Wall clock time and date at job start Sun Mar 29 2020 23:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47066 * 2 1 4 4 C 1.53000 * 109.47008 * 119.99855 * 2 1 3 5 5 C 1.53009 * 109.46687 * 174.66178 * 4 2 1 6 6 H 1.08995 * 109.46791 * 54.65517 * 5 4 2 7 7 C 1.53000 * 109.47158 * 294.65402 * 5 4 2 8 8 C 1.52995 * 109.47127 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.46769 * 60.00293 * 8 7 5 10 10 C 1.53000 * 109.47057 * 299.99751 * 9 8 7 11 11 H 1.08997 * 109.47037 * 299.99870 * 10 9 8 12 12 N 1.46904 * 109.47080 * 180.02562 * 10 9 8 13 13 C 1.46894 * 110.99921 * 153.87556 * 12 10 9 14 14 H 1.08993 * 109.47095 * 33.27433 * 13 12 10 15 15 C 1.53003 * 109.47094 * 273.26842 * 13 12 10 16 16 C 1.50704 * 109.46901 * 153.27509 * 13 12 10 17 17 H 1.08001 * 120.00123 * 4.57807 * 16 13 12 18 18 C 1.37875 * 119.99929 * 184.58098 * 16 13 12 19 19 N 1.31521 * 120.00041 * 8.75307 * 18 16 13 20 20 Si 1.86802 * 120.00028 * 188.74885 * 18 16 13 21 21 H 1.48491 * 109.47070 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46932 * 120.00165 * 20 18 16 23 23 H 1.48499 * 109.46935 * 239.99805 * 20 18 16 24 24 C 1.52995 * 109.47127 * 60.00469 * 10 9 8 25 25 H 1.08997 * 109.47259 * 64.49990 * 1 2 3 26 26 H 1.09003 * 109.46855 * 184.50098 * 1 2 3 27 27 H 1.09004 * 109.46934 * 304.49440 * 1 2 3 28 28 H 1.08996 * 109.46966 * 239.99814 * 2 1 3 29 29 H 1.08994 * 109.47568 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47205 * 300.00622 * 3 2 1 31 31 H 1.09004 * 109.46762 * 59.99963 * 3 2 1 32 32 H 1.09002 * 109.47157 * 54.66482 * 4 2 1 33 33 H 1.08991 * 109.47492 * 294.65689 * 4 2 1 34 34 H 1.08997 * 109.47037 * 300.00468 * 7 5 4 35 35 H 1.09005 * 109.46883 * 60.00057 * 7 5 4 36 36 H 1.08996 * 109.47296 * 179.97438 * 8 7 5 37 37 H 1.08994 * 109.47631 * 300.00762 * 8 7 5 38 38 H 1.08999 * 109.47156 * 179.97438 * 9 8 7 39 39 H 1.09003 * 109.47238 * 60.00004 * 9 8 7 40 40 H 1.00899 * 110.99514 * 29.91864 * 12 10 9 41 41 H 1.08991 * 109.47463 * 304.48099 * 15 13 12 42 42 H 1.09007 * 109.46488 * 64.47774 * 15 13 12 43 43 H 1.08999 * 109.46943 * 184.47143 * 15 13 12 44 44 H 0.96998 * 119.99713 * 1.78256 * 19 18 16 45 45 H 1.08994 * 109.47631 * 59.99238 * 24 10 9 46 46 H 1.08996 * 109.47296 * 180.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5642 -0.8385 1.1839 6 1 3.9988 0.1506 1.0393 7 6 3.9564 -1.7438 0.0145 8 6 5.4805 -1.8605 -0.0513 9 6 6.0028 -2.4605 1.2557 10 6 5.6106 -1.5552 2.4251 11 1 6.0449 -0.5660 2.2804 12 7 6.1127 -2.1310 3.6799 13 6 6.3246 -1.0864 4.6907 14 1 5.5804 -0.3005 4.5625 15 6 7.7257 -0.4941 4.5260 16 6 6.1910 -1.6851 6.0673 17 1 6.0443 -2.7489 6.1816 18 6 6.2560 -0.8745 7.1808 19 7 6.2612 0.4334 7.0427 20 14 6.3366 -1.6341 8.8855 21 1 6.3172 -3.1143 8.7693 22 1 7.5895 -1.2072 9.5589 23 1 5.1678 -1.1843 9.6835 24 6 4.0866 -1.4385 2.4909 25 1 -0.3633 0.4424 -0.9275 26 1 -0.3633 -1.0245 0.0807 27 1 -0.3633 0.5820 0.8470 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6008 -1.7176 1.2984 33 1 1.7570 -0.1552 2.1366 34 1 3.5217 -2.7328 0.1591 35 1 3.5846 -1.3161 -0.9167 36 1 5.7599 -2.5058 -0.8840 37 1 5.9148 -0.8713 -0.1959 38 1 7.0886 -2.5441 1.2088 39 1 5.5686 -3.4498 1.4005 40 1 6.9580 -2.6590 3.5227 41 1 8.4658 -1.2927 4.5751 42 1 7.7966 0.0083 3.5612 43 1 7.9126 0.2242 5.3243 44 1 6.1932 0.8280 6.1593 45 1 3.6522 -2.4276 2.6356 46 1 3.8071 -0.7932 3.3237 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309421120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:55 Heat of formation + Delta-G solvation = -67.621938 kcal Electronic energy + Delta-G solvation = -19829.723096 eV Core-core repulsion = 17137.290917 eV Total energy + Delta-G solvation = -2692.432179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38422 -38.02407 -36.45020 -34.30070 -32.24024 -31.22433 -28.28861 -28.01300 -27.05160 -26.80419 -23.50016 -22.50841 -22.06647 -20.79340 -20.29499 -18.84048 -16.86186 -16.23823 -15.95693 -15.81441 -15.55256 -15.44056 -14.87056 -14.78235 -14.33730 -14.16503 -13.80376 -13.62847 -13.33289 -13.08530 -13.01749 -12.90257 -12.65153 -12.57072 -12.48271 -12.27046 -12.11269 -12.04390 -11.92648 -11.76059 -11.70144 -11.47068 -11.17007 -10.95242 -10.82534 -10.64085 -10.38919 -9.05200 -8.57197 -6.26963 1.53334 1.61998 1.79570 2.57996 3.20291 3.37212 3.74134 3.76900 3.99494 4.04633 4.15515 4.17766 4.33265 4.38306 4.45266 4.53389 4.57046 4.63467 4.66070 4.68365 4.72639 4.76083 4.80004 4.83427 4.92721 5.01028 5.04325 5.10036 5.10599 5.13204 5.22144 5.24105 5.29379 5.36803 5.37167 5.41593 5.44171 5.46959 5.59055 5.64443 5.99305 6.17479 6.53219 6.77207 6.80121 7.50886 8.78701 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.005005 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.812495 B = 5592.962543 C = 6247.647027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.106 4.106 5 C -0.081 4.081 6 H 0.061 0.939 7 C -0.106 4.106 8 C -0.111 4.111 9 C -0.112 4.112 10 C 0.088 3.912 11 H 0.015 0.985 12 N -0.681 5.681 13 C 0.205 3.795 14 H -0.008 1.008 15 C -0.158 4.158 16 C -0.589 4.589 17 H 0.045 0.955 18 C -0.032 4.032 19 N -0.938 5.938 20 Si 1.118 2.882 21 H -0.274 1.274 22 H -0.279 1.279 23 H -0.283 1.283 24 C -0.091 4.091 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.332 0.668 41 H 0.047 0.953 42 H 0.033 0.967 43 H 0.037 0.963 44 H 0.256 0.744 45 H 0.056 0.944 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.565 -2.885 -17.655 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.144 4.144 5 C -0.100 4.100 6 H 0.079 0.921 7 C -0.143 4.143 8 C -0.149 4.149 9 C -0.150 4.150 10 C -0.022 4.022 11 H 0.033 0.967 12 N -0.311 5.311 13 C 0.096 3.904 14 H 0.010 0.990 15 C -0.218 4.218 16 C -0.628 4.628 17 H 0.063 0.937 18 C -0.230 4.230 19 N -0.576 5.576 20 Si 0.941 3.059 21 H -0.199 1.199 22 H -0.204 1.204 23 H -0.209 1.209 24 C -0.129 4.129 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.149 0.851 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.087 -2.701 -15.819 17.543 hybrid contribution 0.809 0.510 -1.373 1.673 sum -6.278 -2.191 -17.192 18.433 Atomic orbital electron populations 1.21842 0.94797 1.01882 1.01847 1.21139 0.95949 0.96022 0.98002 1.21903 1.00949 0.96271 1.01601 1.21646 0.94402 1.00470 0.97868 1.21157 0.95636 0.98988 0.94184 0.92076 1.21591 0.95411 0.99583 0.97732 1.21493 0.96009 1.01016 0.96409 1.21671 1.00389 0.98990 0.93932 1.21532 0.95446 0.95671 0.89542 0.96739 1.60629 1.35979 1.26223 1.08235 1.19066 0.90715 0.89386 0.91257 0.98988 1.22337 1.00449 1.00382 0.98592 1.22296 1.52590 0.95599 0.92294 0.93687 1.27161 0.93197 0.94910 1.07690 1.70871 1.49062 1.11584 1.26118 0.82912 0.77281 0.74808 0.70891 1.19908 1.20427 1.20927 1.21460 0.94818 1.00032 0.96594 0.91685 0.92413 0.93498 0.89839 0.93025 0.91626 0.93840 0.91756 0.93943 0.91724 0.90009 0.89819 0.92457 0.92118 0.91332 0.85073 0.93396 0.94829 0.94431 0.93407 0.92490 0.96152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.19 71.98 0.66 -1.79 16 2 C -0.09 -1.74 2.79 -10.79 -0.03 -1.77 16 3 C -0.15 -2.92 8.96 71.98 0.65 -2.27 16 4 C -0.11 -2.54 4.15 30.60 0.13 -2.41 16 5 C -0.08 -2.13 2.06 -10.79 -0.02 -2.15 16 6 H 0.06 1.70 6.34 -2.39 -0.02 1.69 16 7 C -0.11 -2.21 4.97 30.59 0.15 -2.06 16 8 C -0.11 -2.39 5.92 30.60 0.18 -2.21 16 9 C -0.11 -3.06 5.18 30.60 0.16 -2.90 16 10 C 0.09 3.18 2.30 44.91 0.10 3.28 16 11 H 0.01 0.57 7.28 -2.39 -0.02 0.56 16 12 N -0.68 -29.77 6.05 -473.32 -2.86 -32.64 16 13 C 0.20 10.70 2.00 44.17 0.09 10.79 16 14 H -0.01 -0.45 6.54 -2.39 -0.02 -0.47 16 15 C -0.16 -7.63 8.87 71.98 0.64 -6.99 16 16 C -0.59 -34.25 8.77 25.60 0.22 -34.02 16 17 H 0.04 2.66 7.83 -2.91 -0.02 2.64 16 18 C -0.03 -1.87 5.17 84.65 0.44 -1.43 16 19 N -0.94 -58.10 12.89 21.45 0.28 -57.82 16 20 Si 1.12 51.86 29.91 68.60 2.05 53.92 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 24 C -0.09 -3.20 4.70 30.60 0.14 -3.06 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.84 8.14 -2.38 -0.02 0.83 16 28 H 0.08 1.38 6.34 -2.39 -0.02 1.36 16 29 H 0.05 1.06 6.47 -2.39 -0.02 1.05 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.38 6.47 -2.38 -0.02 1.37 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.59 8.12 -2.39 -0.02 1.57 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.33 13.53 7.99 -89.69 -0.72 12.81 16 41 H 0.05 2.17 8.05 -2.39 -0.02 2.15 16 42 H 0.03 1.44 7.62 -2.38 -0.02 1.42 16 43 H 0.04 1.99 6.33 -2.39 -0.02 1.97 16 44 H 0.26 16.08 6.18 -92.71 -0.57 15.51 16 45 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.02 0.85 7.53 -2.39 -0.02 0.83 16 Total: -1.00 -64.45 342.00 3.37 -61.08 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.39 Total: 24.46 kcal Atomic # 6 Polarization: -52.52 SS G_CDS: 3.51 Total: -49.01 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -2.59 Total: -90.45 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.05 Total: 53.92 kcal Total: -64.45 3.37 -61.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309421120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.542 kcal (2) G-P(sol) polarization free energy of solvation -64.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds