Wall clock time and date at job start Sun Mar 29 2020 23:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38605 * 120.78346 * 2 1 4 4 C 1.38357 * 119.15093 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 119.63108 * 179.97438 * 4 3 2 6 6 N 1.31977 * 120.73312 * 0.02562 * 4 3 2 7 7 C 1.31879 * 121.70492 * 359.97438 * 6 4 3 8 8 C 1.50706 * 119.60537 * 179.97438 * 7 6 4 9 9 N 1.46498 * 109.46996 * 274.99844 * 8 7 6 10 10 C 1.34774 * 119.99768 * 180.02562 * 9 8 7 11 11 O 1.21696 * 120.00194 * 0.02562 * 10 9 8 12 12 C 1.46375 * 120.00195 * 180.02562 * 10 9 8 13 13 H 1.08005 * 120.00024 * 359.97438 * 12 10 9 14 14 C 1.40050 * 120.00197 * 180.02562 * 12 10 9 15 15 N 1.30667 * 119.99948 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 119.99930 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47121 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47024 * 119.99861 * 16 14 12 19 19 H 1.48503 * 109.46894 * 240.00131 * 16 14 12 20 20 C 1.38179 * 120.78354 * 0.25776 * 7 6 4 21 21 H 1.09002 * 109.47391 * 89.99622 * 1 2 3 22 22 H 1.09000 * 109.47008 * 210.00131 * 1 2 3 23 23 H 1.08999 * 109.46544 * 329.99800 * 1 2 3 24 24 H 1.07995 * 120.42524 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47292 * 35.00651 * 8 7 6 26 26 H 1.09001 * 109.46828 * 155.00248 * 8 7 6 27 27 H 0.97003 * 120.00250 * 0.02562 * 9 8 7 28 28 H 0.97000 * 119.99627 * 180.02562 * 15 14 12 29 29 H 1.07997 * 120.40632 * 179.72041 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.1908 0.0000 4 6 3.5994 1.1514 -0.0005 5 17 4.5003 2.6353 -0.0012 6 7 4.2413 -0.0018 -0.0016 7 6 3.5980 -1.1531 -0.0016 8 6 4.3787 -2.4422 -0.0034 9 7 4.7330 -2.7966 -1.3800 10 6 5.4370 -3.9190 -1.6269 11 8 5.7780 -4.6383 -0.7064 12 6 5.7916 -4.2729 -3.0023 13 1 5.4886 -3.6347 -3.8193 14 6 6.5227 -5.4395 -3.2589 15 7 6.8888 -6.2118 -2.2705 16 14 6.9745 -5.8914 -5.0143 17 1 6.4452 -4.8604 -5.9427 18 1 8.4522 -5.9619 -5.1425 19 1 6.3846 -7.2115 -5.3529 20 6 2.2167 -1.1914 -0.0059 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3632 0.8900 0.5139 24 1 1.6963 2.1372 0.0004 25 1 5.2876 -2.3173 0.5852 26 1 3.7707 -3.2357 0.4311 27 1 4.4609 -2.2234 -2.1137 28 1 7.3955 -7.0196 -2.4483 29 1 1.6962 -2.1376 -0.0105 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282068292.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:49 Heat of formation + Delta-G solvation = -46.249962 kcal Electronic energy + Delta-G solvation = -15608.802494 eV Core-core repulsion = 12749.247949 eV Total energy + Delta-G solvation = -2859.554545 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.54952 -39.33832 -37.73108 -35.80774 -34.85207 -34.42841 -32.26191 -29.13251 -28.76879 -26.91059 -24.21030 -22.44913 -21.67764 -19.39528 -18.09232 -17.62845 -17.36778 -16.76988 -16.39203 -15.92781 -15.47271 -15.24550 -14.57782 -14.14003 -13.99501 -13.75745 -13.44793 -13.35440 -13.13870 -12.74906 -12.69738 -12.58004 -12.53781 -12.31172 -11.98300 -10.95595 -10.69695 -10.59736 -10.16777 -9.80260 -9.56984 -8.30816 -6.87709 -0.20450 0.05902 0.73168 1.40221 1.40699 1.58724 2.22923 2.41591 2.45040 3.05303 3.30617 3.52407 3.62104 3.84968 3.96044 4.12035 4.31511 4.47298 4.67727 4.71036 4.82704 4.88998 5.14406 5.23218 5.30931 5.50640 5.83239 6.09914 6.21870 6.67475 6.84994 7.45796 8.44519 8.64831 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.027169 B = 0.004611 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.341124 B = 6071.121703 C = 6448.683690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.021 4.021 3 C -0.147 4.147 4 C 0.161 3.839 5 Cl -0.033 7.033 6 N -0.507 5.507 7 C 0.130 3.870 8 C 0.186 3.814 9 N -0.747 5.747 10 C 0.540 3.460 11 O -0.629 6.629 12 C -0.571 4.571 13 H 0.086 0.914 14 C 0.028 3.972 15 N -0.820 5.820 16 Si 1.000 3.000 17 H -0.248 1.248 18 H -0.269 1.269 19 H -0.265 1.265 20 C -0.153 4.153 21 H 0.094 0.906 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.178 0.822 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.391 0.609 28 H 0.276 0.724 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.527 15.493 1.434 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.029 4.029 3 C -0.168 4.168 4 C -0.004 4.004 5 Cl -0.005 7.005 6 N -0.220 5.220 7 C -0.007 4.007 8 C 0.061 3.939 9 N -0.401 5.401 10 C 0.345 3.655 11 O -0.516 6.516 12 C -0.607 4.607 13 H 0.104 0.896 14 C -0.187 4.187 15 N -0.449 5.449 16 Si 0.819 3.181 17 H -0.171 1.171 18 H -0.194 1.194 19 H -0.190 1.190 20 C -0.173 4.173 21 H 0.113 0.887 22 H 0.104 0.896 23 H 0.114 0.886 24 H 0.195 0.805 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.224 0.776 28 H 0.086 0.914 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.213 14.957 2.205 20.079 hybrid contribution -0.008 0.024 -0.629 0.630 sum -13.222 14.981 1.575 20.043 Atomic orbital electron populations 1.20958 0.86091 1.05247 1.04562 1.20752 0.99119 0.90784 0.92288 1.22072 0.91173 1.01452 1.02079 1.21910 0.90011 0.88027 1.00404 1.98392 1.76913 1.28632 1.96543 1.66654 1.43179 0.98133 1.14047 1.20947 0.92110 0.91183 0.96419 1.19684 0.97187 0.90759 0.86245 1.45765 1.61093 1.26928 1.06357 1.18619 0.77163 0.79147 0.90597 1.90558 1.59473 1.53653 1.47904 1.21415 1.37771 1.09770 0.91786 0.89636 1.26987 0.93081 0.94749 1.03858 1.70185 1.28346 1.11144 1.35258 0.84942 0.78439 0.79034 0.75673 1.17150 1.19404 1.18977 1.22215 0.93222 1.01128 1.00755 0.88735 0.89590 0.88607 0.80475 0.94074 0.91059 0.77570 0.91433 0.82321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.06 71.24 0.72 -0.35 15 2 C -0.02 -0.39 5.92 -19.67 -0.12 -0.50 15 3 C -0.15 -2.85 9.59 22.39 0.21 -2.63 15 4 C 0.16 4.36 7.27 84.70 0.62 4.98 15 5 Cl -0.03 -0.81 29.11 -2.72 -0.08 -0.89 15 6 N -0.51 -17.35 10.25 -174.85 -1.79 -19.14 15 7 C 0.13 4.29 6.15 42.54 0.26 4.55 15 8 C 0.19 7.72 5.98 85.64 0.51 8.23 15 9 N -0.75 -35.44 5.54 -471.13 -2.61 -38.05 15 10 C 0.54 32.20 7.75 86.36 0.67 32.87 15 11 O -0.63 -42.90 15.02 -4.33 -0.07 -42.96 15 12 C -0.57 -33.06 9.54 24.83 0.24 -32.82 15 13 H 0.09 4.48 7.85 -2.91 -0.02 4.46 15 14 C 0.03 1.61 5.50 85.31 0.47 2.08 15 15 N -0.82 -50.70 11.83 21.84 0.26 -50.44 15 16 Si 1.00 41.42 29.56 68.60 2.03 43.45 15 17 H -0.25 -9.56 7.11 99.48 0.71 -8.85 15 18 H -0.27 -10.77 7.11 99.48 0.71 -10.07 15 19 H -0.27 -10.43 7.11 99.48 0.71 -9.72 15 20 C -0.15 -3.74 9.43 22.36 0.21 -3.53 15 21 H 0.09 0.74 8.14 -2.39 -0.02 0.72 15 22 H 0.09 0.72 8.10 -2.39 -0.02 0.70 15 23 H 0.10 0.55 8.10 -2.39 -0.02 0.53 15 24 H 0.18 2.13 8.06 -2.91 -0.02 2.10 15 25 H 0.04 1.91 8.14 -2.39 -0.02 1.89 15 26 H 0.07 2.88 8.04 -2.39 -0.02 2.87 15 27 H 0.39 16.74 8.44 -92.71 -0.78 15.96 15 28 H 0.28 15.33 8.29 -92.71 -0.77 14.56 15 29 H 0.16 3.34 8.06 -2.91 -0.02 3.32 15 Total: -1.00 -78.62 281.04 1.93 -76.69 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.40 Total: 18.46 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 3.79 Total: 12.87 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.15 Total: -107.63 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.07 Total: -42.96 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -78.62 1.93 -76.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282068292.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.444 kcal (2) G-P(sol) polarization free energy of solvation -78.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds