Wall clock time and date at job start Mon Mar 30 2020 00:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99822 * 2 1 4 4 C 1.50696 * 109.47228 * 270.00006 * 3 2 1 5 5 H 1.08005 * 120.00043 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00408 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99681 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00394 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47526 * 89.99778 * 8 6 4 10 10 H 1.48498 * 109.47289 * 210.00104 * 8 6 4 11 11 H 1.48499 * 109.47060 * 329.99816 * 8 6 4 12 12 C 1.34780 * 120.00047 * 179.97438 * 2 1 3 13 13 O 1.21521 * 120.00067 * 184.47718 * 12 2 1 14 14 C 1.48070 * 120.00071 * 4.47992 * 12 2 1 15 15 C 1.39874 * 120.93072 * 311.09551 * 14 12 2 16 16 C 1.38087 * 119.01730 * 180.34113 * 15 14 12 17 17 N 1.31846 * 120.93825 * 359.66080 * 16 15 14 18 18 C 1.31750 * 122.07501 * 0.02562 * 17 16 15 19 19 C 1.38357 * 120.87086 * 0.02562 * 18 17 16 20 20 Cl 1.73603 * 120.52072 * 179.97438 * 19 18 17 21 21 H 1.09004 * 109.47236 * 273.02443 * 1 2 3 22 22 H 1.08992 * 109.47224 * 33.02176 * 1 2 3 23 23 H 1.09003 * 109.47256 * 153.02821 * 1 2 3 24 24 H 1.08998 * 109.47232 * 30.00390 * 3 2 1 25 25 H 1.09002 * 109.46987 * 150.00038 * 3 2 1 26 26 H 0.97002 * 120.00224 * 180.02562 * 7 6 4 27 27 H 1.08003 * 120.49100 * 0.02937 * 15 14 12 28 28 H 1.07997 * 119.53006 * 179.68414 * 16 15 14 29 29 H 1.07995 * 119.56655 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5550 3.6171 -0.6731 8 14 3.4375 3.4171 -3.4339 9 1 2.3077 4.2606 -3.8999 10 1 4.6981 4.1994 -3.4969 11 1 3.5537 2.2202 -4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3513 -1.1688 0.0827 14 6 1.4020 -2.4476 -0.0991 15 6 0.3010 -2.7094 0.7231 16 6 -0.3529 -3.9195 0.6017 17 7 0.0428 -4.8186 -0.2777 18 6 1.0703 -4.6117 -1.0759 19 6 1.7841 -3.4276 -1.0218 20 17 3.1370 -3.1648 -2.0774 21 1 -0.3634 0.0542 1.0263 22 1 -0.3633 0.8616 -0.5600 23 1 -0.3634 -0.9159 -0.4661 24 1 1.6084 2.0283 0.5139 25 1 3.1499 1.1384 0.5138 26 1 4.0318 4.4430 -0.8503 27 1 -0.0296 -1.9778 1.4456 28 1 -1.2008 -4.1323 1.2359 29 1 1.3598 -5.3766 -1.7811 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073845785.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:57 Heat of formation + Delta-G solvation = -19.931628 kcal Electronic energy + Delta-G solvation = -16338.575529 eV Core-core repulsion = 13480.162233 eV Total energy + Delta-G solvation = -2858.413296 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.74540 -40.06876 -37.69609 -36.71986 -34.91291 -33.64231 -32.16231 -29.83371 -27.68098 -26.18388 -24.65902 -24.14941 -20.94376 -18.74016 -18.59245 -17.98013 -17.48233 -17.12764 -16.53290 -16.00378 -15.88077 -15.21393 -15.05964 -14.48271 -14.25655 -13.91389 -13.54697 -13.21212 -13.09247 -13.04570 -12.84984 -12.58381 -12.25799 -12.24090 -11.76103 -11.31633 -10.88028 -10.65469 -10.49270 -10.05938 -9.53443 -8.25447 -6.39528 -0.39873 -0.15690 0.95423 1.34557 1.37512 1.47250 1.65142 2.15485 2.37611 2.58200 3.04829 3.32377 3.40115 3.60090 3.72938 4.09621 4.29417 4.46924 4.56918 4.64906 4.82652 4.88552 4.97683 5.19416 5.38040 5.48971 5.75808 6.01629 6.55110 6.68507 6.68713 7.15611 7.33364 8.81859 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.028019 B = 0.006747 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.073826 B = 4149.051040 C = 4683.912790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.596 5.596 3 C 0.260 3.740 4 C -0.543 4.543 5 H 0.050 0.950 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.963 3.037 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.276 1.276 12 C 0.539 3.461 13 O -0.568 6.568 14 C -0.084 4.084 15 C -0.125 4.125 16 C 0.114 3.886 17 N -0.469 5.469 18 C 0.119 3.881 19 C -0.073 4.073 20 Cl -0.054 7.054 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.033 0.967 25 H 0.004 0.996 26 H 0.268 0.732 27 H 0.175 0.825 28 H 0.214 0.786 29 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.532 -14.260 1.438 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.326 5.326 3 C 0.139 3.861 4 C -0.582 4.582 5 H 0.068 0.932 6 C -0.187 4.187 7 N -0.565 5.565 8 Si 0.788 3.212 9 H -0.187 1.187 10 H -0.205 1.205 11 H -0.201 1.201 12 C 0.326 3.674 13 O -0.447 6.447 14 C -0.095 4.095 15 C -0.145 4.145 16 C -0.042 4.042 17 N -0.178 5.178 18 C -0.039 4.039 19 C -0.102 4.102 20 Cl -0.026 7.026 21 H 0.105 0.895 22 H 0.088 0.912 23 H 0.102 0.898 24 H 0.051 0.949 25 H 0.022 0.978 26 H 0.077 0.923 27 H 0.192 0.808 28 H 0.231 0.769 29 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -11.155 -14.806 1.381 18.589 hybrid contribution 1.358 1.601 -0.879 2.276 sum -9.796 -13.205 0.502 16.450 Atomic orbital electron populations 1.22176 0.77708 1.03823 1.03344 1.48071 1.08572 1.05952 1.70023 1.18846 0.91378 0.79613 0.96230 1.21640 1.37072 1.06599 0.92881 0.93162 1.25781 0.94814 0.96391 1.01741 1.70035 1.38765 1.14790 1.32873 0.85480 0.78207 0.78200 0.79358 1.18656 1.20537 1.20054 1.18592 0.86955 0.84277 0.77620 1.90760 1.15346 1.87469 1.51158 1.20426 0.97315 0.94005 0.97798 1.22786 0.92494 1.00472 0.98760 1.23548 0.98959 0.87414 0.94282 1.67810 1.12445 1.32777 1.04744 1.23072 0.90091 0.93379 0.97321 1.22414 0.94023 0.97407 0.96401 1.98420 1.43640 1.96574 1.63929 0.89500 0.91160 0.89788 0.94897 0.97836 0.92308 0.80798 0.76905 0.79156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.04 9.12 127.77 1.17 3.21 15 2 N -0.60 -25.07 2.86 -854.34 -2.44 -27.51 15 3 C 0.26 13.84 5.21 85.63 0.45 14.28 15 4 C -0.54 -31.22 9.39 25.60 0.24 -30.97 15 5 H 0.05 2.90 7.81 -2.91 -0.02 2.87 15 6 C 0.01 0.70 5.46 84.65 0.46 1.16 15 7 N -0.93 -55.45 13.29 21.45 0.28 -55.17 15 8 Si 0.96 44.99 29.54 68.60 2.03 47.01 15 9 H -0.26 -11.42 7.11 99.48 0.71 -10.71 15 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 12 C 0.54 23.01 6.83 86.85 0.59 23.61 15 13 O -0.57 -29.87 15.55 -3.78 -0.06 -29.93 15 14 C -0.08 -2.64 4.92 -19.86 -0.10 -2.74 15 15 C -0.12 -2.60 7.73 22.63 0.17 -2.43 15 16 C 0.11 1.86 11.17 84.65 0.95 2.80 15 17 N -0.47 -9.67 10.33 -195.92 -2.02 -11.69 15 18 C 0.12 2.71 10.99 84.73 0.93 3.64 15 19 C -0.07 -2.19 6.37 22.71 0.14 -2.04 15 20 Cl -0.05 -1.89 27.38 -2.72 -0.07 -1.97 15 21 H 0.09 1.86 7.60 -2.39 -0.02 1.84 15 22 H 0.07 2.12 8.09 -2.39 -0.02 2.10 15 23 H 0.08 2.00 5.67 -2.39 -0.01 1.98 15 24 H 0.03 1.74 8.07 -2.39 -0.02 1.72 15 25 H 0.00 0.22 7.36 -2.39 -0.02 0.20 15 26 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 27 H 0.17 2.73 6.65 -2.91 -0.02 2.71 15 28 H 0.21 1.46 8.06 -2.91 -0.02 1.44 15 29 H 0.19 3.31 8.06 -2.91 -0.02 3.28 15 Total: -1.00 -75.14 273.14 3.89 -71.24 By element: Atomic # 1 Polarization: -3.70 SS G_CDS: 1.17 Total: -2.52 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 5.01 Total: 10.53 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -4.18 Total: -94.37 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.06 Total: -29.93 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.07 Total: -1.97 kcal Total: -75.14 3.89 -71.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073845785.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.313 kcal (2) G-P(sol) polarization free energy of solvation -75.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds