Wall clock time and date at job start Sun Mar 29 2020 23:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.46854 * 2 1 4 4 C 1.35655 * 117.00123 * 179.97438 * 3 2 1 5 5 C 1.38671 * 120.14307 * 0.32396 * 4 3 2 6 6 C 1.38077 * 120.09966 * 180.25670 * 5 4 3 7 7 C 1.38804 * 120.40413 * 359.43688 * 6 5 4 8 8 Cl 1.73603 * 119.85189 * 180.27967 * 7 6 5 9 9 C 1.37803 * 120.29654 * 0.26186 * 7 6 5 10 10 C 1.39839 * 119.89005 * 0.02562 * 9 7 6 11 11 C 1.47529 * 120.19776 * 180.02562 * 10 9 7 12 12 O 1.21813 * 119.99581 * 179.97438 * 11 10 9 13 13 C 1.41811 * 120.00290 * 0.02562 * 11 10 9 14 14 H 1.08003 * 120.00091 * 359.97438 * 13 11 10 15 15 C 1.40319 * 120.00133 * 180.02562 * 13 11 10 16 16 N 1.30540 * 119.99974 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 120.00192 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47207 * 89.99689 * 17 15 13 19 19 H 1.48497 * 109.47278 * 209.99918 * 17 15 13 20 20 H 1.48497 * 109.46993 * 329.99736 * 17 15 13 21 21 H 1.08993 * 109.47066 * 299.99740 * 1 2 3 22 22 H 1.08998 * 109.47223 * 59.99919 * 1 2 3 23 23 H 1.09004 * 109.46684 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46920 * 240.00540 * 2 1 3 25 25 H 1.08998 * 109.47223 * 120.00081 * 2 1 3 26 26 H 1.07994 * 119.94943 * 359.97438 * 5 4 3 27 27 H 1.08002 * 119.80024 * 179.72476 * 6 5 4 28 28 H 1.08001 * 120.05644 * 179.97438 * 9 7 6 29 29 H 0.97006 * 119.99643 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5251 0.0005 5 6 4.1987 0.4276 -0.0057 6 6 5.5674 0.6096 0.0002 7 6 6.1060 1.8889 0.0006 8 17 7.8290 2.1011 0.0008 9 6 5.2791 2.9912 0.0006 10 6 3.8911 2.8212 0.0007 11 6 2.9995 3.9966 0.0001 12 8 1.7909 3.8443 -0.0003 13 6 3.5494 5.3038 -0.0011 14 1 4.6209 5.4389 -0.0011 15 6 2.7014 6.4217 -0.0011 16 7 1.4062 6.2585 -0.0005 17 14 3.4257 8.1436 -0.0019 18 1 3.6172 8.5994 -1.4021 19 1 2.5003 9.0703 0.6982 20 1 4.7355 8.1299 0.6977 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 3.7876 -0.5711 -0.0106 27 1 6.2231 -0.2487 -0.0002 28 1 5.7023 3.9849 0.0014 29 1 0.8200 7.0314 -0.0009 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084917720.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:27 Heat of formation + Delta-G solvation = -86.491502 kcal Electronic energy + Delta-G solvation = -16227.645590 eV Core-core repulsion = 13334.053290 eV Total energy + Delta-G solvation = -2893.592300 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.050 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.16947 -38.83299 -38.22220 -36.97896 -34.73620 -32.72989 -32.32275 -30.20995 -28.75317 -25.11936 -24.43568 -22.53128 -21.61122 -19.15006 -18.55138 -17.54038 -16.98931 -16.91467 -16.44738 -15.53076 -15.13232 -14.84390 -14.78709 -14.30692 -13.78264 -13.62723 -13.54410 -13.33482 -13.10780 -12.80410 -12.74807 -12.20408 -12.15770 -12.07281 -11.99402 -11.76053 -11.39008 -10.97199 -9.93125 -9.51250 -8.99454 -8.29882 -7.03209 0.06184 0.31324 1.21583 1.38107 1.38356 1.54817 2.18340 2.22017 2.40673 2.74316 3.74203 3.78517 3.84255 4.06339 4.14505 4.20161 4.35188 4.37937 4.57001 4.79910 4.92855 4.98052 5.08806 5.16767 5.19327 5.29169 5.31264 5.70368 5.97874 6.57881 6.73100 6.84659 8.30764 8.53250 Molecular weight = 254.05amu Principal moments of inertia in cm(-1) A = 0.014068 B = 0.009227 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.803258 B = 3033.941825 C = 5003.297764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.036 3.964 3 O -0.312 6.312 4 C 0.142 3.858 5 C -0.204 4.204 6 C -0.058 4.058 7 C -0.088 4.088 8 Cl -0.066 7.066 9 C -0.049 4.049 10 C -0.177 4.177 11 C 0.368 3.632 12 O -0.569 6.569 13 C -0.549 4.549 14 H 0.090 0.910 15 C 0.026 3.974 16 N -0.788 5.788 17 Si 0.992 3.008 18 H -0.258 1.258 19 H -0.268 1.268 20 H -0.247 1.247 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.114 0.886 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.169 0.831 27 H 0.170 0.830 28 H 0.139 0.861 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.521 -10.961 0.003 13.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 O -0.225 6.225 4 C 0.095 3.905 5 C -0.222 4.222 6 C -0.076 4.076 7 C -0.115 4.115 8 Cl -0.037 7.037 9 C -0.068 4.068 10 C -0.179 4.179 11 C 0.266 3.734 12 O -0.461 6.461 13 C -0.580 4.580 14 H 0.108 0.892 15 C -0.193 4.193 16 N -0.418 5.418 17 Si 0.810 3.190 18 H -0.183 1.183 19 H -0.193 1.193 20 H -0.170 1.170 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.132 0.868 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.186 0.814 27 H 0.188 0.812 28 H 0.157 0.843 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.746 -10.875 0.007 12.798 hybrid contribution 0.186 0.806 -0.009 0.827 sum 6.932 -10.070 -0.002 12.225 Atomic orbital electron populations 1.21762 0.92349 1.03925 1.02248 1.23194 0.96866 0.81296 1.02532 1.86455 1.18628 1.30519 1.86895 1.19699 0.83518 0.93707 0.93592 1.21411 0.93323 0.98302 1.09206 1.21203 0.94554 0.95826 0.96035 1.20763 0.84739 0.94838 1.11126 1.98321 1.10343 1.97730 1.97351 1.21193 0.90741 0.99177 0.95680 1.21155 0.95101 0.94543 1.07151 1.18603 0.87843 0.88251 0.78745 1.90496 1.17357 1.88296 1.49915 1.21407 0.95748 0.92511 1.48289 0.89166 1.27192 0.94541 1.06272 0.91297 1.70117 1.05734 1.33763 1.32154 0.85105 0.79477 0.74610 0.79791 1.18279 1.19265 1.16993 0.93259 0.93264 0.86775 0.90345 0.90350 0.81350 0.81216 0.84334 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 10.28 71.98 0.74 -3.23 15 2 C 0.04 1.05 5.46 71.98 0.39 1.45 15 3 O -0.31 -14.09 8.22 -68.83 -0.57 -14.66 15 4 C 0.14 6.11 6.71 22.90 0.15 6.27 15 5 C -0.20 -6.29 9.03 22.34 0.20 -6.09 15 6 C -0.06 -1.61 9.82 22.37 0.22 -1.39 15 7 C -0.09 -2.89 6.31 22.30 0.14 -2.75 15 8 Cl -0.07 -1.82 28.94 -2.72 -0.08 -1.90 15 9 C -0.05 -2.01 9.20 22.55 0.21 -1.81 15 10 C -0.18 -8.75 5.90 -19.91 -0.12 -8.87 15 11 C 0.37 22.29 6.91 25.61 0.18 22.47 15 12 O -0.57 -38.87 13.71 16.17 0.22 -38.64 15 13 C -0.55 -31.53 8.86 23.66 0.21 -31.32 15 14 H 0.09 4.64 6.02 -2.91 -0.02 4.63 15 15 C 0.03 1.42 5.50 85.39 0.47 1.88 15 16 N -0.79 -47.68 11.73 21.88 0.26 -47.42 15 17 Si 0.99 40.29 29.56 68.60 2.03 42.32 15 18 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 19 H -0.27 -10.40 7.11 99.48 0.71 -9.70 15 20 H -0.25 -9.36 7.11 99.48 0.71 -8.66 15 21 H 0.05 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.05 1.49 8.14 -2.39 -0.02 1.47 15 23 H 0.11 2.03 8.14 -2.38 -0.02 2.02 15 24 H 0.08 1.91 7.65 -2.39 -0.02 1.89 15 25 H 0.08 1.91 7.67 -2.39 -0.02 1.89 15 26 H 0.17 3.77 6.30 -2.91 -0.02 3.75 15 27 H 0.17 3.29 8.06 -2.91 -0.02 3.27 15 28 H 0.14 5.66 6.20 -2.91 -0.02 5.64 15 29 H 0.28 15.17 8.29 -92.70 -0.77 14.40 15 Total: -1.00 -76.73 272.08 5.84 -70.89 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.18 Total: 12.79 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 2.80 Total: -23.38 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.26 Total: -47.42 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -0.34 Total: -53.30 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.08 Total: -1.90 kcal Total: -76.73 5.84 -70.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084917720.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.599 kcal (2) G-P(sol) polarization free energy of solvation -76.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds