Wall clock time and date at job start Mon Mar 30 2020 00:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46806 * 2 1 4 4 C 1.36793 * 120.00084 * 278.05124 * 3 2 1 5 5 H 1.07992 * 120.00269 * 179.69034 * 4 3 2 6 6 C 1.39108 * 119.99700 * 359.70053 * 4 3 2 7 7 N 1.31323 * 120.00120 * 11.50478 * 6 4 3 8 8 Si 1.86800 * 119.99807 * 191.50490 * 6 4 3 9 9 H 1.48502 * 109.47467 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46915 * 119.99983 * 8 6 4 11 11 H 1.48504 * 109.47206 * 239.99682 * 8 6 4 12 12 C 1.34775 * 120.00087 * 98.06064 * 3 2 1 13 13 O 1.21563 * 119.99836 * 186.07235 * 12 3 2 14 14 C 1.47994 * 120.00176 * 6.06669 * 12 3 2 15 15 C 1.39971 * 120.91912 * 315.42083 * 14 12 3 16 16 C 1.38036 * 119.02267 * 180.02562 * 15 14 12 17 17 N 1.31879 * 120.92918 * 0.02562 * 16 15 14 18 18 C 1.31915 * 122.04466 * 359.72392 * 17 16 15 19 19 Cl 1.73595 * 119.56709 * 180.27330 * 18 17 16 20 20 C 1.38305 * 120.86777 * 0.53942 * 18 17 16 21 21 H 1.09006 * 109.47714 * 69.00843 * 1 2 3 22 22 H 1.09003 * 109.47213 * 189.00817 * 1 2 3 23 23 H 1.09006 * 109.47490 * 309.00896 * 1 2 3 24 24 H 1.08998 * 109.47229 * 240.00080 * 2 1 3 25 25 H 1.08999 * 109.46919 * 119.99533 * 2 1 3 26 26 H 0.97001 * 119.99661 * 180.02562 * 7 6 4 27 27 H 1.07999 * 120.48494 * 0.02562 * 15 14 12 28 28 H 1.07999 * 119.53901 * 179.97438 * 16 15 14 29 29 H 1.08001 * 120.51206 * 179.75069 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.0898 2.0814 -1.1730 5 1 2.4449 3.1013 -1.1723 6 6 1.7047 1.4798 -2.3667 7 7 1.0655 0.3328 -2.3476 8 14 2.0971 2.3034 -3.9967 9 1 2.8188 3.5770 -3.7469 10 1 2.9506 1.4034 -4.8133 11 1 0.8343 2.5843 -4.7260 12 6 2.3971 1.9621 1.1556 13 8 2.6970 3.1400 1.1741 14 6 2.4480 1.1659 2.4021 15 6 1.4099 0.2894 2.7386 16 6 1.4975 -0.4337 3.9111 17 7 2.5397 -0.3072 4.7092 18 6 3.5420 0.5031 4.4285 19 17 4.8857 0.6143 5.5219 20 6 3.5338 1.2694 3.2771 21 1 -0.3635 0.3681 -0.9595 22 1 -0.3634 -1.0150 0.1609 23 1 -0.3634 0.6469 0.7986 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.7974 -0.0869 -3.1800 27 1 0.5529 0.1806 2.0904 28 1 0.7010 -1.1121 4.1790 29 1 4.3557 1.9340 3.0549 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241238.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:31 Heat of formation + Delta-G solvation = 6.349958 kcal Electronic energy + Delta-G solvation = -16576.917743 eV Core-core repulsion = 13719.644102 eV Total energy + Delta-G solvation = -2857.273641 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.70902 -39.99987 -37.70084 -37.28140 -34.36878 -33.22430 -32.23890 -31.20495 -27.61310 -25.23578 -24.56847 -23.90963 -21.52039 -19.11467 -18.60498 -17.79260 -17.40259 -16.87385 -16.30538 -15.89518 -15.64125 -15.34274 -15.15076 -14.69737 -14.24964 -13.73600 -13.18288 -12.96303 -12.82320 -12.73001 -12.59075 -12.38667 -12.18982 -12.07153 -11.86399 -11.10527 -10.95876 -10.80762 -10.39562 -10.06064 -9.81219 -8.29883 -5.94427 -0.29016 -0.13032 0.67304 1.35059 1.43611 1.55415 1.89843 2.20562 2.58017 2.82136 3.04643 3.48383 3.64206 3.81397 3.87691 4.14784 4.43303 4.51346 4.63354 4.85319 4.90298 5.05895 5.14786 5.33249 5.37481 5.57650 5.93701 6.00724 6.44022 6.57956 7.05757 7.32243 7.87271 8.53462 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.036286 B = 0.006008 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.463770 B = 4659.195872 C = 5154.453779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.102 3.898 3 N -0.423 5.423 4 C -0.339 4.339 5 H 0.078 0.922 6 C 0.005 3.995 7 N -0.859 5.859 8 Si 0.993 3.007 9 H -0.280 1.280 10 H -0.267 1.267 11 H -0.269 1.269 12 C 0.444 3.556 13 O -0.638 6.638 14 C -0.051 4.051 15 C -0.156 4.156 16 C 0.127 3.873 17 N -0.486 5.486 18 C 0.168 3.832 19 Cl -0.021 7.021 20 C -0.129 4.129 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.030 0.970 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.278 0.722 27 H 0.167 0.833 28 H 0.214 0.786 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 -6.592 7.040 9.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.019 4.019 3 N -0.138 5.138 4 C -0.467 4.467 5 H 0.096 0.904 6 C -0.198 4.198 7 N -0.498 5.498 8 Si 0.817 3.183 9 H -0.205 1.205 10 H -0.191 1.191 11 H -0.194 1.194 12 C 0.234 3.766 13 O -0.528 6.528 14 C -0.062 4.062 15 C -0.176 4.176 16 C -0.029 4.029 17 N -0.198 5.198 18 C 0.005 3.995 19 Cl 0.007 6.993 20 C -0.152 4.152 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.049 0.951 24 H 0.120 0.880 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.185 0.815 28 H 0.231 0.769 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.393 -6.680 7.702 10.203 hybrid contribution 0.396 1.189 -1.476 1.937 sum 0.003 -5.491 6.226 8.302 Atomic orbital electron populations 1.22192 0.94778 1.00943 1.01998 1.22199 0.96164 0.81468 1.02103 1.44012 1.51352 1.13094 1.05311 1.19821 1.43556 0.98787 0.84528 0.90412 1.25994 0.94768 0.97110 1.01948 1.70136 1.34078 1.16941 1.28631 0.84875 0.78461 0.78059 0.76943 1.20525 1.19150 1.19399 1.18229 0.87124 0.87234 0.83996 1.90576 1.58469 1.17653 1.86129 1.20409 0.95432 0.95739 0.94632 1.23195 0.99768 0.95320 0.99315 1.23264 0.94682 0.96773 0.88169 1.66984 1.01270 1.18212 1.33338 1.21440 0.91707 0.95751 0.90626 1.98381 1.40982 1.96895 1.63028 1.21798 0.99642 1.00290 0.93432 0.90797 0.90655 0.95080 0.87966 0.92071 0.91126 0.81543 0.76934 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 8.57 71.98 0.62 -4.60 15 2 C 0.10 4.24 4.89 86.38 0.42 4.67 15 3 N -0.42 -21.15 2.64 -638.69 -1.68 -22.84 15 4 C -0.34 -18.36 9.50 84.13 0.80 -17.56 15 5 H 0.08 4.60 7.19 -2.91 -0.02 4.58 15 6 C 0.01 0.24 5.34 84.98 0.45 0.70 15 7 N -0.86 -39.36 7.25 21.69 0.16 -39.21 15 8 Si 0.99 39.50 29.57 68.60 2.03 41.53 15 9 H -0.28 -11.73 7.11 99.48 0.71 -11.02 15 10 H -0.27 -10.08 7.11 99.48 0.71 -9.38 15 11 H -0.27 -10.23 7.11 99.48 0.71 -9.52 15 12 C 0.44 22.32 7.28 86.83 0.63 22.95 15 13 O -0.64 -37.30 16.59 -3.91 -0.06 -37.37 15 14 C -0.05 -2.01 5.14 -19.88 -0.10 -2.11 15 15 C -0.16 -4.86 7.51 22.64 0.17 -4.69 15 16 C 0.13 3.25 11.17 84.64 0.95 4.19 15 17 N -0.49 -14.40 10.31 -186.89 -1.93 -16.32 15 18 C 0.17 5.35 7.27 84.70 0.62 5.97 15 19 Cl -0.02 -0.58 29.10 -2.72 -0.08 -0.66 15 20 C -0.13 -4.71 9.58 22.67 0.22 -4.50 15 21 H 0.07 3.17 5.88 -2.38 -0.01 3.16 15 22 H 0.07 2.21 8.14 -2.39 -0.02 2.19 15 23 H 0.03 1.10 6.50 -2.38 -0.02 1.08 15 24 H 0.10 4.62 5.74 -2.39 -0.01 4.60 15 25 H 0.06 2.23 4.98 -2.39 -0.01 2.22 15 26 H 0.28 11.78 8.31 -92.71 -0.77 11.01 15 27 H 0.17 4.93 3.84 -2.91 -0.01 4.92 15 28 H 0.21 3.32 8.06 -2.91 -0.02 3.29 15 29 H 0.14 5.16 8.06 -2.91 -0.02 5.14 15 Total: -1.00 -61.98 259.72 4.40 -57.58 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.20 Total: 12.28 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 4.77 Total: 5.01 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -3.45 Total: -78.37 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.06 Total: -37.37 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -61.98 4.40 -57.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241238.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.933 kcal (2) G-P(sol) polarization free energy of solvation -61.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds