Wall clock time and date at job start Sun Mar 29 2020 23:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99598 * 2 1 4 4 H 1.48506 * 109.46844 * 269.99784 * 3 2 1 5 5 H 1.48497 * 109.47530 * 29.99534 * 3 2 1 6 6 H 1.48501 * 109.46934 * 150.00223 * 3 2 1 7 7 C 1.37876 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00761 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99591 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47280 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47506 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00084 * 180.02562 * 11 10 9 13 13 O 1.21508 * 120.00135 * 0.02562 * 12 11 10 14 14 C 1.48173 * 119.99581 * 180.02562 * 12 11 10 15 15 C 1.39260 * 119.71385 * 179.97438 * 14 12 11 16 16 C 1.38746 * 119.03798 * 179.69762 * 15 14 12 17 17 Cl 1.73608 * 120.76983 * 180.25578 * 16 15 14 18 18 C 1.38768 * 118.46175 * 0.27792 * 16 15 14 19 19 C 1.38492 * 119.33914 * 359.97438 * 18 16 15 20 20 N 1.31550 * 120.91445 * 0.02562 * 19 18 16 21 21 H 0.96998 * 120.00325 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47159 * 60.00030 * 9 7 2 23 23 H 1.08998 * 109.47350 * 300.00450 * 9 7 2 24 24 H 1.09001 * 109.46636 * 60.00373 * 10 9 7 25 25 H 1.08998 * 109.47408 * 300.00551 * 10 9 7 26 26 H 0.97007 * 119.99306 * 0.02562 * 11 10 9 27 27 H 1.08002 * 120.48310 * 359.97438 * 15 14 12 28 28 H 1.08004 * 120.32586 * 179.97438 * 18 16 15 29 29 H 1.08000 * 119.54160 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 7 5.4866 -2.6365 0.0002 12 6 6.1605 -3.8037 0.0006 13 8 5.5530 -4.8560 0.0015 14 6 7.6422 -3.8036 0.0000 15 6 8.3326 -5.0130 0.0009 16 6 9.7199 -4.9965 -0.0061 17 17 10.6257 -6.4776 -0.0118 18 6 10.3667 -3.7688 -0.0079 19 6 9.6149 -2.6057 -0.0032 20 7 8.3002 -2.6508 0.0034 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6796 0.8895 23 1 3.8746 -0.6807 -0.8904 24 1 3.6580 -3.1512 -0.8880 25 1 3.6586 -3.1494 0.8920 26 1 5.9716 -1.7963 -0.0009 27 1 7.7959 -5.9502 0.0026 28 1 11.4457 -3.7209 -0.0129 29 1 10.1150 -1.6485 -0.0042 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137624.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:45:22 Heat of formation + Delta-G solvation = -14.901870 kcal Electronic energy + Delta-G solvation = -15381.383545 eV Core-core repulsion = 12523.188355 eV Total energy + Delta-G solvation = -2858.195190 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.81788 -38.87357 -37.13217 -35.12152 -33.01682 -32.45353 -31.86401 -30.05667 -25.82482 -24.10441 -23.80694 -20.91603 -20.64851 -18.23928 -17.28751 -16.79903 -16.34765 -15.41380 -15.34630 -15.11884 -14.35637 -14.25589 -14.14661 -13.56544 -13.25819 -12.69147 -12.57998 -12.52991 -11.51437 -11.49721 -11.22202 -10.47578 -10.40839 -10.23378 -9.94772 -9.90885 -9.65703 -9.64058 -9.32430 -8.66067 -8.56582 -6.10558 -4.10844 0.26410 0.63572 1.47265 2.65218 3.26807 3.27582 3.34664 3.36470 3.61185 3.94285 4.38101 4.38888 4.41298 4.56889 5.03458 5.15567 5.22474 5.29655 5.49477 6.00966 6.10050 6.17154 6.53748 6.65403 7.10476 7.22646 7.32728 7.66013 7.83926 8.36581 8.45744 8.93352 9.49503 11.02304 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.048127 B = 0.003831 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.654534 B = 7307.649572 C = 7868.848089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.127 3.873 11 N -0.700 5.700 12 C 0.560 3.440 13 O -0.535 6.535 14 C 0.104 3.896 15 C -0.108 4.108 16 C 0.000 4.000 17 Cl -0.047 7.047 18 C -0.149 4.149 19 C 0.115 3.885 20 N -0.454 5.454 21 H 0.265 0.735 22 H 0.023 0.977 23 H 0.019 0.981 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.408 0.592 27 H 0.160 0.840 28 H 0.150 0.850 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.222 -6.717 -0.002 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.005 3.995 11 N -0.349 5.349 12 C 0.343 3.657 13 O -0.412 6.412 14 C -0.035 4.035 15 C -0.129 4.129 16 C -0.035 4.035 17 Cl -0.018 7.018 18 C -0.170 4.170 19 C -0.045 4.045 20 N -0.166 5.166 21 H 0.074 0.926 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.243 0.757 27 H 0.177 0.823 28 H 0.168 0.832 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 23.134 -6.705 0.007 24.086 hybrid contribution 1.255 0.426 -0.024 1.325 sum 24.389 -6.278 -0.017 25.184 Atomic orbital electron populations 1.69905 1.06279 1.27063 1.50381 1.24997 0.94774 0.99167 0.94341 0.86755 0.80324 0.83503 0.78551 1.20208 1.21272 1.18969 1.20902 0.88555 0.94926 1.51749 0.90567 1.19805 0.98008 0.91144 0.97075 1.21644 0.75313 1.00563 1.01963 1.46214 1.09268 1.08083 1.71314 1.17747 0.84883 0.84874 0.78184 1.90794 1.68432 1.31286 1.50722 1.21426 0.95315 0.88477 0.98240 1.22085 0.92203 1.00915 0.97738 1.21243 0.92304 0.88684 1.01268 1.98410 1.73871 1.32943 1.96533 1.22327 1.02493 0.91444 1.00731 1.22889 0.88735 0.98383 0.94488 1.67624 1.10466 1.28635 1.09873 0.92551 0.95827 0.96261 0.91524 0.91490 0.75695 0.82258 0.83191 0.80954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.96 55.43 0.77 -26.52 15 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 15 3 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.27 -6.02 6.54 56.52 0.37 -5.65 15 7 C -0.52 -14.62 9.66 -34.44 -0.33 -14.96 15 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 15 9 C -0.02 -0.52 4.16 -27.89 -0.12 -0.63 15 10 C 0.13 2.60 5.61 -4.04 -0.02 2.58 15 11 N -0.70 -12.17 5.55 -61.15 -0.34 -12.50 15 12 C 0.56 9.56 7.81 -12.18 -0.10 9.46 15 13 O -0.54 -10.61 16.32 5.36 0.09 -10.52 15 14 C 0.10 1.43 6.75 -83.02 -0.56 0.87 15 15 C -0.11 -1.28 9.45 -39.01 -0.37 -1.65 15 16 C 0.00 0.00 6.37 -39.20 -0.25 -0.25 15 17 Cl -0.05 -0.40 29.02 -51.86 -1.50 -1.90 15 18 C -0.15 -1.13 9.94 -39.29 -0.39 -1.52 15 19 C 0.11 0.97 11.18 -17.58 -0.20 0.77 15 20 N -0.45 -5.50 9.54 -9.82 -0.09 -5.59 15 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 22 H 0.02 0.53 7.20 -51.93 -0.37 0.16 15 23 H 0.02 0.43 7.57 -51.93 -0.39 0.04 15 24 H 0.07 1.41 8.14 -51.93 -0.42 0.99 15 25 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 26 H 0.41 6.40 7.80 -40.82 -0.32 6.08 15 27 H 0.16 1.88 7.64 -52.49 -0.40 1.48 15 28 H 0.15 0.69 8.06 -52.48 -0.42 0.27 15 29 H 0.17 0.86 8.06 -52.49 -0.42 0.44 15 LS Contribution 277.91 15.07 4.19 4.19 Total: -1.00 -31.79 277.91 -6.75 -38.54 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -2.76 Total: 1.32 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.43 Total: -3.44 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.34 Total: -44.62 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.79 -6.75 -38.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137624.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.638 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds