Wall clock time and date at job start Mon Mar 30 2020 00:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99907 * 2 1 4 4 H 1.48498 * 109.46932 * 270.00310 * 3 2 1 5 5 H 1.48497 * 109.47217 * 30.00089 * 3 2 1 6 6 H 1.48505 * 109.47273 * 150.00387 * 3 2 1 7 7 C 1.38796 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00147 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.81009 * 99.99776 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46959 * 65.00303 * 10 9 7 12 12 C 1.52997 * 109.47317 * 59.99967 * 11 10 9 13 13 C 1.53000 * 109.47060 * 59.99960 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 F 1.39895 * 109.47517 * 59.99549 * 14 13 12 16 16 F 1.39901 * 109.47059 * 180.02562 * 14 13 12 17 17 F 1.39904 * 109.46640 * 299.99483 * 14 13 12 18 18 C 1.53002 * 109.47233 * 299.99657 * 13 12 11 19 19 C 1.52997 * 109.46817 * 60.00194 * 18 13 12 20 20 H 0.97000 * 119.99999 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47056 * 304.99998 * 10 9 7 22 22 H 1.08996 * 109.46929 * 299.99070 * 11 10 9 23 23 H 1.09002 * 109.46716 * 179.97438 * 11 10 9 24 24 H 1.09002 * 109.47153 * 299.99641 * 12 11 10 25 25 H 1.09001 * 109.46832 * 179.97438 * 12 11 10 26 26 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 27 27 H 1.08993 * 109.47662 * 180.02562 * 18 13 12 28 28 H 1.09002 * 109.47075 * 300.00932 * 18 13 12 29 29 H 1.09002 * 109.47153 * 60.00231 * 19 18 13 30 30 H 1.09001 * 109.47289 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 3.2984 -3.7522 1.3068 12 6 2.3759 -4.0583 2.4884 13 6 1.8430 -5.4869 2.3627 14 6 0.9200 -5.7927 3.5439 15 9 -0.1516 -4.8935 3.5435 16 9 0.4332 -7.0993 3.4293 17 9 1.6352 -5.6654 4.7396 18 6 1.0604 -5.6261 1.0553 19 6 1.9829 -5.3201 -0.1263 20 1 -0.4850 0.8400 0.0004 21 1 3.1732 -3.6734 -0.8424 22 1 3.6782 -2.7345 1.3963 23 1 4.1332 -4.4531 1.3070 24 1 1.5409 -3.3576 2.4885 25 1 2.9336 -3.9595 3.4198 26 1 2.6780 -6.1875 2.3626 27 1 0.6804 -6.6437 0.9659 28 1 0.2255 -4.9254 1.0553 29 1 2.8180 -6.0207 -0.1263 30 1 1.4254 -5.4188 -1.0577 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336272056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:26 Heat of formation + Delta-G solvation = -188.340078 kcal Electronic energy + Delta-G solvation = -17545.709003 eV Core-core repulsion = 14243.720277 eV Total energy + Delta-G solvation = -3301.988725 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.065 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.84248 -47.36799 -47.25313 -38.05151 -32.45770 -31.45742 -30.50572 -25.70862 -25.15077 -22.37739 -21.59585 -19.77382 -18.05727 -17.98957 -17.50615 -17.19469 -15.02750 -14.81785 -14.41773 -14.34992 -14.06512 -13.88698 -13.71154 -13.47103 -13.44706 -13.19026 -13.00370 -12.24724 -11.88383 -11.86098 -11.66748 -11.09166 -10.98422 -10.82384 -10.69332 -10.48036 -9.96430 -9.89976 -9.44873 -9.05734 -8.19632 -6.50672 -6.23373 -3.92710 3.04075 3.20635 3.21685 3.28354 3.53470 4.06568 4.19683 4.27462 4.34369 5.01473 5.05546 5.13538 5.32427 5.37644 5.58318 5.58859 5.73332 5.77572 5.86921 6.00510 6.20499 6.27662 6.49907 6.57109 6.60689 6.75643 6.86166 7.60745 8.36017 9.23571 10.84383 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.031400 B = 0.006761 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.507982 B = 4140.432710 C = 4353.974665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.073 0.927 9 S -0.114 6.114 10 C -0.094 4.094 11 C -0.098 4.098 12 C -0.120 4.120 13 C -0.123 4.123 14 C 0.451 3.549 15 F -0.175 7.175 16 F -0.191 7.191 17 F -0.190 7.190 18 C -0.120 4.120 19 C -0.088 4.088 20 H 0.267 0.733 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.104 0.896 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -11.133 4.388 12.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.664 4.664 8 H 0.091 0.909 9 S 0.115 5.885 10 C -0.223 4.223 11 C -0.137 4.137 12 C -0.158 4.158 13 C -0.142 4.142 14 C 0.397 3.603 15 F -0.157 7.157 16 F -0.173 7.173 17 F -0.171 7.171 18 C -0.157 4.157 19 C -0.127 4.127 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.122 0.878 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.654 -11.219 4.402 12.340 hybrid contribution 1.740 1.227 0.227 2.141 sum 4.393 -9.991 4.629 11.855 Atomic orbital electron populations 1.70011 1.05864 1.27285 1.47299 1.24986 0.95018 0.98973 0.94712 0.86230 0.79500 0.81878 0.78314 1.20377 1.20840 1.19723 1.22724 0.94507 0.90891 1.58300 0.90910 1.84582 1.08803 0.98896 1.96182 1.23167 1.01867 0.98137 0.99132 1.21564 0.96586 1.01939 0.93633 1.21726 1.02024 0.93445 0.98608 1.22454 0.97483 1.02140 0.92160 1.20797 0.80915 0.73768 0.84810 1.93208 1.58110 1.67671 1.96671 1.93135 1.89301 1.38705 1.96136 1.93142 1.78139 1.95654 1.50183 1.21637 0.99514 1.02399 0.92172 1.21236 0.98406 0.95086 0.97935 0.92343 0.91031 0.90606 0.93287 0.87781 0.91870 0.87952 0.91516 0.88875 0.92213 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.31 13.22 55.49 0.73 -24.57 16 2 C 0.07 1.98 5.49 -17.43 -0.10 1.89 16 3 Si 0.91 21.11 29.55 -169.99 -5.02 16.08 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.52 -13.99 8.86 30.94 0.27 -13.72 16 8 H 0.07 1.92 7.13 -52.48 -0.37 1.54 16 9 S -0.11 -2.76 17.96 -107.50 -1.93 -4.70 16 10 C -0.09 -1.75 2.90 -26.73 -0.08 -1.82 16 11 C -0.10 -1.66 5.31 -26.73 -0.14 -1.81 16 12 C -0.12 -1.97 4.74 -26.73 -0.13 -2.10 16 13 C -0.12 -1.75 2.17 -90.62 -0.20 -1.95 16 14 C 0.45 6.68 2.69 37.16 0.10 6.78 16 15 F -0.18 -2.97 16.28 2.25 0.04 -2.93 16 16 F -0.19 -2.72 16.80 2.25 0.04 -2.68 16 17 F -0.19 -2.80 16.80 2.25 0.04 -2.76 16 18 C -0.12 -1.78 4.74 -26.73 -0.13 -1.91 16 19 C -0.09 -1.33 5.45 -26.73 -0.15 -1.48 16 20 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 21 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 22 H 0.08 1.45 6.93 -51.93 -0.36 1.09 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.10 2.06 6.57 -51.93 -0.34 1.71 16 25 H 0.06 0.94 7.80 -51.93 -0.41 0.54 16 26 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 0.86 7.80 -51.93 -0.41 0.45 16 28 H 0.09 1.63 6.57 -51.93 -0.34 1.29 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 266.10 15.07 4.01 4.01 Total: -1.00 -28.66 266.10 -6.11 -34.77 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -3.48 Total: -1.11 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -0.54 Total: -16.11 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.73 Total: -24.57 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 0.11 Total: -8.37 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -1.93 Total: -4.70 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.66 -6.11 -34.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336272056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.569 kcal (2) G-P(sol) polarization free energy of solvation -28.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds