Wall clock time and date at job start Sun Mar 29 2020 23:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46895 * 109.46903 * 2 1 4 4 C 1.46893 * 111.00388 * 294.67628 * 3 2 1 5 5 C 1.50699 * 109.47094 * 295.05719 * 4 3 2 6 6 H 1.08001 * 119.99826 * 356.28932 * 5 4 3 7 7 C 1.37879 * 120.00112 * 176.29262 * 5 4 3 8 8 N 1.31515 * 120.00190 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99898 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47160 * 90.00361 * 9 7 5 11 11 H 1.48500 * 109.47090 * 210.00170 * 9 7 5 12 12 H 1.48503 * 109.47203 * 330.00225 * 9 7 5 13 13 C 1.46906 * 110.99940 * 58.63027 * 3 2 1 14 14 C 1.53003 * 109.46978 * 56.04064 * 13 3 2 15 15 C 1.53001 * 109.47166 * 179.97438 * 14 13 3 16 16 C 1.53002 * 109.46998 * 300.00308 * 15 14 13 17 17 C 1.52999 * 109.46930 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.46891 * 59.99902 * 17 16 15 19 19 C 1.52994 * 109.47345 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47106 * 59.99843 * 16 15 14 21 21 C 1.52993 * 109.47097 * 176.04196 * 13 3 2 22 22 H 1.08995 * 109.46995 * 61.63243 * 1 2 3 23 23 H 1.09003 * 109.46895 * 181.63071 * 1 2 3 24 24 H 1.09001 * 109.47102 * 301.62774 * 1 2 3 25 25 H 1.08997 * 109.46960 * 240.00502 * 2 1 3 26 26 H 1.08997 * 109.47130 * 120.00620 * 2 1 3 27 27 H 1.08998 * 109.47511 * 55.05568 * 4 3 2 28 28 H 1.09002 * 109.47210 * 175.05960 * 4 3 2 29 29 H 0.96997 * 119.99990 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47032 * 296.04297 * 13 3 2 31 31 H 1.09002 * 109.47049 * 60.00243 * 14 13 3 32 32 H 1.08999 * 109.47590 * 300.00274 * 14 13 3 33 33 H 1.08995 * 109.47217 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.46895 * 60.00202 * 15 14 13 35 35 H 1.08994 * 109.47217 * 300.00047 * 16 15 14 36 36 H 1.09002 * 109.47238 * 300.00062 * 17 16 15 37 37 H 1.09001 * 109.47272 * 179.97438 * 18 17 16 38 38 H 1.08999 * 109.47590 * 300.00076 * 18 17 16 39 39 H 1.09004 * 109.46694 * 60.00441 * 18 17 16 40 40 H 1.09003 * 109.46929 * 60.00213 * 19 17 16 41 41 H 1.08999 * 109.47298 * 179.97438 * 19 17 16 42 42 H 1.09004 * 109.47516 * 300.00341 * 19 17 16 43 43 H 1.09002 * 109.47202 * 59.99851 * 20 16 15 44 44 H 1.09000 * 109.47115 * 179.97438 * 20 16 15 45 45 H 1.08996 * 109.47419 * 299.99543 * 21 13 3 46 46 H 1.09003 * 109.47049 * 60.00184 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6554 2.0722 -1.2461 5 6 2.3613 1.4178 -2.4056 6 1 3.0612 0.6146 -2.2279 7 6 2.1139 1.8444 -3.6931 8 7 2.7296 1.2730 -4.7050 9 14 0.9030 3.2332 -4.0003 10 1 1.6222 4.5321 -3.9733 11 1 0.2645 3.0485 -5.3283 12 1 -0.1405 3.2230 -2.9437 13 6 1.5220 2.1193 1.1710 14 6 1.9200 1.3745 2.4469 15 6 1.4022 2.1396 3.6666 16 6 2.0110 3.5432 3.6843 17 6 1.4928 4.3084 4.9036 18 6 1.8903 3.5638 6.1798 19 6 2.1020 5.7117 4.9218 20 6 1.6130 4.2878 2.4084 21 6 2.1302 3.5230 1.1891 22 1 -0.3633 0.4883 -0.9042 23 1 -0.3633 -1.0273 0.0292 24 1 -0.3633 0.5389 0.8750 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 0.5774 2.0086 -1.3944 28 1 1.9525 3.1191 -1.1839 29 1 2.5552 1.5729 -5.6108 30 1 0.4359 2.1945 1.1180 31 1 3.0061 1.2992 2.4999 32 1 1.4867 0.3744 2.4341 33 1 1.6853 1.6088 4.5755 34 1 0.3161 2.2152 3.6138 35 1 3.0971 3.4675 3.7370 36 1 0.4067 4.3841 4.8504 37 1 1.5215 4.1092 7.0485 38 1 1.4567 2.5639 6.1671 39 1 2.9764 3.4883 6.2329 40 1 1.8191 6.2424 4.0126 41 1 1.7324 6.2571 5.7902 42 1 3.1881 5.6358 4.9751 43 1 0.5269 4.3635 2.3557 44 1 2.0464 5.2879 2.4213 45 1 3.2163 3.4477 1.2421 46 1 1.8467 4.0535 0.2801 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092898981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:19 Heat of formation + Delta-G solvation = -27.886898 kcal Electronic energy + Delta-G solvation = -20166.070095 eV Core-core repulsion = 17475.360957 eV Total energy + Delta-G solvation = -2690.709138 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.48349 -37.13261 -33.93596 -32.41909 -30.99115 -29.56307 -28.68974 -27.19613 -26.13256 -23.35841 -22.58142 -21.49673 -20.40109 -19.67155 -18.56564 -16.81608 -15.70581 -15.25025 -14.63651 -14.23158 -14.16752 -13.99629 -13.77480 -13.51653 -13.05807 -12.73256 -12.40068 -12.34636 -12.29008 -12.12541 -11.72846 -11.63324 -11.34895 -11.19096 -11.16407 -10.88273 -10.82268 -10.67216 -10.50419 -10.42906 -10.26776 -9.92276 -9.88419 -9.69201 -9.38796 -9.14485 -8.51350 -7.20247 -6.01364 -3.97195 3.29754 3.37264 3.39246 4.44865 4.58736 4.73514 4.79823 4.91153 5.05494 5.23110 5.31325 5.44654 5.48333 5.54908 5.57067 5.59605 5.72774 5.76721 5.78097 5.79713 5.82148 5.87421 5.95072 5.96771 6.03651 6.06712 6.10512 6.18350 6.23313 6.30631 6.39648 6.48413 6.50851 6.55324 6.60150 6.68859 6.80821 6.90614 7.04965 7.15899 7.69216 8.02360 8.19126 8.73462 9.08245 9.61398 11.12023 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.028777 B = 0.005398 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.750809 B = 5185.860692 C = 5759.559481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 N -0.522 5.522 4 C 0.155 3.845 5 C -0.504 4.504 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.903 5.903 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.083 3.917 14 C -0.112 4.112 15 C -0.112 4.112 16 C -0.081 4.081 17 C -0.093 4.093 18 C -0.148 4.148 19 C -0.149 4.149 20 C -0.113 4.113 21 C -0.114 4.114 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.086 0.914 26 H 0.057 0.943 27 H -0.008 1.008 28 H 0.027 0.973 29 H 0.262 0.738 30 H 0.031 0.969 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.905 4.717 19.183 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.071 4.071 3 N -0.245 5.245 4 C 0.029 3.971 5 C -0.542 4.542 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.542 5.542 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.026 4.026 14 C -0.150 4.150 15 C -0.150 4.150 16 C -0.099 4.099 17 C -0.111 4.111 18 C -0.206 4.206 19 C -0.206 4.206 20 C -0.151 4.151 21 C -0.152 4.152 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.009 0.991 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.366 4.710 18.998 19.861 hybrid contribution -1.582 0.790 -0.466 1.829 sum -4.948 5.500 18.532 19.954 Atomic orbital electron populations 1.22390 0.99740 1.00949 1.01577 1.22038 0.91757 0.91318 1.01951 1.62191 1.58612 1.01603 1.02127 1.20270 0.94310 0.94841 0.87726 1.21061 1.24794 1.19540 0.88818 0.90224 1.24886 0.95878 0.96420 0.96141 1.69895 1.43104 1.42248 0.98955 0.86927 0.82259 0.83331 0.77663 1.20188 1.21296 1.19273 1.21558 0.96285 0.93556 0.91185 1.21625 1.01575 0.98396 0.93400 1.21623 1.00030 0.95375 0.97961 1.21208 1.00302 0.94630 0.93759 1.21153 1.00120 0.94986 0.94846 1.21896 1.01400 1.00348 0.96925 1.21897 1.00857 0.96418 1.01466 1.21633 1.00571 0.98609 0.94272 1.21623 1.01252 0.95032 0.97270 0.92075 0.93301 0.93604 0.89569 0.92461 0.99054 0.95563 0.92781 0.95128 0.91418 0.92091 0.92061 0.92563 0.91187 0.91560 0.93231 0.92403 0.92799 0.92314 0.93232 0.92772 0.92579 0.91958 0.91282 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 9.22 37.16 0.34 -2.96 16 2 C 0.06 1.11 5.38 -3.82 -0.02 1.09 16 3 N -0.52 -10.86 4.58 -228.09 -1.04 -11.91 16 4 C 0.15 3.75 3.43 -4.98 -0.02 3.73 16 5 C -0.50 -14.33 8.90 -34.44 -0.31 -14.64 16 6 H 0.08 2.47 7.45 -52.49 -0.39 2.08 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 9 Si 0.87 21.70 27.54 -169.99 -4.68 17.02 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.46 6.44 56.52 0.36 -6.10 16 13 C 0.08 1.41 1.39 -67.71 -0.09 1.32 16 14 C -0.11 -1.60 4.84 -26.73 -0.13 -1.73 16 15 C -0.11 -1.31 4.85 -26.73 -0.13 -1.44 16 16 C -0.08 -0.91 1.78 -90.62 -0.16 -1.07 16 17 C -0.09 -0.89 2.51 -90.62 -0.23 -1.11 16 18 C -0.15 -1.28 8.84 37.16 0.33 -0.95 16 19 C -0.15 -1.34 8.84 37.15 0.33 -1.02 16 20 C -0.11 -1.44 4.85 -26.76 -0.13 -1.57 16 21 C -0.11 -1.84 4.99 -26.76 -0.13 -1.98 16 22 H 0.06 1.22 6.51 -51.93 -0.34 0.88 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.74 6.38 -51.93 -0.33 0.41 16 25 H 0.09 1.89 6.72 -51.93 -0.35 1.54 16 26 H 0.06 0.97 6.32 -51.93 -0.33 0.65 16 27 H -0.01 -0.20 5.06 -51.93 -0.26 -0.46 16 28 H 0.03 0.64 5.49 -51.93 -0.29 0.36 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 30 H 0.03 0.55 6.47 -51.93 -0.34 0.21 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.86 6.37 -51.93 -0.33 0.53 16 33 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.06 1.16 6.22 -51.93 -0.32 0.84 16 LS Contribution 328.59 15.07 4.95 4.95 Total: -1.00 -29.49 328.59 -8.88 -38.37 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.43 Total: -0.94 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -0.45 Total: -20.44 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: -0.27 Total: -38.96 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.68 Total: 17.02 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.49 -8.88 -38.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092898981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.485 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds