Wall clock time and date at job start Sun Mar 29 2020 23:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 13 13 C 1.46898 * 110.99921 * 176.04401 * 12 2 1 14 14 C 1.46893 * 111.00255 * 299.99972 * 12 2 1 15 15 C 1.52996 * 109.47377 * 170.00136 * 14 12 2 16 16 C 1.52999 * 109.47208 * 294.99862 * 15 14 12 17 17 C 1.52996 * 109.47208 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47222 * 60.00403 * 17 16 15 19 19 C 1.53005 * 109.47099 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47502 * 59.99741 * 18 17 16 21 21 C 1.53004 * 109.46529 * 299.99620 * 18 17 16 22 22 C 1.52996 * 109.47059 * 60.00280 * 21 18 17 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.47309 * 60.00232 * 13 12 2 28 28 H 1.08998 * 109.47470 * 180.02562 * 13 12 2 29 29 H 1.09007 * 109.47247 * 300.00280 * 13 12 2 30 30 H 1.09001 * 109.46860 * 290.00089 * 14 12 2 31 31 H 1.09006 * 109.47455 * 49.99667 * 14 12 2 32 32 H 1.09000 * 109.47370 * 54.99980 * 15 14 12 33 33 H 1.09000 * 109.47051 * 300.00312 * 16 15 14 34 34 H 1.08998 * 109.47045 * 59.99469 * 16 15 14 35 35 H 1.09001 * 109.47126 * 299.99625 * 17 16 15 36 36 H 1.09008 * 109.47160 * 179.97438 * 17 16 15 37 37 H 1.08998 * 109.46931 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.47173 * 299.99811 * 19 18 17 39 39 H 1.08999 * 109.46621 * 59.99571 * 19 18 17 40 40 H 1.08997 * 109.47133 * 300.00550 * 20 18 17 41 41 H 1.08996 * 109.46954 * 60.00077 * 20 18 17 42 42 H 1.09000 * 109.47326 * 179.97438 * 20 18 17 43 43 H 1.09000 * 109.47372 * 299.99863 * 21 18 17 44 44 H 1.09000 * 109.46538 * 180.02562 * 21 18 17 45 45 H 1.08996 * 109.47007 * 179.97438 * 22 21 18 46 46 H 1.09001 * 109.47126 * 60.00073 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7946 1.1870 14 6 1.5488 -0.0265 2.4210 15 6 1.8628 -0.9044 3.6341 16 6 1.0589 -2.2031 3.5456 17 6 1.3734 -3.0813 4.7583 18 6 0.9971 -2.3349 6.0398 19 6 1.3111 -3.2134 7.2525 20 6 -0.4976 -2.0090 6.0201 21 6 1.8012 -1.0362 6.1283 22 6 1.4866 -0.1580 4.9156 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7093 1.1618 -3.4844 27 1 3.9188 0.2051 1.1591 28 1 3.8210 -1.3117 2.0857 29 1 3.8030 -1.3532 0.3065 30 1 2.0520 0.9345 2.5280 31 1 0.4723 0.1324 2.3564 32 1 2.9277 -1.1366 3.6486 33 1 -0.0060 -1.9709 3.5310 34 1 1.3271 -2.7350 2.6328 35 1 2.4383 -3.3135 4.7723 36 1 0.8002 -4.0064 4.6954 37 1 1.0434 -2.6815 8.1655 38 1 0.7380 -4.1384 7.1892 39 1 2.3759 -3.4460 7.2667 40 1 -0.7217 -1.3834 5.1561 41 1 -1.0704 -2.9342 5.9570 42 1 -0.7658 -1.4777 6.9333 43 1 2.8661 -1.2684 6.1424 44 1 1.5334 -0.5047 7.0415 45 1 2.0591 0.7673 4.9789 46 1 0.4217 0.0742 4.9016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:07 Heat of formation + Delta-G solvation = -28.040799 kcal Electronic energy + Delta-G solvation = -20154.166074 eV Core-core repulsion = 17463.450262 eV Total energy + Delta-G solvation = -2690.715812 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.58133 -36.94166 -33.73143 -32.19012 -30.57756 -29.13430 -27.80201 -27.32517 -25.39637 -24.20018 -22.60935 -22.45545 -20.17134 -19.02930 -18.27553 -16.24437 -15.41419 -14.88311 -14.71635 -14.33110 -14.07544 -13.87656 -13.83314 -13.09962 -12.80805 -12.67357 -12.27401 -12.16307 -11.81805 -11.76107 -11.73472 -11.41821 -11.12039 -11.01956 -10.96548 -10.80714 -10.72742 -10.63382 -10.33993 -10.07283 -10.04520 -9.95608 -9.76757 -9.67296 -9.43469 -8.79812 -8.37661 -7.05629 -5.97038 -4.01240 3.34251 3.38457 3.41417 4.43721 4.72408 4.74304 4.85348 5.05709 5.24182 5.34147 5.44915 5.48860 5.51347 5.61052 5.65652 5.71388 5.79084 5.79996 5.85344 6.00115 6.02540 6.06992 6.15286 6.17034 6.23656 6.29622 6.35121 6.40203 6.43542 6.48065 6.53834 6.66144 6.80900 6.87565 6.91205 6.95784 7.11216 7.22836 7.58926 7.80226 7.87595 8.28225 8.39240 8.68588 9.05549 9.63583 11.09790 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.039916 B = 0.004576 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.304622 B = 6116.876650 C = 6210.836796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.212 3.788 3 H -0.005 1.005 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.534 5.534 13 C 0.037 3.963 14 C 0.055 3.945 15 C -0.080 4.080 16 C -0.105 4.105 17 C -0.108 4.108 18 C -0.066 4.066 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.104 4.104 22 C -0.116 4.116 23 H 0.008 0.992 24 H 0.083 0.917 25 H 0.033 0.967 26 H 0.260 0.740 27 H 0.008 0.992 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.016 0.984 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 -4.510 16.745 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.106 3.894 3 H 0.013 0.987 4 C -0.540 4.540 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.258 5.258 13 C -0.111 4.111 14 C -0.074 4.074 15 C -0.099 4.099 16 C -0.142 4.142 17 C -0.145 4.145 18 C -0.066 4.066 19 C -0.198 4.198 20 C -0.201 4.201 21 C -0.142 4.142 22 C -0.154 4.154 23 H 0.026 0.974 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.026 0.974 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.145 -4.863 16.576 17.275 hybrid contribution 0.654 0.474 -0.869 1.187 sum 0.509 -4.389 15.707 16.317 Atomic orbital electron populations 1.21836 0.97842 0.99542 0.99721 1.19222 0.92243 0.91872 0.86089 0.98727 1.21135 1.30886 1.12182 0.89829 0.91977 1.24931 0.95266 0.95092 0.98976 1.69886 1.37041 1.23061 1.23405 0.86602 0.79052 0.79774 0.82206 1.20244 1.21409 1.20403 1.62093 1.08912 1.52624 1.02182 1.22220 0.89195 0.98847 1.00869 1.22161 1.00626 0.94089 0.90498 1.21157 0.99930 0.95532 0.93283 1.21475 0.99664 0.95465 0.97610 1.21624 1.00741 0.97989 0.94157 1.20541 0.95587 0.95260 0.95174 1.21871 1.01172 0.99352 0.97389 1.21964 0.95034 1.01353 1.01773 1.21549 0.99506 0.95343 0.97754 1.21615 1.01465 0.97902 0.94450 0.97353 0.89833 0.94742 0.93015 0.97375 0.93766 0.90915 0.96610 0.91006 0.91675 0.92341 0.90440 0.92488 0.92574 0.93097 0.92920 0.92944 0.91594 0.93092 0.93325 0.92351 0.92626 0.92621 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.76 37.16 0.33 -2.93 16 2 C 0.21 5.43 2.06 -68.86 -0.14 5.28 16 3 H 0.00 -0.14 8.14 -51.93 -0.42 -0.56 16 4 C -0.50 -13.85 7.93 -34.44 -0.27 -14.12 16 5 H 0.06 1.70 6.39 -52.48 -0.34 1.37 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.78 11.32 55.43 0.63 -25.15 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.53 -11.51 4.08 -236.29 -0.96 -12.48 16 13 C 0.04 0.75 9.05 60.06 0.54 1.29 16 14 C 0.05 1.01 4.16 -3.83 -0.02 0.99 16 15 C -0.08 -1.19 2.11 -90.62 -0.19 -1.38 16 16 C -0.10 -1.52 4.82 -26.73 -0.13 -1.65 16 17 C -0.11 -1.30 4.73 -26.73 -0.13 -1.43 16 18 C -0.07 -0.70 0.77 -154.50 -0.12 -0.82 16 19 C -0.14 -1.31 8.47 37.16 0.31 -0.99 16 20 C -0.14 -1.52 7.78 37.16 0.29 -1.23 16 21 C -0.10 -1.14 4.73 -26.73 -0.13 -1.27 16 22 C -0.12 -1.47 4.93 -26.73 -0.13 -1.60 16 23 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 24 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.04 0.76 6.21 -51.93 -0.32 0.44 16 29 H 0.07 1.55 6.23 -51.92 -0.32 1.23 16 30 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 31 H 0.07 1.36 5.83 -51.93 -0.30 1.06 16 32 H 0.06 1.00 6.26 -51.93 -0.33 0.67 16 33 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 34 H 0.08 1.31 7.75 -51.93 -0.40 0.91 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.76 4.81 -51.93 -0.25 0.51 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.80 6.43 -51.93 -0.33 0.46 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -27.83 332.76 -8.84 -36.67 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -8.62 Total: -2.20 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 0.12 Total: -18.33 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.34 Total: -37.63 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.83 -8.84 -36.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.625 kcal (2) G-P(sol) polarization free energy of solvation -27.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds