Wall clock time and date at job start Mon Mar 30 2020 00:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30921 * 1 3 3 Si 1.86794 * 119.99765 * 2 1 4 4 H 1.48502 * 109.46995 * 275.41317 * 3 2 1 5 5 H 1.48507 * 109.47439 * 35.41177 * 3 2 1 6 6 H 1.48500 * 109.47169 * 155.41132 * 3 2 1 7 7 C 1.39823 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00593 * 341.74028 * 7 2 1 9 9 C 1.41145 * 119.99722 * 161.73476 * 7 2 1 10 10 C 1.40879 * 120.16983 * 150.13996 * 9 7 2 11 11 C 1.36446 * 120.05495 * 179.97438 * 10 9 7 12 12 C 1.39213 * 120.39258 * 0.02562 * 11 10 9 13 13 C 1.39973 * 120.20662 * 359.97438 * 12 11 10 14 14 C 1.37695 * 120.03398 * 0.02562 * 13 12 11 15 15 O 1.35980 * 119.96934 * 180.02562 * 13 12 11 16 16 C 1.35968 * 119.92986 * 0.02835 * 15 13 12 17 17 C 1.38538 * 120.04614 * 179.97438 * 16 15 13 18 18 C 1.38292 * 119.97224 * 179.97438 * 17 16 15 19 19 C 1.38256 * 120.14898 * 359.97438 * 18 17 16 20 20 C 1.38267 * 120.17260 * 0.02562 * 19 18 17 21 21 C 1.38592 * 119.97620 * 0.02562 * 20 19 18 22 22 O 1.35745 * 119.92642 * 179.97438 * 12 11 10 23 23 H 0.96994 * 119.99809 * 0.02562 * 1 2 3 24 24 H 1.08003 * 119.97134 * 359.95468 * 10 9 7 25 25 H 1.07999 * 119.80249 * 179.71771 * 11 10 9 26 26 H 1.07998 * 120.17255 * 179.97438 * 14 13 12 27 27 H 1.07994 * 120.01846 * 359.91377 * 17 16 15 28 28 H 1.08001 * 119.92381 * 180.02562 * 18 17 16 29 29 H 1.08009 * 119.90978 * 179.97438 * 19 18 17 30 30 H 1.07998 * 120.01407 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3762 2.1124 -1.3939 5 1 1.5024 2.6170 0.8113 6 1 3.5932 1.4099 0.5826 7 6 2.0083 -1.2109 0.0005 8 1 1.5092 -2.1226 0.2940 9 6 3.3664 -1.2418 -0.3826 10 6 4.2354 -2.2049 0.1671 11 6 5.5477 -2.2330 -0.2054 12 6 6.0378 -1.3130 -1.1281 13 6 5.1866 -0.3502 -1.6828 14 6 3.8599 -0.3100 -1.3162 15 8 5.6703 0.5458 -2.5840 16 6 6.9804 0.5046 -2.9454 17 6 7.4757 1.4159 -3.8638 18 6 8.8086 1.3729 -4.2299 19 6 9.6491 0.4223 -3.6810 20 6 9.1613 -0.4902 -2.7638 21 6 7.8263 -0.4533 -2.3933 22 8 7.3453 -1.3491 -1.4914 23 1 -0.4849 0.8400 -0.0004 24 1 3.8625 -2.9214 0.8840 25 1 6.2113 -2.9701 0.2220 26 1 3.2013 0.4322 -1.7425 27 1 6.8210 2.1590 -4.2945 28 1 9.1939 2.0840 -4.9457 29 1 10.6894 0.3920 -3.9700 30 1 9.8203 -1.2314 -2.3363 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082290874.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:23 Heat of formation + Delta-G solvation = -26.042316 kcal Electronic energy + Delta-G solvation = -17732.620602 eV Core-core repulsion = 14844.082424 eV Total energy + Delta-G solvation = -2888.538177 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.88648 -39.72467 -39.11344 -38.16898 -35.48879 -32.54193 -32.05862 -31.23313 -29.94124 -27.16304 -24.96778 -24.42846 -23.20769 -21.48053 -20.98399 -19.45440 -18.33469 -17.92875 -17.51725 -16.95351 -16.38648 -16.20107 -15.55073 -15.41387 -15.24241 -14.97387 -14.95721 -14.56118 -14.00557 -13.63343 -13.37189 -13.06452 -12.83512 -12.57924 -12.35834 -12.10881 -11.95010 -11.56041 -11.12670 -10.13881 -10.02846 -9.49939 -9.05990 -8.56284 -6.59328 -0.07294 0.18881 0.56287 0.67755 1.20166 1.28110 1.38182 1.64320 2.02042 2.09649 2.33183 2.68058 3.21925 3.25709 3.76045 4.01543 4.16502 4.29081 4.36413 4.49415 4.51186 4.54845 4.76023 4.96358 5.02619 5.03971 5.16037 5.31501 5.40575 5.42696 5.61054 5.75770 5.91478 6.02411 6.15730 6.42441 6.64244 6.81675 8.00624 Molecular weight = 254.07amu Principal moments of inertia in cm(-1) A = 0.032792 B = 0.006803 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.649121 B = 4114.895318 C = 4792.764727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.061 3.939 3 Si 0.951 3.049 4 H -0.269 1.269 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.089 3.911 10 C -0.201 4.201 11 C -0.051 4.051 12 C -0.102 4.102 13 C 0.082 3.918 14 C -0.248 4.248 15 O -0.275 6.275 16 C 0.001 3.999 17 C -0.117 4.117 18 C -0.107 4.107 19 C -0.096 4.096 20 C -0.120 4.120 21 C 0.028 3.972 22 O -0.257 6.257 23 H 0.299 0.701 24 H 0.140 0.860 25 H 0.150 0.850 26 H 0.109 0.891 27 H 0.145 0.855 28 H 0.178 0.822 29 H 0.181 0.819 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.840 3.207 -5.764 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.158 4.158 3 Si 0.775 3.225 4 H -0.195 1.195 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.487 4.487 8 H 0.101 0.899 9 C 0.086 3.914 10 C -0.220 4.220 11 C -0.070 4.070 12 C -0.144 4.144 13 C 0.039 3.961 14 C -0.268 4.268 15 O -0.187 6.187 16 C -0.042 4.042 17 C -0.135 4.135 18 C -0.125 4.125 19 C -0.114 4.114 20 C -0.138 4.138 21 C -0.016 4.016 22 O -0.170 6.170 23 H 0.110 0.890 24 H 0.158 0.842 25 H 0.168 0.832 26 H 0.127 0.873 27 H 0.163 0.837 28 H 0.195 0.805 29 H 0.198 0.802 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 15.508 3.287 -5.726 16.855 hybrid contribution -0.645 0.560 0.128 0.864 sum 14.863 3.848 -5.597 16.342 Atomic orbital electron populations 1.69713 1.08662 1.31916 1.34520 1.26626 0.95241 1.03536 0.90380 0.85696 0.79623 0.77941 0.79223 1.19489 1.18904 1.18745 1.19444 0.93486 0.96361 1.39405 0.89945 1.17663 0.93404 0.91043 0.89264 1.20921 0.91971 1.04167 1.04927 1.19963 0.95817 0.96538 0.94636 1.18820 0.82040 1.04619 1.08954 1.18978 0.93833 0.90891 0.92387 1.20259 0.92015 1.07820 1.06726 1.84100 1.24595 1.52909 1.57130 1.19763 0.82296 1.00371 1.01724 1.20744 0.97915 0.98164 0.96683 1.21431 0.90584 0.99886 1.00564 1.21486 1.02039 0.93133 0.94704 1.20755 0.90013 1.02603 1.00461 1.19714 0.95539 0.91983 0.94377 1.83904 1.23944 1.52326 1.56833 0.88974 0.84227 0.83233 0.87341 0.83685 0.80510 0.80189 0.82659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.20 13.93 21.81 0.30 -42.90 16 2 C 0.06 3.16 5.40 85.21 0.46 3.62 16 3 Si 0.95 43.68 24.51 68.60 1.68 45.36 16 4 H -0.27 -12.32 6.70 99.48 0.67 -11.65 16 5 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.26 -12.79 6.87 99.48 0.68 -12.10 16 7 C -0.46 -24.69 9.55 23.37 0.22 -24.47 16 8 H 0.08 4.57 8.06 -2.91 -0.02 4.55 16 9 C 0.09 4.58 5.10 -21.28 -0.11 4.47 16 10 C -0.20 -9.02 9.73 22.50 0.22 -8.80 16 11 C -0.05 -2.17 9.91 22.09 0.22 -1.95 16 12 C -0.10 -4.77 6.74 22.93 0.15 -4.62 16 13 C 0.08 4.11 6.70 22.56 0.15 4.26 16 14 C -0.25 -12.92 7.09 22.78 0.16 -12.76 16 15 O -0.27 -13.04 9.93 -23.70 -0.24 -13.27 16 16 C 0.00 0.04 6.70 22.57 0.15 0.20 16 17 C -0.12 -3.36 9.98 22.35 0.22 -3.14 16 18 C -0.11 -2.10 10.04 22.29 0.22 -1.87 16 19 C -0.10 -1.79 10.04 22.28 0.22 -1.57 16 20 C -0.12 -3.16 9.98 22.36 0.22 -2.94 16 21 C 0.03 1.04 6.71 22.59 0.15 1.19 16 22 O -0.26 -11.01 9.92 -20.47 -0.20 -11.21 16 23 H 0.30 14.07 8.30 -92.71 -0.77 13.30 16 24 H 0.14 5.55 8.06 -2.91 -0.02 5.52 16 25 H 0.15 5.17 8.06 -2.91 -0.02 5.15 16 26 H 0.11 5.70 4.73 -2.91 -0.01 5.69 16 27 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 28 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 29 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 30 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -65.02 262.09 5.33 -59.69 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.11 Total: 10.71 kcal Atomic # 6 Polarization: -51.05 SS G_CDS: 2.68 Total: -48.38 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.30 Total: -42.90 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.44 Total: -24.48 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.68 Total: 45.36 kcal Total: -65.02 5.33 -59.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082290874.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.649 kcal (2) G-P(sol) polarization free energy of solvation -65.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds