Wall clock time and date at job start Mon Mar 30 2020 00:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47437 * 2 1 4 4 C 1.50705 * 109.46984 * 120.00388 * 2 1 3 5 5 H 1.08003 * 119.99915 * 120.00160 * 4 2 1 6 6 C 1.37880 * 119.99788 * 300.00059 * 4 2 1 7 7 N 1.31515 * 119.99606 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99897 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47095 * 59.99951 * 8 6 4 10 10 H 1.48502 * 109.47209 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47131 * 300.00127 * 8 6 4 12 12 N 1.46508 * 109.47310 * 240.00021 * 2 1 3 13 13 C 1.34781 * 119.99711 * 85.00095 * 12 2 1 14 14 O 1.21528 * 120.00014 * 0.02562 * 13 12 2 15 15 C 1.48081 * 119.99668 * 180.02562 * 13 12 2 16 16 N 1.32774 * 119.74080 * 0.02562 * 15 13 12 17 17 C 1.31466 * 121.65610 * 179.68092 * 16 15 13 18 18 C 1.38638 * 120.94029 * 0.58632 * 17 16 15 19 19 C 1.38512 * 119.37362 * 359.42478 * 18 17 16 20 20 C 1.38806 * 118.48014 * 0.27753 * 19 18 17 21 21 Cl 1.73599 * 120.49043 * 180.02562 * 20 19 18 22 22 H 1.08995 * 109.47296 * 299.99763 * 1 2 3 23 23 H 1.09000 * 109.46881 * 59.99886 * 1 2 3 24 24 H 1.09003 * 109.47600 * 179.97438 * 1 2 3 25 25 H 0.97005 * 119.99659 * 180.02562 * 7 6 4 26 26 H 0.97001 * 119.99962 * 265.00249 * 12 2 1 27 27 H 1.08003 * 119.52863 * 180.28926 * 17 16 15 28 28 H 1.08002 * 120.31580 * 179.70371 * 18 17 16 29 29 H 1.08005 * 120.76552 * 180.29735 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6991 -0.2395 2.4828 7 7 0.9434 0.8301 2.6033 8 14 2.3223 -1.1197 4.0079 9 1 3.8074 -1.1191 4.0077 10 1 1.8277 -0.4195 5.2205 11 1 1.8279 -2.5200 4.0080 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8585 1.1611 -2.4116 15 6 2.6402 -0.7164 -3.5664 16 7 2.9535 -2.0050 -3.5012 17 6 3.3888 -2.6633 -4.5526 18 6 3.5493 -2.0287 -5.7747 19 6 3.2345 -0.6847 -5.8889 20 6 2.7713 -0.0155 -4.7644 21 17 2.3607 1.6691 -4.8487 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.7094 1.1617 3.4844 26 1 2.2490 -1.6318 -1.1527 27 1 3.6293 -3.7123 -4.4619 28 1 3.9122 -2.5781 -6.6308 29 1 3.3464 -0.1691 -6.8313 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334931016.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:40 Heat of formation + Delta-G solvation = -2.007825 kcal Electronic energy + Delta-G solvation = -16112.299571 eV Core-core repulsion = 13254.663509 eV Total energy + Delta-G solvation = -2857.636062 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.45054 -38.32187 -36.42901 -34.76467 -32.89354 -32.11307 -31.19373 -28.76034 -25.23077 -24.64954 -23.55543 -21.36431 -19.56236 -18.15451 -16.89675 -16.52866 -15.87728 -15.09828 -14.89332 -14.83071 -14.18712 -13.61512 -13.37892 -13.03905 -12.44509 -12.30769 -11.90401 -11.64905 -11.23532 -10.98146 -10.92277 -10.66597 -10.27775 -10.18599 -9.97134 -9.94982 -9.03368 -8.97232 -8.84693 -8.50366 -7.84969 -6.08293 -4.17058 0.57218 0.94331 2.15612 3.10849 3.29487 3.34045 3.35812 3.78170 4.03959 4.29683 4.40366 4.55245 4.72547 4.92772 5.11129 5.24056 5.42605 5.73684 5.80149 6.29693 6.86604 7.01319 7.18039 7.46215 7.53600 7.66277 7.76220 7.95962 8.18005 8.69852 8.80112 9.11419 9.49801 10.97802 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.005665 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.025786 B = 4941.165847 C = 5570.118163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.683 5.683 13 C 0.545 3.455 14 O -0.526 6.526 15 C 0.102 3.898 16 N -0.443 5.443 17 C 0.097 3.903 18 C -0.151 4.151 19 C -0.079 4.079 20 C -0.046 4.046 21 Cl -0.016 7.016 22 H 0.091 0.909 23 H 0.015 0.985 24 H 0.027 0.973 25 H 0.265 0.735 26 H 0.399 0.601 27 H 0.167 0.833 28 H 0.145 0.855 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.498 -5.765 -16.395 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.330 5.330 13 C 0.327 3.673 14 O -0.403 6.403 15 C -0.037 4.037 16 N -0.155 5.155 17 C -0.063 4.063 18 C -0.171 4.171 19 C -0.105 4.105 20 C -0.076 4.076 21 Cl 0.013 6.987 22 H 0.110 0.890 23 H 0.034 0.966 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.233 0.767 27 H 0.184 0.816 28 H 0.163 0.837 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.040 -5.027 -15.404 16.699 hybrid contribution 0.536 -0.480 -0.078 0.724 sum 4.576 -5.507 -15.482 17.057 Atomic orbital electron populations 1.22076 0.98236 0.99231 1.00986 1.18833 0.91169 0.94068 0.79755 0.93094 1.21188 1.32445 1.13265 0.90222 0.91994 1.24879 0.94821 0.94968 0.99012 1.69897 1.35906 1.22427 1.23958 0.86492 0.79175 0.79597 0.81733 1.20178 1.21164 1.20133 1.46450 1.62770 1.14200 1.09609 1.17762 0.80146 0.86586 0.82844 1.90838 1.50798 1.14481 1.84178 1.21673 0.97708 0.90023 0.94320 1.67806 1.09061 1.06969 1.31646 1.22950 0.94805 1.00547 0.87949 1.22309 1.00408 0.94575 0.99791 1.21562 0.96527 0.94620 0.97816 1.22062 1.01302 0.89187 0.95097 1.98427 1.91161 1.10880 1.98217 0.89021 0.96555 0.95400 0.92542 0.76742 0.81624 0.83693 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.16 0.34 -3.40 15 2 C 0.26 6.91 2.56 -69.08 -0.18 6.73 15 3 H 0.05 1.52 7.58 -51.93 -0.39 1.12 15 4 C -0.53 -14.50 8.73 -34.44 -0.30 -14.80 15 5 H 0.06 1.62 7.74 -52.48 -0.41 1.22 15 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 15 7 N -0.88 -25.22 11.32 55.43 0.63 -24.59 15 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.96 15 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 10 H -0.29 -6.61 7.11 56.52 0.40 -6.20 15 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 12 N -0.68 -15.40 5.06 -55.80 -0.28 -15.68 15 13 C 0.54 11.79 7.77 -12.22 -0.09 11.69 15 14 O -0.53 -12.65 13.61 5.34 0.07 -12.58 15 15 C 0.10 1.79 6.75 -82.98 -0.56 1.23 15 16 N -0.44 -6.79 9.54 -9.78 -0.09 -6.88 15 17 C 0.10 1.05 11.18 -17.56 -0.20 0.85 15 18 C -0.15 -1.33 10.11 -39.33 -0.40 -1.73 15 19 C -0.08 -0.84 9.98 -39.27 -0.39 -1.23 15 20 C -0.05 -0.69 6.37 -38.93 -0.25 -0.94 15 21 Cl -0.02 -0.26 26.04 -51.86 -1.35 -1.61 15 22 H 0.09 2.51 6.07 -51.93 -0.32 2.20 15 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 15 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 26 H 0.40 8.28 7.87 -40.82 -0.32 7.96 15 27 H 0.17 1.20 8.06 -52.48 -0.42 0.77 15 28 H 0.15 0.72 8.06 -52.49 -0.42 0.29 15 29 H 0.15 1.13 8.06 -52.48 -0.42 0.71 15 LS Contribution 272.45 15.07 4.11 4.11 Total: -1.00 -31.17 272.45 -6.74 -37.91 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -2.68 Total: 3.24 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.12 Total: 0.12 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.25 Total: -47.15 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.07 Total: -12.58 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.35 Total: -1.61 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.17 -6.74 -37.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334931016.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.904 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds