Wall clock time and date at job start Sun Mar 29 2020 23:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00010 * 2 1 4 4 H 1.48490 * 109.47266 * 240.00452 * 3 2 1 5 5 H 1.48504 * 109.47005 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47065 * 120.00131 * 3 2 1 7 7 C 1.37882 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99835 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99840 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47021 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00087 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99471 * 179.97438 * 11 10 9 14 14 C 1.39454 * 119.99377 * 185.08770 * 13 11 10 15 15 C 1.39030 * 119.67940 * 174.91998 * 14 13 11 16 16 C 1.38355 * 119.11770 * 179.97438 * 15 14 13 17 17 C 1.38933 * 118.48277 * 359.97438 * 16 15 14 18 18 Cl 1.73594 * 120.35998 * 179.97438 * 17 16 15 19 19 C 1.38181 * 119.28447 * 359.97438 * 17 16 15 20 20 N 1.31943 * 120.83006 * 0.02634 * 19 17 16 21 21 H 0.97000 * 120.00424 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47452 * 60.00595 * 9 7 2 23 23 H 1.09001 * 109.47191 * 300.00155 * 9 7 2 24 24 H 1.08997 * 109.46870 * 59.99811 * 10 9 7 25 25 H 1.09001 * 109.46916 * 299.99896 * 10 9 7 26 26 H 0.96998 * 120.00480 * 5.09558 * 13 11 10 27 27 H 1.07997 * 120.44225 * 0.24937 * 15 14 13 28 28 H 1.07995 * 120.76048 * 180.02562 * 16 15 14 29 29 H 1.08000 * 119.58606 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1658 -6.1344 -0.0018 14 6 1.4726 -7.3396 -0.1095 15 6 2.1785 -8.5326 -0.2162 16 6 1.4791 -9.7216 -0.3219 17 6 0.0905 -9.6762 -0.3167 18 17 -0.8357 -11.1386 -0.4473 19 6 -0.5454 -8.4544 -0.2063 20 7 0.1493 -7.3370 -0.1071 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.8720 -3.6043 0.8894 25 1 2.8719 -3.6043 -0.8905 26 1 3.1329 -6.1361 0.0728 27 1 3.2585 -8.5316 -0.2121 28 1 2.0005 -10.6636 -0.4057 29 1 -1.6246 -8.4134 -0.2022 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291154201.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:03 Heat of formation + Delta-G solvation = -29.223019 kcal Electronic energy + Delta-G solvation = -15460.016247 eV Core-core repulsion = 12601.200046 eV Total energy + Delta-G solvation = -2858.816201 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.85603 -40.15349 -37.61464 -35.93600 -35.53854 -33.51843 -33.05083 -30.90719 -27.82225 -25.29981 -24.58778 -23.14857 -21.25577 -19.19897 -18.81965 -17.83027 -17.60530 -16.80298 -16.65261 -16.45768 -15.63549 -15.42943 -14.94081 -14.30017 -14.24227 -14.08460 -13.63280 -13.25549 -13.19365 -12.75987 -12.51296 -12.24696 -11.90424 -11.64308 -11.56888 -11.33851 -11.12426 -10.90364 -10.55176 -10.11864 -9.25051 -8.17114 -6.31512 -0.13996 0.19721 1.05347 1.43304 1.47880 1.55539 1.67380 1.90309 2.44111 2.73734 3.16026 3.33038 3.76171 3.83781 3.90924 4.09901 4.47513 4.54988 4.60220 4.71205 4.90728 5.06120 5.13101 5.49728 5.62263 5.63155 5.85516 6.16909 6.18560 6.86712 6.93067 7.34396 7.38966 8.95287 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.068477 B = 0.003488 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.796857 B = 8025.256561 C = 8407.675865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.041 3.959 10 C -0.114 4.114 11 C 0.500 3.500 12 O -0.522 6.522 13 N -0.649 5.649 14 C 0.341 3.659 15 C -0.177 4.177 16 C -0.032 4.032 17 C -0.125 4.125 18 Cl -0.052 7.052 19 C 0.128 3.872 20 N -0.517 5.517 21 H 0.262 0.738 22 H -0.019 1.019 23 H -0.018 1.018 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.440 0.560 27 H 0.189 0.811 28 H 0.185 0.815 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.956 -22.571 -0.656 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.216 1.216 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.003 3.997 10 C -0.154 4.154 11 C 0.288 3.712 12 O -0.394 6.394 13 N -0.298 5.298 14 C 0.109 3.891 15 C -0.200 4.200 16 C -0.058 4.058 17 C -0.156 4.156 18 Cl -0.024 7.024 19 C -0.030 4.030 20 N -0.232 5.232 21 H 0.071 0.929 22 H -0.001 1.001 23 H 0.000 1.000 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.281 0.719 27 H 0.207 0.793 28 H 0.202 0.798 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.462 -21.659 -0.600 22.916 hybrid contribution 0.255 0.203 -0.028 0.327 sum 7.717 -21.455 -0.627 22.810 Atomic orbital electron populations 1.70178 1.08388 1.27851 1.51417 1.26168 0.95711 1.04071 0.94674 0.85351 0.77994 0.77244 0.79506 1.18624 1.21570 1.18610 1.21683 0.94113 0.91431 1.50833 0.90236 1.18704 0.93758 0.92549 0.94705 1.21679 0.99277 0.88880 1.05551 1.21802 0.88401 0.86362 0.74627 1.90778 1.16178 1.87314 1.45117 1.43728 1.11861 1.02689 1.71506 1.19137 0.88734 0.87311 0.93869 1.21874 1.03311 0.89049 1.05756 1.21711 0.90964 1.00270 0.92885 1.22026 0.94161 0.88749 1.10627 1.98367 1.73381 1.34028 1.96584 1.22792 1.00972 0.85467 0.93791 1.67765 1.08151 1.30785 1.16545 0.92924 1.00053 0.99992 0.86919 0.87009 0.71912 0.79337 0.79793 0.81876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.78 13.29 21.45 0.28 -59.49 15 2 C -0.01 -0.51 5.46 84.66 0.46 -0.05 15 3 Si 0.98 43.97 29.54 68.60 2.03 46.00 15 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 15 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 15 6 H -0.26 -11.07 7.11 99.48 0.71 -10.37 15 7 C -0.54 -30.45 9.11 25.60 0.23 -30.22 15 8 H 0.08 3.99 7.74 -2.91 -0.02 3.97 15 9 C 0.04 2.23 4.26 29.85 0.13 2.36 15 10 C -0.11 -4.36 5.64 29.85 0.17 -4.19 15 11 C 0.50 19.19 7.79 87.66 0.68 19.87 15 12 O -0.52 -26.21 14.25 -3.01 -0.04 -26.26 15 13 N -0.65 -17.03 5.39 -308.43 -1.66 -18.69 15 14 C 0.34 9.21 7.42 132.90 0.99 10.19 15 15 C -0.18 -2.84 9.94 22.49 0.22 -2.62 15 16 C -0.03 -0.48 9.97 22.46 0.22 -0.26 15 17 C -0.13 -2.52 6.34 22.42 0.14 -2.38 15 18 Cl -0.05 -0.91 28.99 -2.72 -0.08 -0.99 15 19 C 0.13 3.49 10.97 84.66 0.93 4.42 15 20 N -0.52 -17.78 7.89 -192.93 -1.52 -19.30 15 21 H 0.26 15.71 8.31 -92.71 -0.77 14.93 15 22 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 15 23 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 15 24 H 0.11 3.64 8.14 -2.39 -0.02 3.62 15 25 H 0.11 3.64 8.14 -2.39 -0.02 3.62 15 26 H 0.44 6.74 8.70 -92.71 -0.81 5.93 15 27 H 0.19 1.27 8.06 -2.91 -0.02 1.25 15 28 H 0.18 1.33 8.06 -2.91 -0.02 1.31 15 29 H 0.16 4.12 8.06 -2.91 -0.02 4.10 15 Total: -1.00 -81.95 278.97 3.56 -78.39 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 0.37 Total: 3.22 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 4.18 Total: -2.88 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -2.90 Total: -97.49 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.04 Total: -26.26 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -81.95 3.56 -78.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291154201.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.165 kcal (2) G-P(sol) polarization free energy of solvation -81.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds