Wall clock time and date at job start Sun Mar 29 2020 23:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47278 * 2 1 4 4 S 1.81001 * 109.47481 * 120.00115 * 2 1 3 5 5 C 1.76205 * 99.99703 * 295.00081 * 4 2 1 6 6 N 1.32553 * 119.22322 * 359.72938 * 5 4 2 7 7 C 1.32256 * 120.72950 * 179.72311 * 6 5 4 8 8 C 1.38619 * 119.20736 * 0.53973 * 7 6 5 9 9 C 1.38618 * 118.56761 * 359.73251 * 8 7 6 10 10 N 1.32263 * 119.20554 * 359.97438 * 9 8 7 11 11 C 1.50700 * 109.46847 * 240.00220 * 2 1 3 12 12 O 1.21218 * 120.00072 * 264.99790 * 11 2 1 13 13 O 1.34309 * 120.00154 * 84.99942 * 11 2 1 14 14 C 1.34924 * 117.00044 * 179.97438 * 13 11 2 15 15 H 1.07997 * 120.00257 * 359.97438 * 14 13 11 16 16 C 1.38748 * 119.99822 * 179.72786 * 14 13 11 17 17 N 1.31442 * 120.00231 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00017 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47517 * 89.99219 * 18 16 14 20 20 H 1.48504 * 109.47269 * 209.99544 * 18 16 14 21 21 H 1.48506 * 109.47099 * 329.99450 * 18 16 14 22 22 H 1.09004 * 109.47278 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46808 * 299.99907 * 1 2 3 24 24 H 1.09000 * 109.47625 * 59.99626 * 1 2 3 25 25 H 1.08008 * 120.39858 * 180.27424 * 7 6 5 26 26 H 1.08001 * 120.71826 * 179.71028 * 8 7 6 27 27 H 1.08004 * 120.40024 * 180.02562 * 9 8 7 28 28 H 0.97009 * 119.99891 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1334 -0.8533 1.4778 5 6 1.5440 0.2423 2.7257 6 7 0.8723 1.3280 2.3691 7 6 0.4116 2.1677 3.2811 8 6 0.6485 1.9068 4.6218 9 6 1.3590 0.7655 4.9596 10 7 1.7869 -0.0363 3.9987 11 6 2.0322 -0.7104 -1.2305 12 8 2.3205 -1.8865 -1.1761 13 8 2.1605 -0.0403 -2.3874 14 6 2.6158 -0.7353 -3.4505 15 1 2.8591 -1.7824 -3.3472 16 6 2.7667 -0.1058 -4.6778 17 7 2.4656 1.1673 -4.8049 18 14 3.3965 -1.0681 -6.1498 19 1 2.2489 -1.6668 -6.8777 20 1 4.1369 -0.1555 -7.0578 21 1 4.3046 -2.1470 -5.6842 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.1388 3.0484 2.9847 26 1 0.2876 2.5785 5.3867 27 1 1.5600 0.5333 5.9950 28 1 2.5708 1.6073 -5.6631 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062599882.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:17 Heat of formation + Delta-G solvation = -47.748842 kcal Electronic energy + Delta-G solvation = -15791.146476 eV Core-core repulsion = 12933.570642 eV Total energy + Delta-G solvation = -2857.575835 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.77043 -41.18248 -37.47640 -35.11801 -34.44616 -34.01386 -32.87217 -27.86289 -25.78729 -25.62470 -25.47439 -22.21459 -19.99909 -19.77427 -18.62493 -18.35789 -17.07402 -16.89105 -16.53791 -16.33158 -16.10876 -15.84962 -15.11524 -14.74130 -14.36006 -14.13422 -13.71231 -13.39299 -13.10109 -13.01934 -12.42339 -12.21065 -12.09283 -11.95128 -11.84606 -11.39895 -11.19981 -11.13969 -10.74444 -10.29789 -8.94775 -8.58988 -6.39834 -0.24069 -0.06251 0.15277 0.82517 1.23874 1.34116 1.51579 1.56051 2.06746 2.54829 2.67226 2.92366 3.25069 3.58482 3.74938 3.79067 3.95575 4.23940 4.39920 4.43743 4.62552 4.73977 4.84690 5.04574 5.11628 5.39017 5.75535 5.96106 6.49075 6.84707 6.84964 7.61892 8.61161 Molecular weight = 254.05amu Principal moments of inertia in cm(-1) A = 0.051511 B = 0.004745 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.443727 B = 5899.970659 C = 6220.692122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 H 0.124 0.876 4 S 0.034 5.966 5 C 0.272 3.728 6 N -0.544 5.544 7 C 0.146 3.854 8 C -0.213 4.213 9 C 0.149 3.851 10 N -0.530 5.530 11 C 0.413 3.587 12 O -0.566 6.566 13 O -0.229 6.229 14 C -0.424 4.424 15 H 0.085 0.915 16 C -0.001 4.001 17 N -0.898 5.898 18 Si 1.020 2.980 19 H -0.258 1.258 20 H -0.258 1.258 21 H -0.264 1.264 22 H 0.060 0.940 23 H 0.105 0.895 24 H 0.071 0.929 25 H 0.205 0.795 26 H 0.196 0.804 27 H 0.209 0.791 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.514 4.887 17.299 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.189 4.189 3 H 0.142 0.858 4 S 0.271 5.729 5 C -0.104 4.104 6 N -0.262 5.262 7 C -0.021 4.021 8 C -0.238 4.238 9 C -0.019 4.019 10 N -0.248 5.248 11 C 0.259 3.741 12 O -0.464 6.464 13 O -0.137 6.137 14 C -0.499 4.499 15 H 0.103 0.897 16 C -0.202 4.202 17 N -0.534 5.534 18 Si 0.838 3.162 19 H -0.182 1.182 20 H -0.182 1.182 21 H -0.188 1.188 22 H 0.079 0.921 23 H 0.123 0.877 24 H 0.090 0.910 25 H 0.222 0.778 26 H 0.213 0.787 27 H 0.226 0.774 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.443 3.083 16.440 17.307 hybrid contribution -0.601 1.298 -0.191 1.443 sum -5.044 4.381 16.249 17.569 Atomic orbital electron populations 1.21944 0.88280 1.03214 1.05062 1.22783 1.02918 1.03005 0.90173 0.85792 1.86416 1.67326 1.26578 0.92620 1.24801 0.95945 0.94897 0.94764 1.68842 1.12885 1.04369 1.40143 1.24004 0.91752 0.96531 0.89797 1.23300 1.01250 1.00231 0.99065 1.24034 0.89008 0.89021 0.99811 1.68449 1.22858 1.33737 0.99741 1.23099 0.78965 0.86105 0.85950 1.90563 1.51637 1.18280 1.85935 1.83886 1.70410 1.42140 1.17241 1.21513 1.46205 0.95692 0.86522 0.89737 1.26590 0.95763 0.97217 1.00617 1.70077 1.45031 1.11175 1.27162 0.84599 0.78868 0.77555 0.75161 1.18242 1.18213 1.18788 0.92089 0.87698 0.90970 0.77842 0.78728 0.77446 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 8.94 71.98 0.64 -3.79 15 2 C -0.06 -2.40 2.65 29.85 0.08 -2.33 15 3 H 0.12 4.99 7.95 -2.39 -0.02 4.97 15 4 S 0.03 1.31 21.00 -56.49 -1.19 0.13 15 5 C 0.27 8.54 7.65 180.43 1.38 9.92 15 6 N -0.54 -14.92 6.86 -196.43 -1.35 -16.27 15 7 C 0.15 2.53 11.30 84.72 0.96 3.49 15 8 C -0.21 -2.58 10.16 22.45 0.23 -2.35 15 9 C 0.15 2.49 11.30 84.72 0.96 3.44 15 10 N -0.53 -14.65 10.40 -196.43 -2.04 -16.70 15 11 C 0.41 21.85 7.03 71.24 0.50 22.35 15 12 O -0.57 -32.35 15.37 20.75 0.32 -32.03 15 13 O -0.23 -13.83 9.75 14.85 0.14 -13.69 15 14 C -0.42 -26.07 9.64 67.94 0.66 -25.42 15 15 H 0.08 5.27 6.86 -2.91 -0.02 5.25 15 16 C 0.00 -0.05 5.49 84.87 0.47 0.42 15 17 N -0.90 -53.06 13.67 21.62 0.30 -52.77 15 18 Si 1.02 43.56 29.55 68.60 2.03 45.59 15 19 H -0.26 -10.37 7.11 99.48 0.71 -9.67 15 20 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 21 H -0.26 -11.09 7.11 99.48 0.71 -10.38 15 22 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 23 H 0.10 3.18 5.65 -2.39 -0.01 3.17 15 24 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 25 H 0.20 1.94 8.06 -2.91 -0.02 1.92 15 26 H 0.20 0.48 8.06 -2.91 -0.02 0.46 15 27 H 0.21 1.65 8.06 -2.91 -0.02 1.63 15 28 H 0.28 14.98 8.31 -92.70 -0.77 14.21 15 Total: -1.00 -78.47 271.31 5.27 -73.21 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 1.19 Total: 6.80 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 5.87 Total: 5.74 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -3.09 Total: -85.74 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: 0.46 Total: -45.72 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.19 Total: 0.13 kcal Total: -78.47 5.27 -73.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062599882.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.457 kcal (2) G-P(sol) polarization free energy of solvation -78.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds