Wall clock time and date at job start Mon Mar 30 2020 00:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21516 * 120.00367 * 359.97438 * 13 12 2 15 15 C 1.48116 * 119.99617 * 179.97438 * 13 12 2 16 16 C 1.39342 * 119.70685 * 179.71968 * 15 13 12 17 17 C 1.38525 * 119.07793 * 179.79603 * 16 15 13 18 18 C 1.38771 * 118.47624 * 0.47323 * 17 16 15 19 19 Cl 1.73599 * 120.33622 * 179.76793 * 18 17 16 20 20 C 1.38717 * 119.32251 * 359.75465 * 18 17 16 21 21 N 1.31486 * 120.88120 * 0.02562 * 20 18 17 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 27 27 H 1.08000 * 120.46073 * 0.02562 * 16 15 13 28 28 H 1.08002 * 120.76353 * 180.20660 * 17 16 15 29 29 H 1.08006 * 119.55779 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8584 1.1609 2.4116 15 6 2.6403 -0.7166 3.5666 16 6 2.7765 -0.0141 4.7623 17 6 3.2349 -0.6812 5.8865 18 6 3.5513 -2.0276 5.7739 19 17 4.1356 -2.9092 7.1505 20 6 3.3956 -2.6620 4.5501 21 7 2.9541 -2.0046 3.5005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 2.2491 -1.6318 1.1527 27 1 2.5247 1.0349 4.8127 28 1 3.3477 -0.1642 6.8280 29 1 3.6411 -3.7098 4.4581 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079729426.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:34 Heat of formation + Delta-G solvation = -13.332421 kcal Electronic energy + Delta-G solvation = -15797.929171 eV Core-core repulsion = 12939.802037 eV Total energy + Delta-G solvation = -2858.127133 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.54575 -38.47592 -36.88028 -34.89804 -32.93212 -32.21483 -31.30561 -28.81086 -25.27916 -24.59732 -23.79777 -21.39233 -19.65826 -18.23855 -17.00946 -16.71550 -15.90914 -15.16900 -14.88006 -14.82589 -14.25414 -13.73375 -13.62444 -13.16932 -12.56964 -12.41109 -12.17787 -11.70497 -11.55678 -11.11541 -10.95010 -10.77074 -10.35657 -10.23662 -10.09932 -9.98283 -9.26906 -9.13745 -9.04249 -8.56413 -7.95940 -6.12534 -4.21525 0.44009 0.96287 1.70825 2.97775 3.25766 3.32310 3.35105 3.75116 3.97281 4.20668 4.36703 4.44463 4.67777 4.87583 5.19432 5.22970 5.50869 5.62966 5.82672 6.25547 6.80482 6.94557 7.11574 7.36609 7.45223 7.60578 7.70792 7.89804 8.12517 8.60922 8.74001 9.01813 9.45463 10.93586 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.040636 B = 0.004377 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.875119 B = 6395.009441 C = 6896.096440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.261 3.739 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.680 5.680 13 C 0.551 3.449 14 O -0.545 6.545 15 C 0.099 3.901 16 C -0.106 4.106 17 C -0.073 4.073 18 C -0.082 4.082 19 Cl -0.056 7.056 20 C 0.113 3.887 21 N -0.442 5.442 22 H 0.092 0.908 23 H 0.015 0.985 24 H 0.028 0.972 25 H 0.265 0.735 26 H 0.401 0.599 27 H 0.158 0.842 28 H 0.150 0.850 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.657 -6.314 16.349 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.069 0.931 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.327 5.327 13 C 0.333 3.667 14 O -0.424 6.424 15 C -0.040 4.040 16 C -0.127 4.127 17 C -0.099 4.099 18 C -0.111 4.111 19 Cl -0.028 7.028 20 C -0.047 4.047 21 N -0.153 5.153 22 H 0.111 0.889 23 H 0.034 0.966 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.235 0.765 27 H 0.176 0.824 28 H 0.168 0.832 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.294 -5.827 15.467 17.077 hybrid contribution 0.578 -0.622 0.157 0.864 sum 4.872 -6.449 15.624 17.591 Atomic orbital electron populations 1.22086 0.98126 0.99347 1.01041 1.18879 0.91264 0.94080 0.79801 0.93084 1.21211 1.32505 1.13293 0.90154 0.91878 1.24886 0.94809 0.94947 0.99071 1.69901 1.35917 1.22400 1.23925 0.86417 0.79223 0.79244 0.82054 1.20514 1.21072 1.19807 1.46490 1.62161 1.14327 1.09683 1.17789 0.79663 0.86378 0.82883 1.90755 1.52007 1.15042 1.84587 1.21862 0.96768 0.89974 0.95386 1.22199 0.96780 1.02525 0.91181 1.21545 0.96259 0.92230 0.99890 1.22319 1.03825 0.94178 0.90762 1.98382 1.86794 1.75506 1.42071 1.22843 0.95173 1.00621 0.86089 1.67805 1.08996 1.08364 1.30144 0.88922 0.96569 0.95280 0.92549 0.76515 0.82417 0.83239 0.81339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.34 15 2 C 0.26 6.72 2.56 -69.08 -0.18 6.55 15 3 H 0.05 1.49 7.58 -51.93 -0.39 1.10 15 4 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 15 5 H 0.06 1.63 7.74 -52.49 -0.41 1.23 15 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 15 7 N -0.88 -24.85 11.32 55.43 0.63 -24.22 15 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 15 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 12 N -0.68 -14.90 5.06 -55.79 -0.28 -15.18 15 13 C 0.55 11.43 7.77 -12.21 -0.09 11.33 15 14 O -0.55 -12.83 15.98 5.35 0.09 -12.74 15 15 C 0.10 1.62 6.75 -83.01 -0.56 1.06 15 16 C -0.11 -1.41 9.63 -39.07 -0.38 -1.78 15 17 C -0.07 -0.76 9.97 -39.28 -0.39 -1.15 15 18 C -0.08 -0.86 6.35 -39.21 -0.25 -1.11 15 19 Cl -0.06 -0.50 28.99 -51.86 -1.50 -2.00 15 20 C 0.11 1.33 10.98 -17.52 -0.19 1.13 15 21 N -0.44 -6.64 9.54 -9.77 -0.09 -6.73 15 22 H 0.09 2.49 6.07 -51.93 -0.32 2.18 15 23 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 24 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 26 H 0.40 8.08 7.87 -40.82 -0.32 7.76 15 27 H 0.16 2.00 7.64 -52.49 -0.40 1.60 15 28 H 0.15 1.12 8.06 -52.49 -0.42 0.70 15 29 H 0.17 1.51 8.06 -52.48 -0.42 1.08 15 LS Contribution 276.66 15.07 4.17 4.17 Total: -1.00 -29.73 276.66 -6.77 -36.51 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -2.66 Total: 4.69 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -2.09 Total: -0.22 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.25 Total: -46.13 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.73 -6.77 -36.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729426.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.174 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds