Wall clock time and date at job start Sun Mar 29 2020 23:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47278 * 2 1 4 4 S 1.81001 * 109.47481 * 120.00115 * 2 1 3 5 5 C 1.76205 * 99.99703 * 295.00081 * 4 2 1 6 6 N 1.32553 * 119.22322 * 359.72938 * 5 4 2 7 7 C 1.32256 * 120.72950 * 179.72311 * 6 5 4 8 8 C 1.38619 * 119.20736 * 0.53973 * 7 6 5 9 9 C 1.38618 * 118.56761 * 359.73251 * 8 7 6 10 10 N 1.32263 * 119.20554 * 359.97438 * 9 8 7 11 11 C 1.50700 * 109.46847 * 240.00220 * 2 1 3 12 12 O 1.21218 * 120.00072 * 264.99790 * 11 2 1 13 13 O 1.34309 * 120.00154 * 84.99942 * 11 2 1 14 14 C 1.34924 * 117.00044 * 179.97438 * 13 11 2 15 15 H 1.07997 * 120.00257 * 359.97438 * 14 13 11 16 16 C 1.38748 * 119.99822 * 179.72786 * 14 13 11 17 17 N 1.31442 * 120.00231 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00017 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47517 * 89.99219 * 18 16 14 20 20 H 1.48504 * 109.47269 * 209.99544 * 18 16 14 21 21 H 1.48506 * 109.47099 * 329.99450 * 18 16 14 22 22 H 1.09004 * 109.47278 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46808 * 299.99907 * 1 2 3 24 24 H 1.09000 * 109.47625 * 59.99626 * 1 2 3 25 25 H 1.08008 * 120.39858 * 180.27424 * 7 6 5 26 26 H 1.08001 * 120.71826 * 179.71028 * 8 7 6 27 27 H 1.08004 * 120.40024 * 180.02562 * 9 8 7 28 28 H 0.97009 * 119.99891 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1334 -0.8533 1.4778 5 6 1.5440 0.2423 2.7257 6 7 0.8723 1.3280 2.3691 7 6 0.4116 2.1677 3.2811 8 6 0.6485 1.9068 4.6218 9 6 1.3590 0.7655 4.9596 10 7 1.7869 -0.0363 3.9987 11 6 2.0322 -0.7104 -1.2305 12 8 2.3205 -1.8865 -1.1761 13 8 2.1605 -0.0403 -2.3874 14 6 2.6158 -0.7353 -3.4505 15 1 2.8591 -1.7824 -3.3472 16 6 2.7667 -0.1058 -4.6778 17 7 2.4656 1.1673 -4.8049 18 14 3.3965 -1.0681 -6.1498 19 1 2.2489 -1.6668 -6.8777 20 1 4.1369 -0.1555 -7.0578 21 1 4.3046 -2.1470 -5.6842 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.1388 3.0484 2.9847 26 1 0.2876 2.5785 5.3867 27 1 1.5600 0.5333 5.9950 28 1 2.5708 1.6073 -5.6631 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062599882.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:17 Heat of formation + Delta-G solvation = -25.130338 kcal Electronic energy + Delta-G solvation = -15790.165664 eV Core-core repulsion = 12933.570642 eV Total energy + Delta-G solvation = -2856.595023 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.83213 -39.10467 -35.37527 -33.99185 -32.81432 -32.17279 -31.83186 -25.79464 -24.70004 -24.60655 -23.98283 -20.36212 -18.57550 -17.82330 -17.55632 -16.54016 -16.05317 -15.25048 -15.03794 -14.78921 -14.55263 -14.29645 -13.81975 -13.64044 -12.73317 -12.61036 -12.04089 -11.66710 -11.54186 -11.18541 -10.97506 -10.78448 -10.47449 -10.42938 -10.26091 -10.10602 -9.82566 -9.33323 -9.12790 -8.62937 -7.62646 -6.46196 -4.14348 0.67663 0.98931 1.28422 2.20720 3.07810 3.17590 3.24062 3.43516 3.57776 3.89207 4.10202 4.41669 4.44937 4.58259 4.94910 4.98916 5.04671 5.33146 5.51659 5.59604 5.99847 6.11211 6.14028 6.44888 6.59071 6.81615 7.34347 7.79421 7.87917 8.59032 9.01671 9.74539 10.71172 Molecular weight = 254.05amu Principal moments of inertia in cm(-1) A = 0.051511 B = 0.004745 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.443727 B = 5899.970659 C = 6220.692122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 H 0.123 0.877 4 S 0.080 5.920 5 C 0.287 3.713 6 N -0.521 5.521 7 C 0.162 3.838 8 C -0.248 4.248 9 C 0.161 3.839 10 N -0.506 5.506 11 C 0.413 3.587 12 O -0.543 6.543 13 O -0.201 6.201 14 C -0.383 4.383 15 H 0.098 0.902 16 C 0.043 3.957 17 N -0.861 5.861 18 Si 0.946 3.054 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.265 1.265 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.170 0.830 26 H 0.146 0.854 27 H 0.170 0.830 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.708 3.607 15.732 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.204 4.204 3 H 0.141 0.859 4 S 0.317 5.683 5 C -0.088 4.088 6 N -0.239 5.239 7 C -0.007 4.007 8 C -0.275 4.275 9 C -0.009 4.009 10 N -0.223 5.223 11 C 0.257 3.743 12 O -0.440 6.440 13 O -0.108 6.108 14 C -0.459 4.459 15 H 0.116 0.884 16 C -0.161 4.161 17 N -0.498 5.498 18 Si 0.770 3.230 19 H -0.198 1.198 20 H -0.203 1.203 21 H -0.190 1.190 22 H 0.082 0.918 23 H 0.100 0.900 24 H 0.095 0.905 25 H 0.187 0.813 26 H 0.164 0.836 27 H 0.187 0.813 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.610 1.765 14.821 15.356 hybrid contribution -0.779 1.562 -0.021 1.746 sum -4.389 3.327 14.799 15.791 Atomic orbital electron populations 1.21978 0.90280 1.03128 1.04238 1.22932 1.01581 1.03862 0.92039 0.85875 1.86480 1.65338 1.24514 0.91948 1.25560 0.93757 0.94335 0.95108 1.68955 1.12489 1.04202 1.38292 1.23268 0.91939 0.96273 0.89228 1.22754 1.04696 1.01174 0.98854 1.23244 0.89485 0.89054 0.99085 1.68543 1.21966 1.32025 0.99725 1.22067 0.80698 0.86073 0.85421 1.90601 1.51025 1.16956 1.85426 1.83867 1.69424 1.41282 1.16203 1.21299 1.43688 0.95719 0.85200 0.88400 1.25370 0.96559 0.96085 0.98107 1.70001 1.44565 1.09574 1.25653 0.85640 0.79020 0.78881 0.79472 1.19790 1.20255 1.18972 0.91801 0.90047 0.90457 0.81298 0.83630 0.81332 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.94 37.16 0.33 -2.05 15 2 C -0.07 -1.46 2.65 -27.88 -0.07 -1.54 15 3 H 0.12 2.38 7.95 -51.91 -0.41 1.97 15 4 S 0.08 1.46 21.00 -107.50 -2.26 -0.80 15 5 C 0.29 4.58 7.65 -90.84 -0.69 3.89 15 6 N -0.52 -7.56 6.86 -13.44 -0.09 -7.65 15 7 C 0.16 1.70 11.30 -17.23 -0.19 1.50 15 8 C -0.25 -2.12 10.16 -39.30 -0.40 -2.52 15 9 C 0.16 1.64 11.30 -17.23 -0.19 1.45 15 10 N -0.51 -7.35 10.40 -13.44 -0.14 -7.49 15 11 C 0.41 10.42 7.03 36.01 0.25 10.67 15 12 O -0.54 -14.77 15.37 -19.06 -0.29 -15.06 15 13 O -0.20 -5.80 9.75 -20.71 -0.20 -6.00 15 14 C -0.38 -11.32 9.64 30.92 0.30 -11.02 15 15 H 0.10 2.91 6.86 -52.49 -0.36 2.55 15 16 C 0.04 1.22 5.49 -17.53 -0.10 1.12 15 17 N -0.86 -25.09 13.67 55.48 0.76 -24.33 15 18 Si 0.95 21.23 29.55 -169.99 -5.02 16.21 15 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 22 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.08 1.26 5.65 -51.93 -0.29 0.96 15 24 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 25 H 0.17 1.19 8.06 -52.48 -0.42 0.77 15 26 H 0.15 0.70 8.06 -52.49 -0.42 0.28 15 27 H 0.17 1.07 8.06 -52.48 -0.42 0.65 15 28 H 0.27 7.20 8.31 -40.82 -0.34 6.86 15 LS Contribution 271.31 15.07 4.09 4.09 Total: -1.00 -34.22 271.31 -6.25 -40.46 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -2.31 Total: -0.93 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.77 Total: 1.51 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.53 Total: -39.48 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.49 Total: -21.06 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.26 Total: -0.80 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -34.22 -6.25 -40.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062599882.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.330 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds