Wall clock time and date at job start Mon Mar 30 2020 00:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21513 * 120.00374 * 359.97438 * 13 12 2 15 15 C 1.48171 * 120.00242 * 179.97438 * 13 12 2 16 16 C 1.39263 * 119.71749 * 179.72565 * 15 13 12 17 17 C 1.38627 * 119.08855 * 179.73062 * 16 15 13 18 18 C 1.38562 * 118.50973 * 0.53350 * 17 16 15 19 19 C 1.38738 * 119.33482 * 359.72738 * 18 17 16 20 20 Cl 1.73596 * 119.56107 * 179.97438 * 19 18 17 21 21 N 1.31617 * 120.87084 * 0.02562 * 19 18 17 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 27 27 H 1.08001 * 120.45489 * 359.97438 * 16 15 13 28 28 H 1.08001 * 120.74678 * 180.24019 * 17 16 15 29 29 H 1.07990 * 120.33403 * 179.74901 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8585 1.1607 2.4116 15 6 2.6405 -0.7170 3.5670 16 6 2.7767 -0.0151 4.7621 17 6 3.2341 -0.6830 5.8875 18 6 3.5504 -2.0274 5.7758 19 6 3.3958 -2.6626 4.5521 20 17 3.7909 -4.3467 4.4055 21 7 2.9546 -2.0051 3.5008 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 2.2491 -1.6318 1.1525 27 1 2.5255 1.0341 4.8125 28 1 3.3461 -0.1658 6.8290 29 1 3.9132 -2.5753 6.6328 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051074257.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:28 Heat of formation + Delta-G solvation = -33.299389 kcal Electronic energy + Delta-G solvation = -15906.696628 eV Core-core repulsion = 13047.703662 eV Total energy + Delta-G solvation = -2858.992966 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.69434 -40.02586 -37.66951 -36.81479 -34.54519 -33.69384 -32.38440 -30.71692 -27.38177 -25.99875 -24.54661 -23.09819 -21.41824 -19.78960 -18.17067 -18.05361 -17.13456 -16.87036 -16.39761 -16.29656 -15.98062 -15.18746 -14.95075 -14.44381 -14.33746 -13.75144 -13.17482 -13.03978 -12.93474 -12.79219 -12.69538 -12.37307 -12.30983 -12.17974 -11.43924 -11.17161 -11.10349 -10.67442 -10.60546 -10.17688 -9.81458 -8.20190 -6.37820 -0.52012 0.00321 0.69368 1.43433 1.45846 1.53776 1.68463 2.23398 2.45789 2.68085 3.09773 3.16769 3.72387 3.85998 3.93544 4.19339 4.36117 4.69405 4.88024 4.88168 4.97284 5.03609 5.34907 5.37115 5.53337 5.62612 5.82135 6.04634 6.36966 6.67076 6.85036 7.22878 7.38707 8.86165 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.025986 B = 0.005461 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.239688 B = 5125.759032 C = 5981.188496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H 0.007 0.993 4 C -0.552 4.552 5 H 0.068 0.932 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.973 3.027 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.271 1.271 12 N -0.685 5.685 13 C 0.549 3.451 14 O -0.581 6.581 15 C 0.081 3.919 16 C -0.114 4.114 17 C -0.048 4.048 18 C -0.119 4.119 19 C 0.155 3.845 20 Cl -0.024 7.024 21 N -0.481 5.481 22 H 0.016 0.984 23 H 0.037 0.963 24 H 0.072 0.928 25 H 0.268 0.732 26 H 0.407 0.593 27 H 0.158 0.842 28 H 0.203 0.797 29 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.813 -7.805 18.522 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.590 4.590 5 H 0.086 0.914 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.797 3.203 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.196 1.196 12 N -0.332 5.332 13 C 0.335 3.665 14 O -0.462 6.462 15 C -0.057 4.057 16 C -0.135 4.135 17 C -0.073 4.073 18 C -0.139 4.139 19 C -0.012 4.012 20 Cl 0.004 6.996 21 N -0.196 5.196 22 H 0.035 0.965 23 H 0.056 0.944 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.242 0.758 27 H 0.175 0.825 28 H 0.220 0.780 29 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.437 -7.422 17.530 19.797 hybrid contribution 0.253 -0.329 -0.584 0.717 sum 5.690 -7.750 16.946 19.483 Atomic orbital electron populations 1.21902 0.97819 0.99485 1.00004 1.18498 0.91486 0.92130 0.81406 0.97490 1.21469 1.32976 1.13664 0.90921 0.91436 1.25766 0.94739 0.95569 1.02148 1.70021 1.36687 1.23688 1.24858 0.85386 0.78649 0.78695 0.77553 1.19039 1.20653 1.19646 1.46280 1.62912 1.14534 1.09459 1.18438 0.78348 0.86084 0.83679 1.90710 1.53471 1.16578 1.85397 1.20921 1.00810 0.89159 0.94768 1.22453 0.96511 1.02785 0.91734 1.22157 0.92550 0.93059 0.99555 1.22530 0.98536 0.95797 0.97065 1.22042 0.99356 0.88761 0.91086 1.98414 1.91557 1.11317 1.98316 1.66690 1.10969 1.08748 1.33169 0.96501 0.94387 0.90891 0.92313 0.75751 0.82470 0.78038 0.79158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.02 9.26 71.98 0.67 -6.35 15 2 C 0.27 14.61 2.56 44.25 0.11 14.72 15 3 H 0.01 0.45 7.58 -2.39 -0.02 0.43 15 4 C -0.55 -30.73 8.73 25.60 0.22 -30.51 15 5 H 0.07 3.60 7.74 -2.91 -0.02 3.58 15 6 C 0.02 1.01 5.30 84.65 0.45 1.45 15 7 N -0.91 -53.13 11.32 21.45 0.24 -52.89 15 8 Si 0.97 43.18 29.54 68.60 2.03 45.21 15 9 H -0.27 -11.31 7.11 99.48 0.71 -10.61 15 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 11 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 12 N -0.68 -31.99 5.06 -448.68 -2.27 -34.26 15 13 C 0.55 24.09 7.78 86.88 0.68 24.77 15 14 O -0.58 -28.81 15.98 -3.76 -0.06 -28.87 15 15 C 0.08 2.71 6.75 41.89 0.28 2.99 15 16 C -0.11 -2.78 9.63 22.61 0.22 -2.56 15 17 C -0.05 -0.68 10.17 22.44 0.23 -0.46 15 18 C -0.12 -1.79 9.88 22.47 0.22 -1.57 15 19 C 0.15 3.68 7.27 84.84 0.62 4.29 15 20 Cl -0.02 -0.52 29.10 -2.72 -0.08 -0.60 15 21 N -0.48 -15.22 9.52 -175.86 -1.67 -16.90 15 22 H 0.02 0.82 8.14 -2.39 -0.02 0.81 15 23 H 0.04 1.86 8.14 -2.39 -0.02 1.84 15 24 H 0.07 4.12 6.07 -2.38 -0.01 4.11 15 25 H 0.27 14.65 8.31 -92.71 -0.77 13.88 15 26 H 0.41 17.69 7.87 -92.71 -0.73 16.97 15 27 H 0.16 3.75 7.64 -2.91 -0.02 3.72 15 28 H 0.20 0.88 8.06 -2.91 -0.02 0.85 15 29 H 0.19 1.26 8.06 -2.92 -0.02 1.23 15 Total: -1.00 -69.60 276.77 2.34 -67.26 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.46 Total: 14.25 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 3.70 Total: 6.79 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -3.70 Total: -104.04 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.06 Total: -28.87 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.60 kcal Total: -69.60 2.34 -67.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051074257.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.961 kcal (2) G-P(sol) polarization free energy of solvation -69.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds