Wall clock time and date at job start Sun Mar 29 2020 23:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46904 * 110.99974 * 306.04809 * 12 2 1 14 14 C 1.46899 * 110.99859 * 69.99981 * 12 2 1 15 15 C 1.52996 * 109.47061 * 170.00020 * 14 12 2 16 16 C 1.53002 * 109.47097 * 295.00328 * 15 14 12 17 17 C 1.53006 * 109.47003 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47325 * 59.99718 * 17 16 15 19 19 C 1.52996 * 109.47245 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.47307 * 59.99803 * 18 17 16 21 21 C 1.53002 * 109.47310 * 300.00094 * 18 17 16 22 22 C 1.52996 * 109.47097 * 59.99749 * 21 18 17 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47009 * 60.00040 * 13 12 2 28 28 H 1.08999 * 109.47192 * 180.02562 * 13 12 2 29 29 H 1.09002 * 109.46724 * 300.00378 * 13 12 2 30 30 H 1.09006 * 109.47401 * 289.99825 * 14 12 2 31 31 H 1.09000 * 109.47534 * 50.00268 * 14 12 2 32 32 H 1.09002 * 109.47471 * 55.00056 * 15 14 12 33 33 H 1.08999 * 109.46852 * 299.99669 * 16 15 14 34 34 H 1.08993 * 109.47435 * 60.00006 * 16 15 14 35 35 H 1.08999 * 109.47014 * 299.99530 * 17 16 15 36 36 H 1.09005 * 109.46874 * 179.97438 * 17 16 15 37 37 H 1.08998 * 109.47412 * 179.97438 * 19 18 17 38 38 H 1.09005 * 109.46968 * 299.99914 * 19 18 17 39 39 H 1.08999 * 109.47000 * 59.99869 * 19 18 17 40 40 H 1.08997 * 109.47211 * 300.00454 * 20 18 17 41 41 H 1.09005 * 109.47070 * 59.99985 * 20 18 17 42 42 H 1.08998 * 109.47158 * 179.97438 * 20 18 17 43 43 H 1.08999 * 109.46852 * 300.00080 * 21 18 17 44 44 H 1.08998 * 109.47291 * 180.02562 * 21 18 17 45 45 H 1.09005 * 109.46968 * 180.02562 * 22 21 18 46 46 H 1.08999 * 109.47000 * 60.00421 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3080 14 6 1.7529 0.0974 -2.4090 15 6 2.4884 -0.5253 -3.5973 16 6 3.9984 -0.4239 -3.3724 17 6 4.7340 -1.0461 -4.5611 18 6 4.3577 -0.2985 -5.8418 19 6 5.0937 -0.9203 -7.0303 20 6 4.7558 1.1729 -5.7092 21 6 2.8477 -0.3999 -6.0667 22 6 2.1122 0.2223 -4.8781 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1611 3.4845 27 1 0.3490 -1.9547 -1.3696 28 1 1.8139 -2.5259 -2.2043 29 1 1.7058 -2.6220 -0.4304 30 1 0.6813 0.1055 -2.6088 31 1 2.1025 1.1191 -2.2603 32 1 2.2048 -1.5735 -3.6914 33 1 4.2821 0.6243 -3.2784 34 1 4.2665 -0.9562 -2.4598 35 1 4.4503 -2.0943 -4.6556 36 1 5.8098 -0.9735 -4.4011 37 1 4.8253 -0.3880 -7.9428 38 1 6.1694 -0.8476 -6.8698 39 1 4.8105 -1.9686 -7.1249 40 1 4.2319 1.6161 -4.8624 41 1 5.8316 1.2452 -5.5490 42 1 4.4882 1.7054 -6.6218 43 1 2.5641 -1.4481 -6.1612 44 1 2.5797 0.1324 -6.9793 45 1 1.0364 0.1496 -5.0381 46 1 2.3958 1.2705 -4.7836 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090780.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:03 Heat of formation + Delta-G solvation = -42.449958 kcal Electronic energy + Delta-G solvation = -20125.879983 eV Core-core repulsion = 17434.539343 eV Total energy + Delta-G solvation = -2691.340640 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.66757 -38.73046 -35.33007 -33.89294 -31.60843 -30.60832 -28.76034 -28.11884 -27.27911 -26.60369 -24.14618 -23.48355 -21.53917 -20.58464 -19.22840 -18.20036 -16.99233 -16.22509 -16.04645 -15.72387 -15.60096 -15.30171 -14.75162 -14.55546 -14.37513 -13.88470 -13.83894 -13.44841 -13.04988 -12.96145 -12.77204 -12.70246 -12.59316 -12.57927 -12.49295 -12.37243 -12.22136 -12.07563 -11.99443 -11.75341 -11.60451 -11.44184 -10.98474 -10.88429 -10.74381 -10.63357 -10.47635 -8.77143 -8.09110 -6.19883 1.43006 1.44725 1.52249 2.43983 3.19716 3.43332 3.77134 3.87791 3.94387 4.16003 4.35445 4.39190 4.53423 4.57976 4.63485 4.65369 4.69115 4.74302 4.78808 4.83667 4.88131 4.92200 4.93862 4.96185 5.04777 5.11432 5.15760 5.16644 5.19589 5.21624 5.28518 5.33394 5.36880 5.39411 5.53685 5.57962 5.59998 5.69988 5.74057 5.78283 5.82954 6.23952 6.53266 6.80075 6.94051 7.49397 8.96891 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.036539 B = 0.004640 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.119006 B = 6032.984372 C = 6278.537018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.001 0.999 4 C -0.512 4.512 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.285 1.285 10 H -0.271 1.271 11 H -0.273 1.273 12 N -0.538 5.538 13 C 0.039 3.961 14 C 0.062 3.938 15 C -0.071 4.071 16 C -0.101 4.101 17 C -0.102 4.102 18 C -0.064 4.064 19 C -0.137 4.137 20 C -0.144 4.144 21 C -0.100 4.100 22 C -0.112 4.112 23 H 0.021 0.979 24 H 0.033 0.967 25 H 0.060 0.940 26 H 0.260 0.740 27 H 0.014 0.986 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.018 0.982 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.036 -2.830 -18.213 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.019 0.981 4 C -0.550 4.550 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.210 1.210 10 H -0.196 1.196 11 H -0.199 1.199 12 N -0.261 5.261 13 C -0.109 4.109 14 C -0.066 4.066 15 C -0.089 4.089 16 C -0.139 4.139 17 C -0.140 4.140 18 C -0.064 4.064 19 C -0.194 4.194 20 C -0.201 4.201 21 C -0.138 4.138 22 C -0.150 4.150 23 H 0.040 0.960 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.033 0.967 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.479 -2.768 -18.029 19.045 hybrid contribution -0.869 0.026 1.297 1.561 sum 4.610 -2.742 -16.732 17.571 Atomic orbital electron populations 1.22188 1.00550 0.99131 0.99712 1.19049 0.89857 0.92705 0.87658 0.98108 1.21345 1.30424 1.12362 0.90914 0.92635 1.25702 0.95452 0.95829 1.01843 1.70015 1.38033 1.24269 1.23974 0.85600 0.78684 0.78682 0.78576 1.21040 1.19635 1.19866 1.62211 1.58710 1.03058 1.02170 1.22218 0.96194 0.91253 1.01238 1.22123 0.96858 0.96842 0.90796 1.21084 0.95498 0.99443 0.92915 1.21399 0.94213 1.00464 0.97813 1.21574 0.99439 0.99087 0.93875 1.20534 0.95272 0.95585 0.95023 1.21828 0.99962 1.00580 0.97063 1.21958 1.01005 0.95450 1.01694 1.21533 0.93960 1.00909 0.97355 1.21577 0.99735 0.99732 0.93975 0.96037 0.94809 0.92146 0.93049 0.96727 0.90913 0.92996 0.96339 0.93247 0.91546 0.93039 0.93191 0.92255 0.92191 0.92039 0.92602 0.92575 0.93055 0.92858 0.92119 0.91974 0.91041 0.92234 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.82 8.22 71.98 0.59 -7.23 16 2 C 0.21 11.17 2.31 44.17 0.10 11.27 16 3 H 0.00 0.06 7.93 -2.39 -0.02 0.04 16 4 C -0.51 -28.71 7.97 25.60 0.20 -28.50 16 5 H 0.06 3.11 7.10 -2.91 -0.02 3.09 16 6 C 0.01 0.55 5.30 84.66 0.45 1.00 16 7 N -0.92 -54.01 11.32 21.45 0.24 -53.77 16 8 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 N -0.54 -23.26 4.16 -901.46 -3.75 -27.01 16 13 C 0.04 1.53 8.62 127.69 1.10 2.63 16 14 C 0.06 2.27 3.92 86.30 0.34 2.60 16 15 C -0.07 -2.02 2.11 -10.79 -0.02 -2.04 16 16 C -0.10 -2.90 4.82 30.60 0.15 -2.75 16 17 C -0.10 -2.30 4.73 30.59 0.14 -2.16 16 18 C -0.06 -1.21 0.77 -52.18 -0.04 -1.25 16 19 C -0.14 -2.12 8.47 71.98 0.61 -1.51 16 20 C -0.14 -2.75 7.78 71.98 0.56 -2.19 16 21 C -0.10 -1.90 4.73 30.59 0.14 -1.76 16 22 C -0.11 -2.61 4.93 30.59 0.15 -2.45 16 23 H 0.02 0.96 6.91 -2.38 -0.02 0.94 16 24 H 0.03 1.62 6.33 -2.39 -0.02 1.61 16 25 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 26 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.01 0.56 6.21 -2.39 -0.01 0.55 16 28 H 0.07 2.39 6.21 -2.39 -0.01 2.38 16 29 H 0.05 2.19 6.86 -2.39 -0.02 2.17 16 30 H 0.02 0.68 7.06 -2.38 -0.02 0.66 16 31 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 32 H 0.07 1.90 6.26 -2.39 -0.01 1.88 16 33 H 0.05 1.53 6.43 -2.39 -0.02 1.51 16 34 H 0.05 1.70 7.75 -2.39 -0.02 1.68 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 1.13 4.81 -2.39 -0.01 1.12 16 41 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.06 1.47 6.43 -2.39 -0.02 1.46 16 Total: -1.00 -59.29 331.03 3.92 -55.38 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.91 Total: 13.33 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 4.48 Total: -34.33 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -3.50 Total: -80.78 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -59.29 3.92 -55.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090780.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.928 kcal (2) G-P(sol) polarization free energy of solvation -59.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds