Wall clock time and date at job start Mon Mar 30 2020 00:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47174 * 2 1 4 4 C 1.36787 * 119.99868 * 264.46145 * 3 2 1 5 5 H 1.07997 * 120.00009 * 132.00699 * 4 3 2 6 6 C 1.39112 * 120.00355 * 312.00084 * 4 3 2 7 7 N 1.31326 * 119.99561 * 3.27529 * 6 4 3 8 8 Si 1.86793 * 120.00312 * 183.27488 * 6 4 3 9 9 H 1.48495 * 109.47566 * 90.00026 * 8 6 4 10 10 H 1.48503 * 109.47111 * 210.00407 * 8 6 4 11 11 H 1.48505 * 109.46790 * 329.99748 * 8 6 4 12 12 C 1.34767 * 120.00152 * 84.46880 * 3 2 1 13 13 O 1.21567 * 120.00422 * 4.81988 * 12 3 2 14 14 C 1.48013 * 120.00147 * 184.82761 * 12 3 2 15 15 C 1.39366 * 119.72326 * 174.16916 * 14 12 3 16 16 C 1.38697 * 119.02975 * 179.70016 * 15 14 12 17 17 Cl 1.73605 * 120.76345 * 180.25729 * 16 15 14 18 18 C 1.38808 * 118.47220 * 0.28052 * 16 15 14 19 19 C 1.38482 * 119.35598 * 359.97438 * 18 16 15 20 20 N 1.31560 * 120.92500 * 0.02562 * 19 18 16 21 21 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46730 * 299.99986 * 1 2 3 23 23 H 1.09000 * 109.47007 * 59.99628 * 1 2 3 24 24 H 1.08997 * 109.46730 * 240.00014 * 2 1 3 25 25 H 1.09000 * 109.47007 * 120.00372 * 2 1 3 26 26 H 0.97002 * 119.99767 * 179.97438 * 7 6 4 27 27 H 1.07992 * 120.48317 * 359.97438 * 15 14 12 28 28 H 1.08004 * 120.32362 * 179.97438 * 18 16 15 29 29 H 1.07997 * 119.53689 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3541 1.9878 -1.1791 5 1 1.9867 2.9790 -1.4002 6 6 3.1690 1.3282 -2.0935 7 7 3.5632 0.0986 -1.8540 8 14 3.7023 2.1912 -3.6619 9 1 4.9784 2.9116 -3.4211 10 1 3.8964 1.1867 -4.7382 11 1 2.6561 3.1615 -4.0732 12 6 2.1369 2.0540 1.1617 13 8 1.9229 1.4885 2.2163 14 6 2.5276 3.4816 1.1535 15 6 2.5304 4.2040 2.3453 16 6 2.9049 5.5393 2.3221 17 17 2.9309 6.4797 3.7811 18 6 3.2580 6.1065 1.1054 19 6 3.2270 5.3293 -0.0404 20 7 2.8677 4.0647 0.0099 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.1310 -0.3616 -2.4917 27 1 2.2493 3.7299 3.2740 28 1 3.5541 7.1438 1.0528 29 1 3.5007 5.7677 -0.9887 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241254.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:11 Heat of formation + Delta-G solvation = -6.288213 kcal Electronic energy + Delta-G solvation = -16580.738006 eV Core-core repulsion = 13722.916333 eV Total energy + Delta-G solvation = -2857.821673 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.49878 -39.80864 -37.72007 -36.93704 -33.66741 -33.31419 -32.54074 -31.20905 -26.89333 -25.79122 -24.46248 -23.46460 -21.28035 -19.74828 -18.02748 -17.52795 -17.12892 -16.53953 -16.31933 -15.86958 -15.74351 -14.93266 -14.72391 -14.61067 -14.35490 -13.57860 -13.45960 -13.23652 -13.13268 -12.83308 -12.57889 -12.48396 -12.09410 -11.96692 -11.72893 -10.99879 -10.87265 -10.47255 -10.20966 -10.05106 -9.26387 -8.16385 -5.99007 -0.30039 0.10933 0.85793 1.51159 1.52107 1.64624 1.96336 2.37774 2.78677 2.94462 3.17323 3.55774 3.85821 3.88339 4.03742 4.36057 4.50950 4.61051 4.63372 4.73418 4.81696 4.90965 5.06623 5.24884 5.49809 5.54280 5.77953 6.11006 6.60048 6.94752 7.21858 7.52008 7.95983 8.83941 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.007871 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.457782 B = 3556.413452 C = 4543.729812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.099 3.901 3 N -0.421 5.421 4 C -0.305 4.305 5 H 0.119 0.881 6 C -0.006 4.006 7 N -0.911 5.911 8 Si 0.991 3.009 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.253 1.253 12 C 0.489 3.511 13 O -0.631 6.631 14 C 0.098 3.902 15 C -0.129 4.129 16 C -0.005 4.005 17 Cl -0.041 7.041 18 C -0.138 4.138 19 C 0.093 3.907 20 N -0.437 5.437 21 H 0.079 0.921 22 H 0.034 0.966 23 H 0.053 0.947 24 H 0.105 0.895 25 H 0.032 0.968 26 H 0.268 0.732 27 H 0.140 0.860 28 H 0.185 0.815 29 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.564 12.424 1.409 12.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 N -0.136 5.136 4 C -0.434 4.434 5 H 0.136 0.864 6 C -0.207 4.207 7 N -0.550 5.550 8 Si 0.815 3.185 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.176 1.176 12 C 0.279 3.721 13 O -0.520 6.520 14 C -0.039 4.039 15 C -0.151 4.151 16 C -0.040 4.040 17 Cl -0.012 7.012 18 C -0.158 4.158 19 C -0.066 4.066 20 N -0.149 5.149 21 H 0.098 0.902 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.123 0.877 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.202 0.798 29 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.614 11.505 1.166 11.580 hybrid contribution 0.412 0.288 0.463 0.684 sum -0.202 11.793 1.629 11.907 Atomic orbital electron populations 1.21944 0.95508 1.02098 1.00583 1.21616 0.93765 0.84502 1.02499 1.43705 1.52411 1.11909 1.05571 1.20253 1.27618 1.02158 0.93402 0.86391 1.26440 0.95299 0.95944 1.02981 1.69822 1.34913 1.12272 1.38039 0.84958 0.79127 0.78009 0.76449 1.20007 1.21517 1.17650 1.18664 0.82431 0.86940 0.84108 1.90574 1.59197 1.70230 1.32033 1.21058 0.98923 0.94440 0.89476 1.21932 1.00220 0.93411 0.99568 1.21193 1.01370 0.91575 0.89852 1.98374 1.96838 1.71247 1.34763 1.22641 0.99308 1.03571 0.90317 1.23818 0.94058 0.88775 0.99957 1.68654 1.07722 1.11657 1.26840 0.90250 0.94673 0.92764 0.87725 0.94924 0.92178 0.84226 0.79753 0.78414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.97 10.20 71.98 0.73 -5.24 15 2 C 0.10 4.98 5.60 86.38 0.48 5.46 15 3 N -0.42 -22.29 2.51 -638.67 -1.60 -23.89 15 4 C -0.31 -15.64 7.47 84.13 0.63 -15.01 15 5 H 0.12 5.82 5.96 -2.91 -0.02 5.80 15 6 C -0.01 -0.32 5.35 84.98 0.45 0.13 15 7 N -0.91 -49.24 10.99 21.69 0.24 -49.00 15 8 Si 0.99 39.82 29.55 68.60 2.03 41.85 15 9 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 10 H -0.29 -11.61 7.11 99.48 0.71 -10.90 15 11 H -0.25 -9.43 7.11 99.48 0.71 -8.72 15 12 C 0.49 25.68 7.57 86.84 0.66 26.33 15 13 O -0.63 -35.40 15.98 -3.93 -0.06 -35.47 15 14 C 0.10 4.34 6.66 41.86 0.28 4.62 15 15 C -0.13 -4.79 9.45 22.65 0.21 -4.57 15 16 C -0.01 -0.15 6.37 22.52 0.14 -0.01 15 17 Cl -0.04 -0.97 29.02 -2.72 -0.08 -1.05 15 18 C -0.14 -3.27 9.94 22.46 0.22 -3.04 15 19 C 0.09 2.65 11.18 84.79 0.95 3.60 15 20 N -0.44 -17.55 6.36 -185.00 -1.18 -18.73 15 21 H 0.08 2.78 8.14 -2.39 -0.02 2.76 15 22 H 0.03 1.49 8.14 -2.39 -0.02 1.47 15 23 H 0.05 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.11 5.54 5.51 -2.39 -0.01 5.53 15 25 H 0.03 1.72 7.53 -2.39 -0.02 1.70 15 26 H 0.27 13.74 8.31 -92.71 -0.77 12.97 15 27 H 0.14 5.31 7.65 -2.91 -0.02 5.29 15 28 H 0.19 2.71 8.06 -2.91 -0.02 2.69 15 29 H 0.20 4.03 8.06 -2.91 -0.02 4.00 15 Total: -1.00 -64.65 271.02 5.29 -59.37 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.17 Total: 14.65 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 4.77 Total: 12.28 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -2.54 Total: -91.62 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.06 Total: -35.47 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -64.65 5.29 -59.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241254.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.078 kcal (2) G-P(sol) polarization free energy of solvation -64.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds