 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.58 Total: 13.90 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 3.97 Total: 4.37 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -3.93 Total: -95.45 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.06 Total: -27.51 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.34 kcal Total: -64.42 2.51 -61.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337183.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.823 kcal (2) G-P(sol) polarization free energy of solvation -64.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds