Wall clock time and date at job start Mon Mar 30 2020 00:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21516 * 120.00367 * 359.97438 * 13 12 2 15 15 C 1.48116 * 119.99617 * 179.97438 * 13 12 2 16 16 C 1.39342 * 119.70685 * 179.71968 * 15 13 12 17 17 C 1.38525 * 119.07793 * 179.79603 * 16 15 13 18 18 C 1.38771 * 118.47624 * 0.47323 * 17 16 15 19 19 Cl 1.73599 * 120.33622 * 179.76793 * 18 17 16 20 20 C 1.38717 * 119.32251 * 359.75465 * 18 17 16 21 21 N 1.31486 * 120.88120 * 0.02562 * 20 18 17 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 27 27 H 1.08000 * 120.46073 * 0.02562 * 16 15 13 28 28 H 1.08002 * 120.76353 * 180.20660 * 17 16 15 29 29 H 1.08006 * 119.55779 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8584 1.1609 2.4116 15 6 2.6403 -0.7166 3.5666 16 6 2.7765 -0.0141 4.7623 17 6 3.2349 -0.6812 5.8865 18 6 3.5513 -2.0276 5.7739 19 17 4.1356 -2.9092 7.1505 20 6 3.3956 -2.6620 4.5501 21 7 2.9541 -2.0046 3.5005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 2.2491 -1.6318 1.1527 27 1 2.5247 1.0349 4.8127 28 1 3.3477 -0.1642 6.8280 29 1 3.6411 -3.7098 4.4581 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079729426.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:33 Heat of formation + Delta-G solvation = -33.288817 kcal Electronic energy + Delta-G solvation = -15798.794545 eV Core-core repulsion = 12939.802037 eV Total energy + Delta-G solvation = -2858.992507 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.70777 -40.02516 -37.72083 -36.80909 -34.49014 -33.60009 -32.49849 -30.65600 -27.36550 -25.87662 -24.79028 -23.06483 -21.40422 -19.76042 -18.15289 -18.05382 -17.43416 -16.94820 -16.32151 -16.19989 -15.74774 -15.08918 -14.91784 -14.43585 -14.33782 -13.78031 -13.57063 -13.11316 -13.02208 -12.85260 -12.74112 -12.36175 -12.30812 -12.15608 -11.30294 -11.13813 -11.04331 -10.67558 -10.60523 -10.16476 -9.78639 -8.18776 -6.36220 -0.63810 0.03581 0.85286 1.45120 1.45921 1.56774 1.66010 2.24378 2.46937 2.68734 3.10173 3.11913 3.60009 3.69501 3.82176 3.96962 4.59817 4.66165 4.72489 4.83380 4.90318 5.05086 5.26752 5.38414 5.55396 5.64505 5.84327 6.06206 6.47765 6.69239 6.88094 7.25268 7.40857 8.87683 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.040636 B = 0.004377 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.875119 B = 6395.009441 C = 6896.096440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.267 3.733 3 H 0.006 0.994 4 C -0.549 4.549 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.266 1.266 12 N -0.683 5.683 13 C 0.549 3.451 14 O -0.583 6.583 15 C 0.069 3.931 16 C -0.103 4.103 17 C -0.059 4.059 18 C -0.069 4.069 19 Cl -0.030 7.030 20 C 0.112 3.888 21 N -0.461 5.461 22 H 0.071 0.929 23 H 0.015 0.985 24 H 0.039 0.961 25 H 0.267 0.733 26 H 0.409 0.591 27 H 0.159 0.841 28 H 0.186 0.814 29 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.787 -8.252 17.938 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.587 4.587 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.190 1.190 12 N -0.330 5.330 13 C 0.334 3.666 14 O -0.464 6.464 15 C -0.068 4.068 16 C -0.125 4.125 17 C -0.085 4.085 18 C -0.098 4.098 19 Cl -0.001 7.001 20 C -0.049 4.049 21 N -0.173 5.173 22 H 0.090 0.910 23 H 0.034 0.966 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.245 0.755 27 H 0.176 0.824 28 H 0.204 0.796 29 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.431 -7.785 17.083 19.543 hybrid contribution 0.286 -0.070 -0.143 0.327 sum 5.717 -7.856 16.940 19.528 Atomic orbital electron populations 1.21906 0.97858 0.99562 0.99940 1.18497 0.91460 0.92116 0.81475 0.97647 1.21499 1.32836 1.13608 0.90791 0.91192 1.25791 0.94825 0.95582 1.02238 1.70040 1.36824 1.23723 1.24738 0.85312 0.78926 0.78070 0.77838 1.19555 1.20933 1.19031 1.46249 1.62874 1.14602 1.09298 1.18412 0.78390 0.86080 0.83724 1.90713 1.53445 1.16779 1.85452 1.21176 1.00304 0.91027 0.94286 1.22242 0.96599 1.02620 0.90989 1.21868 0.94348 0.92176 1.00103 1.22419 1.01933 0.94316 0.91157 1.98405 1.86251 1.74936 1.40551 1.23301 0.94240 1.01621 0.85727 1.67671 1.09824 1.07827 1.31985 0.90988 0.96586 0.94217 0.92394 0.75504 0.82369 0.79640 0.78566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.94 9.26 71.98 0.67 -6.27 15 2 C 0.27 14.33 2.56 44.25 0.11 14.45 15 3 H 0.01 0.35 7.58 -2.39 -0.02 0.33 15 4 C -0.55 -29.93 8.73 25.60 0.22 -29.71 15 5 H 0.07 3.62 7.74 -2.91 -0.02 3.60 15 6 C 0.02 0.87 5.30 84.65 0.45 1.31 15 7 N -0.92 -52.67 11.32 21.45 0.24 -52.43 15 8 Si 0.97 42.54 29.54 68.60 2.03 44.56 15 9 H -0.27 -11.36 7.11 99.48 0.71 -10.66 15 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 11 H -0.27 -11.21 7.11 99.48 0.71 -10.51 15 12 N -0.68 -30.90 5.06 -448.71 -2.27 -33.17 15 13 C 0.55 23.58 7.77 86.87 0.68 24.26 15 14 O -0.58 -28.75 15.98 -3.77 -0.06 -28.81 15 15 C 0.07 2.26 6.75 41.90 0.28 2.54 15 16 C -0.10 -2.63 9.63 22.60 0.22 -2.41 15 17 C -0.06 -1.05 9.97 22.47 0.22 -0.82 15 18 C -0.07 -1.22 6.35 22.51 0.14 -1.08 15 19 Cl -0.03 -0.42 28.99 -2.72 -0.08 -0.50 15 20 C 0.11 2.33 10.98 84.86 0.93 3.27 15 21 N -0.46 -13.37 9.54 -184.82 -1.76 -15.14 15 22 H 0.07 4.02 6.07 -2.39 -0.01 4.01 15 23 H 0.02 0.77 8.14 -2.39 -0.02 0.75 15 24 H 0.04 1.90 8.14 -2.38 -0.02 1.88 15 25 H 0.27 14.46 8.31 -92.71 -0.77 13.69 15 26 H 0.41 16.82 7.87 -92.71 -0.73 16.09 15 27 H 0.16 3.95 7.64 -2.91 -0.02 3.92 15 28 H 0.19 1.94 8.06 -2.91 -0.02 1.92 15 29 H 0.20 2.84 8.06 -2.91 -0.02 2.82 15 Total: -1.00 -66.11 276.66 2.48 -63.63 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.46 Total: 16.32 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 3.93 Total: 5.53 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -3.79 Total: -100.73 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.06 Total: -28.81 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -66.11 2.48 -63.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729426.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.343 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds