Wall clock time and date at job start Sun Mar 29 2020 23:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 O 1.42102 * 109.46574 * 2 1 4 4 C 1.76195 * 103.00046 * 250.94480 * 2 1 3 5 5 C 1.38376 * 119.84592 * 269.72075 * 4 2 1 6 6 C 1.37932 * 120.15377 * 180.27224 * 5 4 2 7 7 C 1.39658 * 119.84863 * 0.02749 * 6 5 4 8 8 C 1.47660 * 120.15903 * 179.97438 * 7 6 5 9 9 O 1.21508 * 120.00564 * 180.02562 * 8 7 6 10 10 O 1.34736 * 119.99749 * 0.03047 * 8 7 6 11 11 C 1.34853 * 117.00066 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99921 * 359.97438 * 11 10 8 13 13 C 1.38817 * 119.99982 * 179.97438 * 11 10 8 14 14 N 1.31418 * 119.99856 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00202 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46814 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47179 * 119.99321 * 15 13 11 18 18 H 1.48493 * 109.47255 * 239.99874 * 15 13 11 19 19 C 1.39670 * 119.69252 * 359.97438 * 7 6 5 20 20 C 1.37930 * 119.84516 * 0.02562 * 19 7 6 21 21 H 1.09000 * 109.46560 * 169.05547 * 1 2 3 22 22 H 1.08995 * 109.46885 * 289.05409 * 1 2 3 23 23 H 1.09001 * 109.46807 * 49.05693 * 1 2 3 24 24 H 1.08004 * 119.92316 * 0.27804 * 5 4 2 25 25 H 1.07998 * 120.07623 * 179.97438 * 6 5 4 26 26 H 0.97003 * 119.99720 * 180.02562 * 14 13 11 27 27 H 1.08000 * 120.07963 * 180.02562 * 19 7 6 28 28 H 1.07999 * 119.92640 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2105 -0.5605 -1.6227 5 6 2.3711 -1.9136 -1.8639 6 6 2.6869 -2.3589 -3.1305 7 6 2.8452 -1.4407 -4.1708 8 6 3.1838 -1.9098 -5.5293 9 8 3.3213 -1.1084 -6.4323 10 8 3.3403 -3.2266 -5.7678 11 6 3.6485 -3.5879 -7.0299 12 1 3.7586 -2.8343 -7.7957 13 6 3.8244 -4.9284 -7.3448 14 7 3.6910 -5.8453 -6.4129 15 14 4.2506 -5.4290 -9.0933 16 1 4.3426 -4.2170 -9.9466 17 1 5.5542 -6.1402 -9.1007 18 1 3.1934 -6.3274 -9.6226 19 6 2.6816 -0.0764 -3.9203 20 6 2.3658 0.3550 -2.6488 21 1 -0.3632 -1.0090 -0.1951 22 1 -0.3633 0.3355 0.9713 23 1 -0.3633 0.6735 -0.7763 24 1 2.2488 -2.6226 -1.0584 25 1 2.8124 -3.4152 -3.3172 26 1 3.8142 -6.7820 -6.6329 27 1 2.8021 0.6391 -4.7202 28 1 2.2386 1.4095 -2.4537 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060610960.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:06 Heat of formation + Delta-G solvation = -90.213958 kcal Electronic energy + Delta-G solvation = -15694.098564 eV Core-core repulsion = 12802.388552 eV Total energy + Delta-G solvation = -2891.710012 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.51781 -38.11833 -35.78558 -35.24375 -32.34538 -31.11179 -30.77616 -28.91744 -25.82144 -23.69780 -22.43354 -20.34338 -18.11413 -17.86078 -17.26522 -16.30894 -15.30774 -14.95361 -14.81754 -14.59753 -14.33085 -14.25732 -13.71452 -13.26087 -13.21202 -12.73557 -12.45822 -12.22798 -11.83523 -11.63196 -11.32558 -10.96314 -10.58550 -10.48486 -10.30227 -9.95659 -9.19945 -9.02148 -8.79703 -8.71765 -8.43628 -6.58420 -4.19343 0.72669 1.58468 1.79440 2.58754 3.03624 3.11899 3.19539 3.33876 3.81398 3.81902 4.22434 4.42078 4.99929 5.02951 5.03556 5.11203 5.14361 5.58496 5.65691 5.81389 5.92385 6.05922 6.19517 6.40295 6.59868 6.89560 7.06881 7.26438 7.79856 8.57949 8.90325 9.69183 10.58836 Molecular weight = 254.04amu Principal moments of inertia in cm(-1) A = 0.053497 B = 0.004396 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.269077 B = 6367.794847 C = 6716.698751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.332 4.668 3 O -0.862 6.862 4 C -0.457 4.457 5 C -0.056 4.056 6 C -0.092 4.092 7 C -0.047 4.047 8 C 0.422 3.578 9 O -0.551 6.551 10 O -0.200 6.200 11 C -0.372 4.372 12 H 0.100 0.900 13 C 0.042 3.958 14 N -0.854 5.854 15 Si 0.946 3.054 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.089 4.089 20 C -0.066 4.066 21 H 0.112 0.888 22 H 0.103 0.897 23 H 0.080 0.920 24 H 0.140 0.860 25 H 0.148 0.852 26 H 0.272 0.728 27 H 0.135 0.865 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 3.278 13.982 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.529 4.471 3 O -0.857 6.857 4 C -0.554 4.554 5 C -0.075 4.075 6 C -0.112 4.112 7 C -0.048 4.048 8 C 0.270 3.730 9 O -0.450 6.450 10 O -0.107 6.107 11 C -0.448 4.448 12 H 0.117 0.883 13 C -0.164 4.164 14 N -0.490 5.490 15 Si 0.770 3.230 16 H -0.188 1.188 17 H -0.199 1.199 18 H -0.200 1.200 19 C -0.109 4.109 20 C -0.085 4.085 21 H 0.130 0.870 22 H 0.121 0.879 23 H 0.100 0.900 24 H 0.157 0.843 25 H 0.166 0.834 26 H 0.082 0.918 27 H 0.153 0.847 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.177 3.492 14.497 15.485 hybrid contribution -0.696 0.960 -2.687 2.937 sum -4.873 4.452 11.810 13.529 Atomic orbital electron populations 1.27768 1.22653 1.08066 1.07015 1.69361 0.85890 0.99336 0.92501 1.93088 1.73164 1.37361 1.82130 1.27615 1.12201 0.99802 1.15764 1.20785 0.96393 0.93312 0.97031 1.21751 0.96515 1.00991 0.91928 1.19662 0.99024 0.93827 0.92323 1.20763 0.81173 0.82932 0.88126 1.90636 1.52546 1.55751 1.46074 1.83880 1.71503 1.22208 1.33104 1.21426 1.47126 0.92815 0.83413 0.88286 1.25425 0.96247 0.94309 1.00402 1.69976 1.44404 1.01382 1.33221 0.85552 0.78376 0.79071 0.79956 1.18787 1.19949 1.19979 1.21312 0.97690 0.94781 0.97118 1.20935 0.96330 0.99282 0.91994 0.86967 0.87855 0.90026 0.84272 0.83435 0.91765 0.84732 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.98 10.70 101.05 1.08 -2.89 15 2 S 1.33 12.27 14.18 -107.50 -1.52 10.75 15 3 O -0.86 -13.53 16.89 -35.23 -0.59 -14.12 15 4 C -0.46 -6.02 5.62 -39.48 -0.22 -6.24 15 5 C -0.06 -0.71 9.73 -39.64 -0.39 -1.09 15 6 C -0.09 -1.59 9.62 -39.16 -0.38 -1.97 15 7 C -0.05 -0.96 5.87 -104.99 -0.62 -1.58 15 8 C 0.42 10.84 7.84 34.58 0.27 11.11 15 9 O -0.55 -15.38 15.59 -19.27 -0.30 -15.68 15 10 O -0.20 -5.66 8.99 -21.65 -0.19 -5.86 15 11 C -0.37 -10.82 9.65 30.95 0.30 -10.52 15 12 H 0.10 2.92 6.86 -52.49 -0.36 2.56 15 13 C 0.04 1.13 5.50 -17.51 -0.10 1.04 15 14 N -0.85 -23.92 13.67 55.49 0.76 -23.16 15 15 Si 0.95 20.66 29.55 -169.99 -5.02 15.64 15 16 H -0.26 -5.72 7.11 56.52 0.40 -5.32 15 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 18 H -0.27 -5.78 7.11 56.52 0.40 -5.37 15 19 C -0.09 -1.66 9.60 -39.16 -0.38 -2.03 15 20 C -0.07 -1.07 9.42 -39.64 -0.37 -1.44 15 21 H 0.11 0.68 8.14 -51.92 -0.42 0.26 15 22 H 0.10 0.66 8.14 -51.93 -0.42 0.23 15 23 H 0.08 0.83 8.14 -51.92 -0.42 0.41 15 24 H 0.14 1.04 8.06 -52.48 -0.42 0.62 15 25 H 0.15 2.62 7.61 -52.49 -0.40 2.22 15 26 H 0.27 6.93 8.31 -40.82 -0.34 6.59 15 27 H 0.13 2.50 7.65 -52.49 -0.40 2.10 15 28 H 0.13 2.01 7.44 -52.49 -0.39 1.61 15 LS Contribution 274.09 15.07 4.13 4.13 Total: -1.00 -37.48 274.09 -5.92 -43.40 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -2.38 Total: 0.53 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -0.80 Total: -15.62 kcal Atomic # 7 Polarization: -23.92 SS G_CDS: 0.76 Total: -23.16 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.09 Total: -35.66 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 12.27 SS G_CDS: -1.52 Total: 10.75 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -37.48 -5.92 -43.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060610960.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.815 kcal (2) G-P(sol) polarization free energy of solvation -37.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds