Wall clock time and date at job start Sun Mar 29 2020 23:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46895 * 109.46903 * 2 1 4 4 C 1.46893 * 111.00388 * 294.67628 * 3 2 1 5 5 C 1.50699 * 109.47094 * 295.05719 * 4 3 2 6 6 H 1.08001 * 119.99826 * 356.28932 * 5 4 3 7 7 C 1.37879 * 120.00112 * 176.29262 * 5 4 3 8 8 N 1.31515 * 120.00190 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99898 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47160 * 90.00361 * 9 7 5 11 11 H 1.48500 * 109.47090 * 210.00170 * 9 7 5 12 12 H 1.48503 * 109.47203 * 330.00225 * 9 7 5 13 13 C 1.46906 * 110.99940 * 58.63027 * 3 2 1 14 14 C 1.53003 * 109.46978 * 56.04064 * 13 3 2 15 15 C 1.53001 * 109.47166 * 179.97438 * 14 13 3 16 16 C 1.53002 * 109.46998 * 300.00308 * 15 14 13 17 17 C 1.52999 * 109.46930 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.46891 * 59.99902 * 17 16 15 19 19 C 1.52994 * 109.47345 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47106 * 59.99843 * 16 15 14 21 21 C 1.52993 * 109.47097 * 176.04196 * 13 3 2 22 22 H 1.08995 * 109.46995 * 61.63243 * 1 2 3 23 23 H 1.09003 * 109.46895 * 181.63071 * 1 2 3 24 24 H 1.09001 * 109.47102 * 301.62774 * 1 2 3 25 25 H 1.08997 * 109.46960 * 240.00502 * 2 1 3 26 26 H 1.08997 * 109.47130 * 120.00620 * 2 1 3 27 27 H 1.08998 * 109.47511 * 55.05568 * 4 3 2 28 28 H 1.09002 * 109.47210 * 175.05960 * 4 3 2 29 29 H 0.96997 * 119.99990 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47032 * 296.04297 * 13 3 2 31 31 H 1.09002 * 109.47049 * 60.00243 * 14 13 3 32 32 H 1.08999 * 109.47590 * 300.00274 * 14 13 3 33 33 H 1.08995 * 109.47217 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.46895 * 60.00202 * 15 14 13 35 35 H 1.08994 * 109.47217 * 300.00047 * 16 15 14 36 36 H 1.09002 * 109.47238 * 300.00062 * 17 16 15 37 37 H 1.09001 * 109.47272 * 179.97438 * 18 17 16 38 38 H 1.08999 * 109.47590 * 300.00076 * 18 17 16 39 39 H 1.09004 * 109.46694 * 60.00441 * 18 17 16 40 40 H 1.09003 * 109.46929 * 60.00213 * 19 17 16 41 41 H 1.08999 * 109.47298 * 179.97438 * 19 17 16 42 42 H 1.09004 * 109.47516 * 300.00341 * 19 17 16 43 43 H 1.09002 * 109.47202 * 59.99851 * 20 16 15 44 44 H 1.09000 * 109.47115 * 179.97438 * 20 16 15 45 45 H 1.08996 * 109.47419 * 299.99543 * 21 13 3 46 46 H 1.09003 * 109.47049 * 60.00184 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6554 2.0722 -1.2461 5 6 2.3613 1.4178 -2.4056 6 1 3.0612 0.6146 -2.2279 7 6 2.1139 1.8444 -3.6931 8 7 2.7296 1.2730 -4.7050 9 14 0.9030 3.2332 -4.0003 10 1 1.6222 4.5321 -3.9733 11 1 0.2645 3.0485 -5.3283 12 1 -0.1405 3.2230 -2.9437 13 6 1.5220 2.1193 1.1710 14 6 1.9200 1.3745 2.4469 15 6 1.4022 2.1396 3.6666 16 6 2.0110 3.5432 3.6843 17 6 1.4928 4.3084 4.9036 18 6 1.8903 3.5638 6.1798 19 6 2.1020 5.7117 4.9218 20 6 1.6130 4.2878 2.4084 21 6 2.1302 3.5230 1.1891 22 1 -0.3633 0.4883 -0.9042 23 1 -0.3633 -1.0273 0.0292 24 1 -0.3633 0.5389 0.8750 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 0.5774 2.0086 -1.3944 28 1 1.9525 3.1191 -1.1839 29 1 2.5552 1.5729 -5.6108 30 1 0.4359 2.1945 1.1180 31 1 3.0061 1.2992 2.4999 32 1 1.4867 0.3744 2.4341 33 1 1.6853 1.6088 4.5755 34 1 0.3161 2.2152 3.6138 35 1 3.0971 3.4675 3.7370 36 1 0.4067 4.3841 4.8504 37 1 1.5215 4.1092 7.0485 38 1 1.4567 2.5639 6.1671 39 1 2.9764 3.4883 6.2329 40 1 1.8191 6.2424 4.0126 41 1 1.7324 6.2571 5.7902 42 1 3.1881 5.6358 4.9751 43 1 0.5269 4.3635 2.3557 44 1 2.0464 5.2879 2.4213 45 1 3.2163 3.4477 1.2421 46 1 1.8467 4.0535 0.2801 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092898981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:19 Heat of formation + Delta-G solvation = -44.922192 kcal Electronic energy + Delta-G solvation = -20166.808801 eV Core-core repulsion = 17475.360957 eV Total energy + Delta-G solvation = -2691.447844 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.69594 -38.40217 -35.21793 -34.40992 -32.25977 -30.95280 -30.21462 -27.92410 -27.73431 -24.92379 -23.87300 -22.79324 -21.70910 -20.55035 -20.01889 -18.93943 -17.05076 -16.52736 -16.49882 -15.74738 -15.24425 -15.03186 -14.92923 -14.79471 -14.45749 -14.20956 -13.77544 -13.73549 -13.50538 -13.12594 -13.08810 -12.97294 -12.64345 -12.53971 -12.34177 -12.21164 -12.13091 -11.90249 -11.84448 -11.78246 -11.54728 -11.42650 -11.29853 -11.21106 -10.84636 -10.75282 -10.51437 -8.86565 -8.27771 -6.29067 1.31649 1.32653 1.43109 2.33087 3.05836 3.24549 3.78177 3.81197 3.95100 4.16405 4.19102 4.26563 4.41018 4.46340 4.52666 4.55544 4.57982 4.63615 4.68189 4.70954 4.77945 4.80738 4.89677 4.93267 4.97906 5.06636 5.09047 5.11103 5.17972 5.18789 5.26335 5.29289 5.33604 5.35806 5.38595 5.42423 5.48422 5.53883 5.61377 5.63876 5.72691 6.06814 6.48966 6.74668 6.78934 7.34092 8.89144 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.028777 B = 0.005398 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.750809 B = 5185.860692 C = 5759.559481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.058 3.942 3 N -0.539 5.539 4 C 0.169 3.831 5 C -0.509 4.509 6 H 0.036 0.964 7 C 0.009 3.991 8 N -0.949 5.949 9 Si 0.940 3.060 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.254 1.254 13 C 0.083 3.917 14 C -0.106 4.106 15 C -0.105 4.105 16 C -0.077 4.077 17 C -0.088 4.088 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.105 4.105 21 C -0.114 4.114 22 H 0.033 0.967 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.084 0.916 27 H -0.011 1.011 28 H 0.027 0.973 29 H 0.266 0.734 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 5.941 21.756 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.070 4.070 3 N -0.262 5.262 4 C 0.041 3.959 5 C -0.547 4.547 6 H 0.054 0.946 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.764 3.236 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.178 1.178 13 C -0.025 4.025 14 C -0.144 4.144 15 C -0.143 4.143 16 C -0.095 4.095 17 C -0.107 4.107 18 C -0.204 4.204 19 C -0.207 4.207 20 C -0.143 4.143 21 C -0.152 4.152 22 H 0.052 0.948 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.102 0.898 27 H 0.006 0.994 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.962 5.930 21.600 22.942 hybrid contribution -0.993 0.324 -1.244 1.624 sum -5.955 6.254 20.356 22.112 Atomic orbital electron populations 1.22280 0.98026 1.02390 1.00965 1.22004 0.93180 0.90470 1.01370 1.62110 1.59646 1.02411 1.02081 1.19970 0.93267 0.94602 0.88014 1.21281 1.24132 1.18538 0.90777 0.94555 1.25781 0.97943 0.99292 0.95759 1.70048 1.45130 1.44293 0.99576 0.85815 0.79958 0.79874 0.77945 1.19002 1.20682 1.17777 1.21689 0.96119 0.93996 0.90717 1.21581 1.01159 0.98659 0.92986 1.21594 1.00215 0.95296 0.97213 1.21172 1.00034 0.94544 0.93794 1.21104 1.00168 0.95065 0.94318 1.21884 1.01411 1.00481 0.96670 1.21899 1.00795 0.96186 1.01796 1.21582 1.00668 0.98758 0.93311 1.21610 1.00555 0.94843 0.98158 0.94813 0.91051 0.91719 0.93376 0.89788 0.99356 0.95507 0.92546 0.95211 0.92267 0.91654 0.90175 0.92017 0.91726 0.91317 0.92263 0.92118 0.92897 0.92703 0.92162 0.92915 0.92176 0.90979 0.92483 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.05 9.22 71.98 0.66 -5.39 16 2 C 0.06 2.23 5.38 86.31 0.46 2.70 16 3 N -0.54 -22.59 4.58 -875.54 -4.01 -26.60 16 4 C 0.17 8.28 3.43 85.56 0.29 8.57 16 5 C -0.51 -30.09 8.90 25.60 0.23 -29.86 16 6 H 0.04 2.40 7.45 -2.91 -0.02 2.38 16 7 C 0.01 0.55 5.47 84.66 0.46 1.01 16 8 N -0.95 -60.42 13.96 21.45 0.30 -60.13 16 9 Si 0.94 45.15 27.54 68.60 1.89 47.04 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.25 -11.51 6.44 99.48 0.64 -10.87 16 13 C 0.08 2.73 1.39 44.91 0.06 2.79 16 14 C -0.11 -2.80 4.84 30.60 0.15 -2.65 16 15 C -0.11 -2.13 4.85 30.60 0.15 -1.98 16 16 C -0.08 -1.53 1.78 -10.79 -0.02 -1.55 16 17 C -0.09 -1.41 2.51 -10.80 -0.03 -1.44 16 18 C -0.15 -2.05 8.84 71.98 0.64 -1.42 16 19 C -0.15 -2.29 8.84 71.98 0.64 -1.65 16 20 C -0.11 -2.47 4.85 30.58 0.15 -2.32 16 21 C -0.11 -3.59 4.99 30.58 0.15 -3.44 16 22 H 0.03 1.32 6.51 -2.39 -0.02 1.30 16 23 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.06 1.94 6.38 -2.39 -0.02 1.93 16 25 H 0.05 2.21 6.72 -2.39 -0.02 2.19 16 26 H 0.08 2.77 6.32 -2.39 -0.02 2.75 16 27 H -0.01 -0.55 5.06 -2.39 -0.01 -0.56 16 28 H 0.03 1.32 5.49 -2.39 -0.01 1.31 16 29 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.03 1.00 6.47 -2.39 -0.02 0.99 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.66 6.37 -2.39 -0.02 1.65 16 33 H 0.08 1.37 6.43 -2.39 -0.02 1.36 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 0.81 6.43 -2.39 -0.02 0.80 16 39 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 0.88 6.43 -2.39 -0.02 0.86 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.07 1.56 6.43 -2.39 -0.02 1.54 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.04 1.55 6.22 -2.39 -0.01 1.53 16 Total: -1.00 -65.56 328.59 3.03 -62.52 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.85 Total: 13.80 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 4.00 Total: -36.64 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -3.71 Total: -86.72 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.89 Total: 47.04 kcal Total: -65.56 3.03 -62.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092898981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.600 kcal (2) G-P(sol) polarization free energy of solvation -65.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds