Wall clock time and date at job start Sun Mar 29 2020 23:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47381 * 2 1 4 4 C 1.46892 * 110.99781 * 288.01449 * 3 2 1 5 5 C 1.50704 * 109.47173 * 160.35638 * 4 3 2 6 6 H 1.08000 * 119.99908 * 4.65234 * 5 4 3 7 7 C 1.37878 * 120.00203 * 184.64795 * 5 4 3 8 8 N 1.31516 * 119.99998 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00018 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47004 * 60.00323 * 9 7 5 11 11 H 1.48496 * 109.47105 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47106 * 300.00229 * 9 7 5 13 13 C 1.46892 * 111.00219 * 164.05465 * 3 2 1 14 14 C 1.53000 * 109.47273 * 293.95649 * 13 3 2 15 15 C 1.53003 * 109.47539 * 175.00067 * 14 13 3 16 16 C 1.53000 * 109.47539 * 179.97438 * 15 14 13 17 17 C 1.52993 * 109.47023 * 299.99881 * 16 15 14 18 18 C 1.52997 * 109.47104 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47256 * 300.00248 * 17 16 15 20 20 C 1.53003 * 109.47234 * 60.00110 * 17 16 15 21 21 C 1.53000 * 109.47026 * 299.99888 * 20 17 16 22 22 H 1.09001 * 109.46507 * 179.54660 * 1 2 3 23 23 H 1.08996 * 109.46952 * 299.54377 * 1 2 3 24 24 H 1.09000 * 109.46798 * 59.55210 * 1 2 3 25 25 H 1.09004 * 109.47377 * 240.00107 * 2 1 3 26 26 H 1.09000 * 109.47215 * 120.00009 * 2 1 3 27 27 H 1.09004 * 109.47037 * 280.35374 * 4 3 2 28 28 H 1.08995 * 109.47918 * 40.35375 * 4 3 2 29 29 H 0.96998 * 119.99833 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47050 * 173.95848 * 13 3 2 31 31 H 1.09000 * 109.47355 * 53.95292 * 13 3 2 32 32 H 1.08998 * 109.47202 * 55.00239 * 14 13 3 33 33 H 1.09000 * 109.47338 * 59.99443 * 15 14 13 34 34 H 1.09010 * 109.46995 * 300.00541 * 15 14 13 35 35 H 1.09003 * 109.46866 * 179.97438 * 16 15 14 36 36 H 1.09004 * 109.46956 * 59.99804 * 16 15 14 37 37 H 1.09000 * 109.46794 * 60.00528 * 18 17 16 38 38 H 1.08999 * 109.47108 * 179.97438 * 18 17 16 39 39 H 1.08998 * 109.47468 * 300.00503 * 18 17 16 40 40 H 1.08990 * 109.47706 * 59.99860 * 19 17 16 41 41 H 1.08998 * 109.47064 * 180.02562 * 19 17 16 42 42 H 1.09003 * 109.46697 * 299.99503 * 19 17 16 43 43 H 1.09004 * 109.47302 * 59.99736 * 20 17 16 44 44 H 1.09000 * 109.47540 * 180.02562 * 20 17 16 45 45 H 1.09004 * 109.46956 * 300.00060 * 21 20 17 46 46 H 1.09003 * 109.47587 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7954 2.0226 -1.3041 5 6 1.8467 3.5205 -1.1464 6 1 2.1020 3.9545 -0.1910 7 6 1.5678 4.3369 -2.2219 8 7 1.2575 3.8085 -3.3856 9 14 1.6307 6.1936 -2.0262 10 1 2.9969 6.6015 -1.6109 11 1 1.2938 6.8394 -3.3202 12 1 0.6522 6.6158 -0.9920 13 6 3.4384 1.4418 0.3767 14 6 3.5976 0.9994 1.8327 15 6 5.0846 0.9387 2.1878 16 6 5.2437 0.4970 3.6439 17 6 4.5411 1.5001 4.5609 18 6 4.6996 1.0580 6.0170 19 6 5.1662 2.8843 4.3766 20 6 3.0540 1.5607 4.2059 21 6 2.8949 2.0025 2.7498 22 1 -0.3632 -1.0277 -0.0081 23 1 -0.3633 0.5067 0.8940 24 1 -0.3633 0.5208 -0.8860 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.5695 1.7041 -2.0023 28 1 0.8178 1.7310 -1.6879 29 1 1.0609 4.3829 -4.1421 30 1 3.8033 2.4628 0.2653 31 1 4.0128 0.7780 -0.2695 32 1 3.1523 0.0131 1.9635 33 1 5.5300 1.9250 2.0569 34 1 5.5854 0.2244 1.5341 35 1 6.3032 0.4534 3.8966 36 1 4.7983 -0.4892 3.7752 37 1 5.7590 1.0146 6.2701 38 1 4.1994 1.7729 6.6702 39 1 4.2541 0.0719 6.1479 40 1 5.0529 3.1991 3.3393 41 1 4.6658 3.5989 5.0302 42 1 6.2256 2.8411 4.6295 43 1 2.6086 0.5746 4.3372 44 1 2.5534 2.2757 4.8589 45 1 3.3403 2.9887 2.6185 46 1 1.8355 2.0453 2.4967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309487525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:22 Heat of formation + Delta-G solvation = -50.701579 kcal Electronic energy + Delta-G solvation = -20147.764774 eV Core-core repulsion = 17456.066317 eV Total energy + Delta-G solvation = -2691.698457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.65228 -38.46996 -34.97709 -34.25687 -31.60593 -31.54407 -29.49032 -28.12272 -27.46598 -24.75632 -24.21988 -23.50415 -21.92815 -20.69138 -19.21332 -18.53820 -16.80957 -16.35723 -16.20065 -15.65587 -15.55167 -15.43317 -14.76995 -14.73310 -14.22617 -14.17684 -13.88160 -13.43350 -13.17035 -13.04597 -12.89335 -12.72928 -12.68427 -12.56454 -12.55494 -12.30318 -12.14031 -12.08401 -12.04314 -11.73635 -11.56149 -11.41791 -11.25020 -10.85249 -10.76263 -10.65930 -10.54827 -8.92531 -8.17700 -6.27057 1.39518 1.42664 1.50526 2.40744 3.12863 3.33255 3.76626 3.86720 3.94493 4.14824 4.24067 4.34446 4.37892 4.48151 4.56503 4.60095 4.66296 4.74851 4.76528 4.79472 4.86103 4.92193 4.92686 5.00386 5.06171 5.06999 5.13486 5.17200 5.21746 5.26194 5.28632 5.29698 5.34984 5.35629 5.40735 5.42416 5.59171 5.60857 5.69101 5.72604 5.80398 6.12379 6.46972 6.71118 6.88713 7.41941 8.92685 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.020914 B = 0.005880 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.516407 B = 4760.599345 C = 5526.678254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.046 3.954 3 N -0.535 5.535 4 C 0.206 3.794 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.071 3.929 14 C -0.069 4.069 15 C -0.114 4.114 16 C -0.098 4.098 17 C -0.064 4.064 18 C -0.136 4.136 19 C -0.145 4.145 20 C -0.101 4.101 21 C -0.100 4.100 22 H 0.077 0.923 23 H 0.058 0.942 24 H 0.029 0.971 25 H 0.010 0.990 26 H 0.089 0.911 27 H -0.048 1.048 28 H 0.011 0.989 29 H 0.263 0.737 30 H 0.051 0.949 31 H 0.010 0.990 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 -7.172 16.961 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.081 4.081 3 N -0.259 5.259 4 C 0.080 3.920 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.577 5.577 9 Si 0.790 3.210 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.194 1.194 13 C -0.057 4.057 14 C -0.087 4.087 15 C -0.152 4.152 16 C -0.136 4.136 17 C -0.064 4.064 18 C -0.193 4.193 19 C -0.202 4.202 20 C -0.138 4.138 21 C -0.138 4.138 22 H 0.096 0.904 23 H 0.077 0.923 24 H 0.048 0.952 25 H 0.028 0.972 26 H 0.107 0.893 27 H -0.030 1.030 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.451 -6.868 17.134 19.554 hybrid contribution 0.261 0.625 -1.465 1.614 sum 6.712 -6.243 15.669 18.153 Atomic orbital electron populations 1.21691 0.94854 1.01509 1.01308 1.22168 0.96573 0.89589 0.99815 1.62085 1.17426 1.15731 1.30668 1.19409 0.93750 0.93975 0.84866 1.21413 1.45768 0.91910 0.96194 0.92287 1.25876 0.95042 1.03927 0.94799 1.70081 1.48706 1.37091 1.01855 0.85505 0.78915 0.79250 0.77370 1.19418 1.20798 1.19360 1.22027 0.88143 0.99576 0.95987 1.21097 0.96156 0.99147 0.92346 1.21589 0.94932 1.01428 0.97244 1.21522 1.00517 0.98402 0.93120 1.20535 0.94775 0.95416 0.95687 1.21821 1.01937 1.01227 0.94361 1.21959 1.00537 0.96256 1.01415 1.21572 0.95809 1.01194 0.95273 1.21384 1.00115 0.97885 0.94393 0.90444 0.92287 0.95217 0.97190 0.89290 1.03013 0.97082 0.92810 0.93070 0.97223 0.91101 0.92385 0.92220 0.91110 0.91625 0.92105 0.92634 0.92334 0.93349 0.92904 0.92169 0.91852 0.92238 0.93540 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.98 71.98 0.72 -3.96 16 2 C 0.05 1.70 5.55 86.30 0.48 2.18 16 3 N -0.53 -23.47 3.83 -900.81 -3.45 -26.93 16 4 C 0.21 11.33 4.59 85.56 0.39 11.72 16 5 C -0.51 -29.93 8.61 25.60 0.22 -29.71 16 6 H 0.06 3.39 7.66 -2.91 -0.02 3.37 16 7 C 0.00 0.06 5.46 84.65 0.46 0.52 16 8 N -0.94 -57.64 13.29 21.45 0.28 -57.36 16 9 Si 0.96 45.37 29.54 68.60 2.03 47.39 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 C 0.07 2.78 4.17 86.30 0.36 3.14 16 14 C -0.07 -2.04 2.14 -10.79 -0.02 -2.06 16 15 C -0.11 -2.82 4.93 30.60 0.15 -2.67 16 16 C -0.10 -1.93 4.73 30.59 0.14 -1.78 16 17 C -0.06 -1.26 0.77 -52.18 -0.04 -1.30 16 18 C -0.14 -2.15 8.47 71.98 0.61 -1.54 16 19 C -0.14 -3.01 7.78 71.98 0.56 -2.45 16 20 C -0.10 -2.32 4.73 30.60 0.14 -2.18 16 21 C -0.10 -3.00 4.82 30.60 0.15 -2.85 16 22 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.03 1.18 6.53 -2.39 -0.02 1.17 16 25 H 0.01 0.38 8.05 -2.38 -0.02 0.36 16 26 H 0.09 2.74 5.87 -2.39 -0.01 2.73 16 27 H -0.05 -2.87 8.00 -2.39 -0.02 -2.89 16 28 H 0.01 0.66 6.24 -2.39 -0.01 0.64 16 29 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.05 2.26 7.32 -2.39 -0.02 2.24 16 31 H 0.01 0.38 8.12 -2.39 -0.02 0.36 16 32 H 0.07 2.00 6.10 -2.39 -0.01 1.99 16 33 H 0.06 1.53 6.43 -2.39 -0.02 1.51 16 34 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 1.19 4.81 -2.39 -0.01 1.18 16 41 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.05 1.51 6.43 -2.38 -0.02 1.49 16 46 H 0.05 1.79 7.75 -2.39 -0.02 1.77 16 Total: -1.00 -63.58 340.02 4.09 -59.50 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.90 Total: 10.35 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: 4.33 Total: -32.95 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -3.17 Total: -84.29 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -63.58 4.09 -59.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309487525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.797 kcal (2) G-P(sol) polarization free energy of solvation -63.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds