Wall clock time and date at job start Sun Mar 29 2020 23:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48498 * 109.47279 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47093 * 299.99831 * 3 2 1 6 6 H 1.48500 * 109.47328 * 59.99512 * 3 2 1 7 7 C 1.37875 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47192 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99861 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00036 * 180.27464 * 11 10 9 14 14 C 1.40003 * 120.00182 * 175.05273 * 13 11 10 15 15 C 1.39304 * 120.47141 * 34.95310 * 14 13 11 16 16 C 1.38460 * 118.37527 * 180.02562 * 15 14 13 17 17 C 1.38430 * 119.22242 * 0.02562 * 16 15 14 18 18 Cl 1.73596 * 119.55581 * 180.02562 * 17 16 15 19 19 N 1.31930 * 120.88339 * 0.02562 * 17 16 15 20 20 C 1.31858 * 121.78140 * 359.70240 * 19 17 16 21 21 H 0.96998 * 119.99549 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47621 * 59.99432 * 9 7 2 23 23 H 1.09005 * 109.47077 * 299.99828 * 9 7 2 24 24 H 1.09004 * 109.47453 * 59.99902 * 10 9 7 25 25 H 1.09000 * 109.46841 * 299.99598 * 10 9 7 26 26 H 0.97005 * 119.99607 * 355.04579 * 13 11 10 27 27 H 1.07997 * 120.80930 * 359.97438 * 15 14 13 28 28 H 1.07995 * 120.39012 * 179.97438 * 16 15 14 29 29 H 1.08000 * 119.65817 * 180.28964 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2787 -4.9671 0.0011 13 7 2.1654 -6.1344 0.0069 14 6 1.4689 -7.3443 0.1120 15 6 0.2179 -7.4932 -0.4824 16 6 -0.4328 -8.7083 -0.3507 17 6 0.1758 -9.7271 0.3620 18 17 -0.6319 -11.2542 0.5320 19 7 1.3614 -9.5529 0.9138 20 6 2.0163 -8.4134 0.8074 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8719 -3.6044 0.8905 25 1 2.8717 -3.6044 -0.8895 26 1 3.1330 -6.1361 -0.0620 27 1 -0.2337 -6.6805 -1.0319 28 1 -1.4041 -8.8592 -0.7981 29 1 2.9872 -8.3099 1.2690 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292352392.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:16 Heat of formation + Delta-G solvation = -39.975946 kcal Electronic energy + Delta-G solvation = -15446.627333 eV Core-core repulsion = 12587.344850 eV Total energy + Delta-G solvation = -2859.282483 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.94244 -40.36000 -37.70944 -36.16775 -35.56814 -33.55524 -32.98780 -30.90862 -27.76679 -25.19762 -24.75275 -23.19448 -21.35376 -19.15308 -18.71143 -18.26279 -17.88584 -17.21921 -16.47338 -16.40298 -15.55246 -15.48138 -15.04415 -14.54362 -14.28328 -14.20193 -13.62373 -13.24935 -12.96836 -12.83572 -12.45495 -12.36602 -11.92735 -11.79672 -11.64846 -11.30858 -11.17936 -10.91251 -10.56803 -10.48380 -9.37054 -8.18019 -6.31228 -0.27152 0.05053 0.75025 1.44174 1.44534 1.52313 1.57753 1.94350 2.43944 2.55343 3.16140 3.41572 3.65712 3.76431 3.82336 4.08398 4.48458 4.51212 4.55663 4.64882 4.91954 5.00815 5.11433 5.50049 5.55319 5.63577 5.86005 6.17408 6.34526 6.55682 6.87567 7.11145 7.39362 8.94556 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.070524 B = 0.003437 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.934874 B = 8144.739850 C = 8446.688724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.971 3.029 4 H -0.251 1.251 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.039 3.961 10 C -0.116 4.116 11 C 0.515 3.485 12 O -0.560 6.560 13 N -0.654 5.654 14 C 0.100 3.900 15 C -0.087 4.087 16 C -0.129 4.129 17 C 0.140 3.860 18 Cl -0.028 7.028 19 N -0.476 5.476 20 C 0.103 3.897 21 H 0.262 0.738 22 H -0.014 1.014 23 H -0.016 1.016 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.436 0.564 27 H 0.143 0.857 28 H 0.165 0.835 29 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.387 -18.618 -0.636 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.796 3.204 4 H -0.175 1.175 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.578 4.578 8 H 0.097 0.903 9 C 0.001 3.999 10 C -0.155 4.155 11 C 0.306 3.694 12 O -0.437 6.437 13 N -0.302 5.302 14 C 0.002 3.998 15 C -0.115 4.115 16 C -0.151 4.151 17 C -0.024 4.024 18 Cl 0.001 6.999 19 N -0.187 5.187 20 C -0.058 4.058 21 H 0.070 0.930 22 H 0.004 0.996 23 H 0.002 0.998 24 H 0.131 0.869 25 H 0.133 0.867 26 H 0.277 0.723 27 H 0.160 0.840 28 H 0.183 0.817 29 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.720 -19.269 -0.148 20.100 hybrid contribution -0.348 1.512 -0.469 1.621 sum 5.372 -17.756 -0.617 18.561 Atomic orbital electron populations 1.70174 1.08257 1.27675 1.51654 1.26104 0.95684 1.03884 0.94793 0.85307 0.79435 0.78325 0.77379 1.17477 1.20848 1.20925 1.21752 0.94130 0.91525 1.50423 0.90349 1.18730 0.93791 0.92367 0.94997 1.21677 0.99346 0.88738 1.05776 1.21688 0.88076 0.86336 0.73326 1.90677 1.16437 1.87773 1.48816 1.43453 1.11876 1.02319 1.72535 1.19087 0.94707 0.88218 0.97811 1.21847 0.94933 0.97316 0.97379 1.21930 1.02313 0.91194 0.99624 1.21719 0.92291 0.89401 0.99037 1.98391 1.76336 1.28590 1.96621 1.67009 1.07636 1.24714 1.19322 1.22950 1.01316 0.86041 0.95464 0.92951 0.99555 0.99792 0.86876 0.86746 0.72346 0.83973 0.81713 0.78015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.79 13.29 21.45 0.28 -57.51 15 2 C -0.01 -0.40 5.46 84.65 0.46 0.06 15 3 Si 0.97 42.88 29.54 68.60 2.03 44.91 15 4 H -0.25 -10.15 7.11 99.48 0.71 -9.44 15 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 6 H -0.28 -12.39 7.11 99.48 0.71 -11.69 15 7 C -0.54 -29.13 9.11 25.60 0.23 -28.90 15 8 H 0.08 3.81 7.74 -2.91 -0.02 3.79 15 9 C 0.04 2.01 4.26 29.85 0.13 2.14 15 10 C -0.12 -4.02 5.64 29.85 0.17 -3.85 15 11 C 0.52 17.12 7.69 87.66 0.67 17.79 15 12 O -0.56 -24.14 13.46 -3.05 -0.04 -24.18 15 13 N -0.65 -14.59 5.35 -303.18 -1.62 -16.21 15 14 C 0.10 2.37 6.32 38.22 0.24 2.61 15 15 C -0.09 -2.32 8.81 22.58 0.20 -2.12 15 16 C -0.13 -2.99 9.87 22.37 0.22 -2.77 15 17 C 0.14 3.30 7.27 84.72 0.62 3.91 15 18 Cl -0.03 -0.57 29.10 -2.72 -0.08 -0.65 15 19 N -0.48 -11.35 10.33 -186.21 -1.92 -13.28 15 20 C 0.10 2.06 11.12 84.82 0.94 3.00 15 21 H 0.26 15.15 8.31 -92.71 -0.77 14.38 15 22 H -0.01 -0.82 8.10 -2.39 -0.02 -0.84 15 23 H -0.02 -0.97 8.10 -2.38 -0.02 -0.99 15 24 H 0.11 3.35 8.14 -2.38 -0.02 3.33 15 25 H 0.11 3.34 8.14 -2.39 -0.02 3.32 15 26 H 0.44 5.73 8.83 -92.70 -0.82 4.91 15 27 H 0.14 4.42 6.32 -2.91 -0.02 4.40 15 28 H 0.17 3.05 8.06 -2.91 -0.02 3.03 15 29 H 0.20 2.43 8.06 -2.91 -0.02 2.41 15 Total: -1.00 -72.98 277.73 2.90 -70.08 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 0.37 Total: 4.98 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 3.89 Total: -8.14 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -3.26 Total: -86.99 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.04 Total: -24.18 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -72.98 2.90 -70.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292352392.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.106 kcal (2) G-P(sol) polarization free energy of solvation -72.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds