Wall clock time and date at job start Sun Mar 29 2020 23:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48498 * 109.47279 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47093 * 299.99831 * 3 2 1 6 6 H 1.48500 * 109.47328 * 59.99512 * 3 2 1 7 7 C 1.37875 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47192 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99861 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00036 * 180.27464 * 11 10 9 14 14 C 1.40003 * 120.00182 * 175.05273 * 13 11 10 15 15 C 1.39304 * 120.47141 * 34.95310 * 14 13 11 16 16 C 1.38460 * 118.37527 * 180.02562 * 15 14 13 17 17 C 1.38430 * 119.22242 * 0.02562 * 16 15 14 18 18 Cl 1.73596 * 119.55581 * 180.02562 * 17 16 15 19 19 N 1.31930 * 120.88339 * 0.02562 * 17 16 15 20 20 C 1.31858 * 121.78140 * 359.70240 * 19 17 16 21 21 H 0.96998 * 119.99549 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47621 * 59.99432 * 9 7 2 23 23 H 1.09005 * 109.47077 * 299.99828 * 9 7 2 24 24 H 1.09004 * 109.47453 * 59.99902 * 10 9 7 25 25 H 1.09000 * 109.46841 * 299.99598 * 10 9 7 26 26 H 0.97005 * 119.99607 * 355.04579 * 13 11 10 27 27 H 1.07997 * 120.80930 * 359.97438 * 15 14 13 28 28 H 1.07995 * 120.39012 * 179.97438 * 16 15 14 29 29 H 1.08000 * 119.65817 * 180.28964 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2787 -4.9671 0.0011 13 7 2.1654 -6.1344 0.0069 14 6 1.4689 -7.3443 0.1120 15 6 0.2179 -7.4932 -0.4824 16 6 -0.4328 -8.7083 -0.3507 17 6 0.1758 -9.7271 0.3620 18 17 -0.6319 -11.2542 0.5320 19 7 1.3614 -9.5529 0.9138 20 6 2.0163 -8.4134 0.8074 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8719 -3.6044 0.8905 25 1 2.8717 -3.6044 -0.8895 26 1 3.1330 -6.1361 -0.0620 27 1 -0.2337 -6.6805 -1.0319 28 1 -1.4041 -8.8592 -0.7981 29 1 2.9872 -8.3099 1.2690 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292352392.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:16 Heat of formation + Delta-G solvation = -17.658065 kcal Electronic energy + Delta-G solvation = -15445.659557 eV Core-core repulsion = 12587.344850 eV Total energy + Delta-G solvation = -2858.314707 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.86215 -39.14596 -36.77071 -34.96813 -33.63484 -32.47434 -31.29771 -29.72490 -25.96627 -24.13669 -23.50442 -21.61381 -19.99575 -17.99736 -17.28974 -17.17730 -16.48671 -15.78657 -15.07037 -14.59913 -14.50676 -14.44490 -13.62641 -13.41207 -12.88507 -12.54772 -12.27738 -11.93044 -11.46821 -11.31298 -11.02509 -10.71809 -10.66509 -10.12105 -10.06706 -9.94240 -9.73783 -9.30294 -9.15900 -8.43004 -8.34262 -6.05375 -4.10438 0.71020 1.03119 1.68374 2.81667 3.06001 3.27217 3.34982 3.37679 3.52244 4.29075 4.39927 4.64674 4.73893 4.82370 5.30195 5.31990 5.35539 5.61913 5.88429 6.00922 6.04056 6.05888 6.58203 6.68231 7.38947 7.50967 7.63046 7.70618 7.94678 8.22109 8.37671 8.97396 9.54057 11.05498 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.070524 B = 0.003437 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.934874 B = 8144.739850 C = 8446.688724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.511 3.489 12 O -0.511 6.511 13 N -0.680 5.680 14 C 0.114 3.886 15 C -0.071 4.071 16 C -0.131 4.131 17 C 0.147 3.853 18 Cl -0.039 7.039 19 N -0.461 5.461 20 C 0.088 3.912 21 H 0.261 0.739 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.414 0.586 27 H 0.162 0.838 28 H 0.147 0.853 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 -17.964 -0.896 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.168 4.168 11 C 0.301 3.699 12 O -0.384 6.384 13 N -0.327 5.327 14 C 0.015 3.985 15 C -0.099 4.099 16 C -0.152 4.152 17 C -0.018 4.018 18 Cl -0.011 7.011 19 N -0.171 5.171 20 C -0.073 4.073 21 H 0.071 0.929 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.250 0.750 27 H 0.180 0.820 28 H 0.165 0.835 29 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.100 -18.561 -0.404 18.823 hybrid contribution 0.483 1.420 -0.389 1.549 sum 3.582 -17.141 -0.792 17.530 Atomic orbital electron populations 1.70001 1.06085 1.26646 1.49966 1.25029 0.94848 0.99349 0.95144 0.86511 0.79982 0.83672 0.77651 1.19706 1.20969 1.20972 1.21213 0.93006 0.90838 1.51718 0.92424 1.18939 0.93131 0.89331 0.98788 1.21938 1.00901 0.90789 1.03141 1.22000 0.88884 0.85367 0.73661 1.90676 1.14400 1.87062 1.46261 1.43941 1.10987 1.03721 1.74048 1.18985 0.94670 0.87905 0.96905 1.21875 0.94098 0.97183 0.96755 1.21798 1.01676 0.91883 0.99835 1.21522 0.92189 0.88854 0.99266 1.98389 1.76560 1.29437 1.96710 1.66906 1.07301 1.24085 1.18822 1.22461 1.00540 0.87370 0.96918 0.92900 0.95682 0.95681 0.89526 0.89553 0.74954 0.82023 0.83478 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.82 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 15 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 15 7 C -0.53 -14.33 9.11 -34.44 -0.31 -14.64 15 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 15 9 C 0.04 0.90 4.26 -27.88 -0.12 0.78 15 10 C -0.13 -2.30 5.64 -27.88 -0.16 -2.46 15 11 C 0.51 8.62 7.69 -10.98 -0.08 8.53 15 12 O -0.51 -10.63 13.46 5.55 0.07 -10.55 15 13 N -0.68 -8.30 5.35 -9.76 -0.05 -8.35 15 14 C 0.11 1.44 6.32 -83.53 -0.53 0.91 15 15 C -0.07 -0.96 8.81 -39.10 -0.34 -1.30 15 16 C -0.13 -1.55 9.87 -39.43 -0.39 -1.94 15 17 C 0.15 1.83 7.27 -17.44 -0.13 1.71 15 18 Cl -0.04 -0.43 29.10 -51.86 -1.51 -1.94 15 19 N -0.46 -5.98 10.33 -10.21 -0.11 -6.09 15 20 C 0.09 1.00 11.12 -17.34 -0.19 0.80 15 21 H 0.26 7.33 8.31 -40.82 -0.34 7.00 15 22 H 0.02 0.69 8.10 -51.93 -0.42 0.27 15 23 H 0.02 0.69 8.10 -51.93 -0.42 0.27 15 24 H 0.09 1.41 8.14 -51.93 -0.42 0.98 15 25 H 0.09 1.38 8.14 -51.93 -0.42 0.96 15 26 H 0.41 3.45 8.83 -40.82 -0.36 3.09 15 27 H 0.16 2.40 6.32 -52.49 -0.33 2.07 15 28 H 0.15 1.40 8.06 -52.49 -0.42 0.98 15 29 H 0.17 1.35 8.06 -52.49 -0.42 0.93 15 LS Contribution 277.73 15.07 4.19 4.19 Total: -1.00 -32.46 277.73 -6.81 -39.27 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -2.77 Total: -0.62 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.35 Total: -6.07 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.58 Total: -40.25 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.51 Total: -1.94 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.46 -6.81 -39.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292352392.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.616 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds