Wall clock time and date at job start Sun Mar 29 2020 23:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 13 13 C 1.46898 * 110.99921 * 176.04401 * 12 2 1 14 14 C 1.46893 * 111.00255 * 299.99972 * 12 2 1 15 15 C 1.52996 * 109.47377 * 170.00136 * 14 12 2 16 16 C 1.52999 * 109.47208 * 294.99862 * 15 14 12 17 17 C 1.52996 * 109.47208 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47222 * 60.00403 * 17 16 15 19 19 C 1.53005 * 109.47099 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47502 * 59.99741 * 18 17 16 21 21 C 1.53004 * 109.46529 * 299.99620 * 18 17 16 22 22 C 1.52996 * 109.47059 * 60.00280 * 21 18 17 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.47309 * 60.00232 * 13 12 2 28 28 H 1.08998 * 109.47470 * 180.02562 * 13 12 2 29 29 H 1.09007 * 109.47247 * 300.00280 * 13 12 2 30 30 H 1.09001 * 109.46860 * 290.00089 * 14 12 2 31 31 H 1.09006 * 109.47455 * 49.99667 * 14 12 2 32 32 H 1.09000 * 109.47370 * 54.99980 * 15 14 12 33 33 H 1.09000 * 109.47051 * 300.00312 * 16 15 14 34 34 H 1.08998 * 109.47045 * 59.99469 * 16 15 14 35 35 H 1.09001 * 109.47126 * 299.99625 * 17 16 15 36 36 H 1.09008 * 109.47160 * 179.97438 * 17 16 15 37 37 H 1.08998 * 109.46931 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.47173 * 299.99811 * 19 18 17 39 39 H 1.08999 * 109.46621 * 59.99571 * 19 18 17 40 40 H 1.08997 * 109.47133 * 300.00550 * 20 18 17 41 41 H 1.08996 * 109.46954 * 60.00077 * 20 18 17 42 42 H 1.09000 * 109.47326 * 179.97438 * 20 18 17 43 43 H 1.09000 * 109.47372 * 299.99863 * 21 18 17 44 44 H 1.09000 * 109.46538 * 180.02562 * 21 18 17 45 45 H 1.08996 * 109.47007 * 179.97438 * 22 21 18 46 46 H 1.09001 * 109.47126 * 60.00073 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7946 1.1870 14 6 1.5488 -0.0265 2.4210 15 6 1.8628 -0.9044 3.6341 16 6 1.0589 -2.2031 3.5456 17 6 1.3734 -3.0813 4.7583 18 6 0.9971 -2.3349 6.0398 19 6 1.3111 -3.2134 7.2525 20 6 -0.4976 -2.0090 6.0201 21 6 1.8012 -1.0362 6.1283 22 6 1.4866 -0.1580 4.9156 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7093 1.1618 -3.4844 27 1 3.9188 0.2051 1.1591 28 1 3.8210 -1.3117 2.0857 29 1 3.8030 -1.3532 0.3065 30 1 2.0520 0.9345 2.5280 31 1 0.4723 0.1324 2.3564 32 1 2.9277 -1.1366 3.6486 33 1 -0.0060 -1.9709 3.5310 34 1 1.3271 -2.7350 2.6328 35 1 2.4383 -3.3135 4.7723 36 1 0.8002 -4.0064 4.6954 37 1 1.0434 -2.6815 8.1655 38 1 0.7380 -4.1384 7.1892 39 1 2.3759 -3.4460 7.2667 40 1 -0.7217 -1.3834 5.1561 41 1 -1.0704 -2.9342 5.9570 42 1 -0.7658 -1.4777 6.9333 43 1 2.8661 -1.2684 6.1424 44 1 1.5334 -0.5047 7.0415 45 1 2.0591 0.7673 4.9789 46 1 0.4217 0.0742 4.9016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:07 Heat of formation + Delta-G solvation = -42.073901 kcal Electronic energy + Delta-G solvation = -20154.774595 eV Core-core repulsion = 17463.450262 eV Total energy + Delta-G solvation = -2691.324333 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65792 -38.57742 -35.33101 -33.84289 -31.60236 -31.05311 -29.17515 -28.11347 -27.16085 -25.90551 -24.07909 -23.52109 -21.62447 -20.68112 -19.23836 -18.35151 -17.04767 -16.21319 -15.91633 -15.68358 -15.58007 -15.40252 -14.79256 -14.63994 -14.22457 -14.00160 -13.79742 -13.45279 -13.04730 -12.94025 -12.86289 -12.69930 -12.68564 -12.61017 -12.49665 -12.22503 -12.14500 -12.01163 -11.95018 -11.74746 -11.62283 -11.44213 -10.94872 -10.85153 -10.72380 -10.65410 -10.49481 -8.86728 -8.10418 -6.22285 1.42288 1.44227 1.51747 2.42715 3.17397 3.40166 3.77065 3.87466 3.94496 4.15750 4.35542 4.39361 4.51863 4.57609 4.61497 4.63587 4.73150 4.74369 4.79846 4.86284 4.90519 4.92688 4.99884 5.03526 5.06611 5.08565 5.12279 5.16765 5.21496 5.25561 5.28916 5.32960 5.37504 5.39450 5.51570 5.58017 5.60016 5.70758 5.73974 5.79943 5.82512 6.27015 6.43354 6.79124 6.93113 7.46962 8.95563 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.039916 B = 0.004576 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.304622 B = 6116.876650 C = 6210.836796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.215 3.785 3 H -0.044 1.044 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.536 5.536 13 C 0.042 3.958 14 C 0.056 3.944 15 C -0.070 4.070 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.064 4.064 19 C -0.137 4.137 20 C -0.144 4.144 21 C -0.100 4.100 22 C -0.112 4.112 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.030 0.970 26 H 0.261 0.739 27 H 0.000 1.000 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.009 0.991 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 -5.584 18.386 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.108 3.892 3 H -0.026 1.026 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.261 5.261 13 C -0.107 4.107 14 C -0.072 4.072 15 C -0.089 4.089 16 C -0.138 4.138 17 C -0.140 4.140 18 C -0.064 4.064 19 C -0.194 4.194 20 C -0.201 4.201 21 C -0.138 4.138 22 C -0.150 4.150 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.019 0.981 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.249 -5.945 18.238 19.184 hybrid contribution 0.523 0.838 -1.351 1.674 sum 0.772 -5.107 16.887 17.659 Atomic orbital electron populations 1.21636 0.97373 0.99122 0.99483 1.19041 0.92614 0.89921 0.87608 1.02614 1.21413 1.31068 1.12255 0.90957 0.92229 1.25729 0.95386 0.95767 1.01944 1.70021 1.37874 1.24247 1.24053 0.85581 0.78700 0.78700 0.78464 1.19642 1.20981 1.19688 1.62052 1.09847 1.52189 1.01964 1.22199 0.88241 0.98509 1.01704 1.22239 0.99870 0.94487 0.90575 1.21074 0.99862 0.95258 0.92716 1.21388 0.99226 0.95403 0.97755 1.21577 1.00925 0.97790 0.93709 1.20536 0.95601 0.95258 0.95012 1.21830 1.01481 0.99259 0.96872 1.21956 0.94998 1.01406 1.01736 1.21533 0.99742 0.95159 0.97324 1.21575 1.01522 0.98072 0.93865 0.95303 0.92320 0.95035 0.92986 0.98147 0.90609 0.92456 0.97276 0.91794 0.91763 0.92832 0.93142 0.92334 0.92103 0.92057 0.92560 0.92630 0.92974 0.92805 0.92146 0.92064 0.91045 0.92396 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 8.76 71.98 0.63 -5.34 16 2 C 0.22 11.33 2.06 44.17 0.09 11.42 16 3 H -0.04 -2.58 8.14 -2.39 -0.02 -2.60 16 4 C -0.52 -29.13 7.93 25.60 0.20 -28.93 16 5 H 0.06 3.31 6.39 -2.91 -0.02 3.29 16 6 C 0.01 0.57 5.30 84.66 0.45 1.02 16 7 N -0.92 -54.15 11.32 21.45 0.24 -53.90 16 8 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 N -0.54 -23.42 4.08 -901.47 -3.68 -27.10 16 13 C 0.04 1.68 9.05 127.69 1.16 2.84 16 14 C 0.06 2.08 4.16 86.30 0.36 2.44 16 15 C -0.07 -2.01 2.11 -10.80 -0.02 -2.04 16 16 C -0.10 -2.83 4.82 30.59 0.15 -2.68 16 17 C -0.10 -2.28 4.73 30.59 0.14 -2.14 16 18 C -0.06 -1.20 0.77 -52.18 -0.04 -1.24 16 19 C -0.14 -2.11 8.47 71.98 0.61 -1.50 16 20 C -0.14 -2.70 7.78 71.98 0.56 -2.14 16 21 C -0.10 -1.91 4.73 30.59 0.14 -1.76 16 22 C -0.11 -2.62 4.93 30.59 0.15 -2.47 16 23 H 0.03 1.29 6.20 -2.39 -0.01 1.27 16 24 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 25 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 27 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.08 2.54 6.21 -2.39 -0.01 2.52 16 29 H 0.06 2.46 6.23 -2.38 -0.01 2.45 16 30 H 0.01 0.35 8.12 -2.39 -0.02 0.33 16 31 H 0.06 2.43 5.83 -2.38 -0.01 2.42 16 32 H 0.06 1.86 6.26 -2.39 -0.01 1.85 16 33 H 0.05 1.55 6.43 -2.39 -0.02 1.54 16 34 H 0.05 1.69 7.75 -2.39 -0.02 1.67 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.05 1.12 4.81 -2.39 -0.01 1.11 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.06 1.49 6.43 -2.39 -0.02 1.48 16 Total: -1.00 -59.97 332.76 4.09 -55.88 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.91 Total: 11.33 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 4.58 Total: -32.53 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -3.43 Total: -81.00 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -59.97 4.09 -55.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.809 kcal (2) G-P(sol) polarization free energy of solvation -59.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds