Wall clock time and date at job start Sun Mar 29 2020 23:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46890 * 110.99931 * 2 1 4 4 C 1.53009 * 109.47201 * 66.04449 * 3 2 1 5 5 C 1.53001 * 109.46954 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46707 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00395 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99879 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99825 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00210 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46689 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47237 * 119.99838 * 10 8 6 13 13 H 1.48504 * 109.47106 * 240.00073 * 10 8 6 14 14 C 1.46892 * 111.00165 * 236.04285 * 2 1 3 15 15 C 1.52997 * 109.47495 * 293.95663 * 14 2 1 16 16 C 1.53002 * 109.47469 * 179.97438 * 15 14 2 17 17 C 1.52997 * 109.46817 * 64.99892 * 16 15 14 18 18 C 1.52999 * 109.47317 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 18 17 21 21 C 1.53000 * 109.47233 * 184.99697 * 16 15 14 22 22 H 1.09001 * 109.46882 * 183.94955 * 1 2 3 23 23 H 1.08993 * 109.47192 * 303.95291 * 1 2 3 24 24 H 1.09001 * 109.46838 * 63.95443 * 1 2 3 25 25 H 1.08998 * 109.47234 * 186.04511 * 3 2 1 26 26 H 1.09000 * 109.47634 * 306.04391 * 3 2 1 27 27 H 1.09001 * 109.46759 * 299.99736 * 4 3 2 28 28 H 1.09000 * 109.46900 * 60.00034 * 4 3 2 29 29 H 1.08998 * 109.47608 * 300.00140 * 5 4 3 30 30 H 1.09000 * 109.47039 * 60.00426 * 5 4 3 31 31 H 0.96998 * 119.99807 * 180.02562 * 9 8 6 32 32 H 1.08997 * 109.47469 * 173.95187 * 14 2 1 33 33 H 1.09006 * 109.47354 * 53.95784 * 14 2 1 34 34 H 1.09008 * 109.47149 * 59.99815 * 15 14 2 35 35 H 1.08997 * 109.47163 * 299.99885 * 15 14 2 36 36 H 1.09002 * 109.47070 * 305.00072 * 16 15 14 37 37 H 1.08996 * 109.47853 * 300.00202 * 17 16 15 38 38 H 1.09002 * 109.47153 * 60.00231 * 17 16 15 39 39 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 40 40 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 41 41 H 1.09002 * 109.46935 * 299.99411 * 19 18 17 42 42 H 1.09001 * 109.46812 * 179.97438 * 19 18 17 43 43 H 1.08993 * 109.47194 * 179.97438 * 20 19 18 44 44 H 1.09002 * 109.46695 * 59.99734 * 20 19 18 45 45 H 1.08992 * 109.47399 * 300.00166 * 21 16 15 46 46 H 1.09004 * 109.46724 * 60.00652 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1803 3.4856 1.3185 6 6 1.8212 4.1615 2.6167 7 1 1.2582 3.6259 3.3667 8 6 2.2113 5.4637 2.8469 9 7 2.8965 6.1162 1.9333 10 14 1.7668 6.3014 4.4563 11 1 0.9987 5.3590 5.3091 12 1 3.0084 6.7085 5.1618 13 1 0.9395 7.5025 4.1772 14 6 1.9955 -0.7660 -1.1375 15 6 1.6315 -2.2426 -0.9703 16 6 2.1794 -3.0404 -2.1554 17 6 3.7086 -2.9958 -2.1368 18 6 4.2565 -3.7940 -3.3215 19 6 3.7872 -5.2467 -3.2184 20 6 2.2580 -5.2912 -3.2370 21 6 1.7102 -4.4930 -2.0528 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3633 0.5739 0.8524 24 1 -0.3633 0.4512 -0.9233 25 1 3.0797 1.3443 -0.1082 26 1 1.5612 1.9273 -0.8309 27 1 0.5471 2.0845 1.4265 28 1 2.0658 1.5015 2.1492 29 1 3.2646 3.4582 1.2105 30 1 1.7463 4.0417 0.4876 31 1 3.1713 7.0322 2.0954 32 1 3.0798 -0.6611 -1.1756 33 1 1.5612 -0.3873 -2.0628 34 1 0.5472 -2.3475 -0.9323 35 1 2.0658 -2.6214 -0.0451 36 1 1.8144 -2.6055 -3.0859 37 1 4.0429 -1.9610 -2.2098 38 1 4.0735 -3.4307 -1.2063 39 1 5.3460 -3.7627 -3.3081 40 1 3.8916 -3.3595 -4.2522 41 1 4.1521 -5.6812 -2.2877 42 1 4.1772 -5.8152 -4.0627 43 1 1.9238 -6.3261 -3.1640 44 1 1.8932 -4.8567 -4.1677 45 1 2.0751 -4.9279 -1.1224 46 1 0.6207 -4.5247 -2.0661 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102401682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:59 Heat of formation + Delta-G solvation = -64.496910 kcal Electronic energy + Delta-G solvation = -18726.472274 eV Core-core repulsion = 16034.175606 eV Total energy + Delta-G solvation = -2692.296668 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.96100 -38.60960 -35.82962 -34.25361 -32.80861 -31.61015 -29.32037 -28.56607 -26.78743 -24.61729 -23.50050 -22.61650 -21.50145 -21.24532 -20.56666 -18.48406 -16.90293 -16.68602 -16.39799 -16.10406 -15.51036 -15.37872 -15.00362 -14.87566 -14.75130 -14.27686 -14.00759 -13.64237 -13.36256 -13.13790 -12.92415 -12.80287 -12.73281 -12.65683 -12.46947 -12.43232 -12.07561 -11.94738 -11.84754 -11.58812 -11.41980 -11.37547 -11.27883 -11.12544 -10.82568 -10.69746 -10.56022 -9.25796 -8.20793 -6.31868 1.39606 1.40067 1.53841 2.40631 2.98882 3.12191 3.78683 3.81236 3.92973 4.09657 4.17712 4.22247 4.29664 4.40153 4.49836 4.55624 4.60108 4.62119 4.67052 4.69508 4.71625 4.76094 4.76798 4.85888 4.92182 5.03043 5.07063 5.10152 5.13995 5.19466 5.25764 5.26307 5.30553 5.37086 5.39403 5.46255 5.52196 5.53731 5.66931 5.73712 5.85297 6.10398 6.22267 6.28116 6.85077 7.37379 8.91510 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.049688 B = 0.002900 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.378940 B = 9653.236846 C = 9958.662287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.551 5.551 3 C 0.067 3.933 4 C -0.089 4.089 5 C 0.025 3.975 6 C -0.542 4.542 7 H 0.059 0.941 8 C -0.003 4.003 9 N -0.934 5.934 10 Si 0.967 3.033 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.054 3.946 15 C -0.101 4.101 16 C -0.080 4.080 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.111 4.111 22 H 0.085 0.915 23 H 0.061 0.939 24 H 0.022 0.978 25 H 0.065 0.935 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.051 0.949 29 H -0.009 1.009 30 H -0.011 1.011 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -23.242 -10.838 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.275 5.275 3 C -0.061 4.061 4 C -0.127 4.127 5 C -0.012 4.012 6 C -0.580 4.580 7 H 0.077 0.923 8 C -0.200 4.200 9 N -0.575 5.575 10 Si 0.791 3.209 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.202 1.202 14 C -0.073 4.073 15 C -0.139 4.139 16 C -0.099 4.099 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.149 4.149 22 H 0.104 0.896 23 H 0.080 0.920 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.010 0.990 30 H 0.008 0.992 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.468 -23.322 -10.447 25.597 hybrid contribution -0.218 1.422 -0.077 1.441 sum -1.686 -21.900 -10.523 24.356 Atomic orbital electron populations 1.22477 0.87120 1.02697 1.00349 1.62027 1.08597 1.13214 1.43660 1.22026 0.99388 0.87897 0.96805 1.21400 0.99780 0.95245 0.96268 1.18979 0.94650 0.92190 0.95406 1.21716 1.34868 0.98335 1.03031 0.92298 1.26016 0.94942 0.98295 1.00749 1.70109 1.39403 1.11778 1.36207 0.85371 0.78182 0.78317 0.79017 1.18608 1.20239 1.20249 1.22240 1.00006 0.94445 0.90624 1.21564 1.00987 0.92643 0.98702 1.21092 0.95391 0.95637 0.97791 1.21635 0.95145 0.99929 0.98750 1.21540 1.00262 0.95730 0.98183 1.21541 0.95886 0.96299 1.01929 1.21520 0.95549 1.00177 0.98326 1.21541 1.00375 0.94205 0.98768 0.89609 0.91995 0.95896 0.91657 0.95982 0.93088 0.93057 0.99020 0.99230 0.92741 0.91113 0.95311 0.91569 0.91836 0.91569 0.92588 0.92287 0.91947 0.92157 0.92182 0.91516 0.91364 0.92099 0.92131 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.13 127.69 1.17 1.75 16 2 N -0.55 -16.82 4.76 -922.47 -4.39 -21.21 16 3 C 0.07 2.45 4.96 86.31 0.43 2.88 16 4 C -0.09 -3.88 5.08 30.60 0.16 -3.73 16 5 C 0.03 1.39 4.97 29.85 0.15 1.54 16 6 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 7 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 8 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 9 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 10 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 11 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 C 0.05 1.35 4.71 86.30 0.41 1.76 16 15 C -0.10 -2.02 4.61 30.59 0.14 -1.88 16 16 C -0.08 -1.34 2.19 -10.79 -0.02 -1.36 16 17 C -0.12 -2.01 4.96 30.59 0.15 -1.85 16 18 C -0.12 -1.76 5.92 30.60 0.18 -1.58 16 19 C -0.12 -1.54 5.92 30.60 0.18 -1.36 16 20 C -0.12 -1.50 5.92 30.58 0.18 -1.32 16 21 C -0.11 -1.60 5.20 30.58 0.16 -1.44 16 22 H 0.09 1.91 6.47 -2.39 -0.02 1.90 16 23 H 0.06 1.83 6.30 -2.39 -0.02 1.81 16 24 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 26 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 27 H 0.05 2.17 6.47 -2.39 -0.02 2.15 16 28 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 29 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 30 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.07 1.79 6.36 -2.39 -0.02 1.78 16 33 H 0.03 0.71 8.12 -2.38 -0.02 0.69 16 34 H 0.07 1.26 6.55 -2.38 -0.02 1.24 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.05 6.57 -2.39 -0.02 1.04 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -63.89 348.12 2.78 -61.11 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.89 Total: 8.60 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 3.97 Total: -37.89 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -4.11 Total: -78.99 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -63.89 2.78 -61.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102401682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.384 kcal (2) G-P(sol) polarization free energy of solvation -63.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds