Wall clock time and date at job start Sun Mar 29 2020 23:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21301 * 119.99722 * 2 1 4 4 C 1.46786 * 120.00075 * 179.72215 * 2 1 3 5 5 C 1.40022 * 120.21580 * 359.72751 * 4 2 1 6 6 C 1.37784 * 119.86412 * 179.76104 * 5 4 2 7 7 Cl 1.73597 * 119.84119 * 180.24978 * 6 5 4 8 8 C 1.38725 * 120.31172 * 0.49243 * 6 5 4 9 9 C 1.38045 * 120.44112 * 359.76156 * 8 6 5 10 10 C 1.38678 * 120.13052 * 0.02562 * 9 8 6 11 11 O 1.35617 * 120.15954 * 179.97438 * 10 9 8 12 12 C 1.42894 * 117.00046 * 0.02562 * 11 10 9 13 13 C 1.50700 * 109.47421 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99608 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00349 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99919 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99984 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46957 * 90.00482 * 17 15 13 19 19 H 1.48501 * 109.46938 * 210.00011 * 17 15 13 20 20 H 1.48493 * 109.47231 * 329.99812 * 17 15 13 21 21 H 1.09004 * 109.46983 * 180.28040 * 1 2 3 22 22 H 1.09008 * 109.46880 * 300.27747 * 1 2 3 23 23 H 1.08998 * 109.47115 * 60.27541 * 1 2 3 24 24 H 1.07998 * 120.06706 * 359.97438 * 5 4 2 25 25 H 1.07997 * 119.77769 * 179.73944 * 8 6 5 26 26 H 1.08011 * 119.93376 * 179.97438 * 9 8 6 27 27 H 1.09001 * 109.47336 * 299.99874 * 12 11 10 28 28 H 1.09004 * 109.47478 * 60.00197 * 12 11 10 29 29 H 0.97001 * 119.99912 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2410 -1.2712 0.0062 5 6 1.5454 -2.4864 0.0178 6 6 2.2417 -3.6754 0.0186 7 17 1.3787 -5.1817 0.0264 8 6 3.6289 -3.6744 0.0181 9 6 4.3275 -2.4838 0.0120 10 6 3.6453 -1.2765 0.0067 11 8 4.3310 -0.1064 0.0012 12 6 5.7575 -0.1905 0.0006 13 6 6.3426 1.1983 -0.0052 14 1 5.6903 2.0590 -0.0085 15 6 7.7106 1.3700 -0.0062 16 7 8.5050 0.3219 -0.0027 17 14 8.4358 3.0916 -0.0141 18 1 8.6283 3.5539 1.3839 19 1 9.7452 3.0739 -0.7143 20 1 7.5105 4.0153 -0.7181 21 1 -0.3633 -1.0277 0.0050 22 1 -0.3633 0.5182 0.8876 23 1 -0.3633 0.5095 -0.8924 24 1 0.4655 -2.4917 0.0227 25 1 4.1659 -4.6114 0.0230 26 1 5.4076 -2.4926 0.0121 27 1 6.0906 -0.7210 0.8926 28 1 6.0894 -0.7286 -0.8874 29 1 9.4674 0.4427 -0.0039 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122159015.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:29 Heat of formation + Delta-G solvation = -63.937411 kcal Electronic energy + Delta-G solvation = -15965.157249 eV Core-core repulsion = 13072.542968 eV Total energy + Delta-G solvation = -2892.614281 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.11024 -38.16366 -37.27514 -35.95684 -32.96492 -31.97198 -29.64264 -29.26321 -27.45779 -24.02850 -23.18949 -21.37559 -19.74431 -17.70482 -16.70641 -16.25445 -15.75399 -15.12966 -14.79576 -14.63910 -14.38231 -14.32342 -13.90934 -13.07497 -13.07277 -12.31193 -12.21641 -11.98637 -11.71928 -11.40700 -11.17492 -11.01587 -10.94617 -10.92553 -10.25374 -10.13027 -9.44311 -9.21029 -9.00428 -8.63343 -7.72931 -6.28449 -4.31416 0.85071 1.46028 2.22240 2.67497 3.24010 3.28994 3.34990 3.87536 3.97380 4.27084 4.38199 4.83342 4.97399 5.09265 5.21773 5.31929 5.49513 5.55118 5.58464 5.86233 5.96724 6.09184 6.30882 6.40582 6.71752 6.77992 7.00898 7.64962 7.86998 7.95834 8.28752 8.81159 9.33820 10.82893 Molecular weight = 254.05amu Principal moments of inertia in cm(-1) A = 0.027033 B = 0.005529 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.526266 B = 5062.754790 C = 6077.832482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.387 3.613 3 O -0.429 6.429 4 C -0.218 4.218 5 C -0.030 4.030 6 C -0.107 4.107 7 Cl -0.083 7.083 8 C -0.037 4.037 9 C -0.214 4.214 10 C 0.214 3.786 11 O -0.276 6.276 12 C 0.184 3.816 13 C -0.521 4.521 14 H 0.074 0.926 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.914 3.086 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.269 1.269 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.143 0.857 25 H 0.134 0.866 26 H 0.150 0.850 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 -8.666 0.041 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.263 3.737 3 O -0.302 6.302 4 C -0.220 4.220 5 C -0.048 4.048 6 C -0.133 4.133 7 Cl -0.055 7.055 8 C -0.056 4.056 9 C -0.233 4.233 10 C 0.161 3.839 11 O -0.185 6.185 12 C 0.112 3.888 13 C -0.559 4.559 14 H 0.092 0.908 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.741 3.259 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.194 1.194 21 H 0.097 0.903 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.160 0.840 25 H 0.152 0.848 26 H 0.167 0.833 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.321 -8.042 0.037 15.560 hybrid contribution 0.645 0.193 0.011 0.673 sum -12.676 -7.849 0.048 14.910 Atomic orbital electron populations 1.22217 0.94479 1.04129 1.04604 1.22031 0.90973 0.87589 0.73067 1.90676 1.71535 1.33472 1.34527 1.19860 0.91256 0.95193 1.15719 1.21074 0.99882 0.89255 0.94631 1.20467 0.92309 0.86567 1.13975 1.98332 1.77076 1.32502 1.97561 1.21014 0.91758 0.98645 0.94207 1.21494 1.01901 0.91117 1.08781 1.19634 0.90969 0.86974 0.86279 1.86353 1.24514 1.25129 1.82493 1.20869 0.70818 0.99966 0.97146 1.20970 0.91491 0.91410 1.52061 0.90772 1.24930 0.96321 0.98313 0.94597 1.69940 1.04300 1.29525 1.49685 0.86218 0.78265 0.82963 0.78449 1.20239 1.20901 1.19385 0.90327 0.89147 0.89148 0.83976 0.84766 0.83287 0.95658 0.95644 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.11 10.19 36.01 0.37 -1.74 15 2 C 0.39 6.43 7.22 -30.85 -0.22 6.21 15 3 O -0.43 -9.25 15.91 -16.38 -0.26 -9.51 15 4 C -0.22 -3.66 5.88 -104.95 -0.62 -4.28 15 5 C -0.03 -0.39 9.21 -39.08 -0.36 -0.75 15 6 C -0.11 -1.43 6.31 -39.57 -0.25 -1.68 15 7 Cl -0.08 -0.95 28.94 -51.86 -1.50 -2.45 15 8 C -0.04 -0.53 9.81 -39.47 -0.39 -0.92 15 9 C -0.21 -3.74 9.03 -39.49 -0.36 -4.10 15 10 C 0.21 4.26 6.71 -38.59 -0.26 4.00 15 11 O -0.28 -6.76 8.19 -40.46 -0.33 -7.10 15 12 C 0.18 4.84 4.49 36.01 0.16 5.00 15 13 C -0.52 -15.05 9.43 -34.44 -0.32 -15.37 15 14 H 0.07 2.18 7.81 -52.49 -0.41 1.77 15 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 16 N -0.90 -25.71 13.29 55.43 0.74 -24.97 15 17 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 15 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 21 H 0.08 0.64 5.60 -51.93 -0.29 0.34 15 22 H 0.09 0.87 8.14 -51.92 -0.42 0.45 15 23 H 0.09 0.87 8.14 -51.93 -0.42 0.45 15 24 H 0.14 1.40 5.92 -52.49 -0.31 1.09 15 25 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15 26 H 0.15 2.69 6.30 -52.48 -0.33 2.36 15 27 H 0.03 0.68 7.66 -51.93 -0.40 0.28 15 28 H 0.03 0.68 7.66 -51.93 -0.40 0.28 15 29 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 LS Contribution 274.53 15.07 4.14 4.14 Total: -1.00 -31.23 274.53 -7.13 -38.36 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -2.54 Total: -2.96 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -2.35 Total: -12.02 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.74 Total: -24.97 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.59 Total: -16.61 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.23 -7.13 -38.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122159015.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.577 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds