Wall clock time and date at job start Mon Mar 30 2020 00:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99907 * 2 1 4 4 H 1.48498 * 109.46932 * 270.00310 * 3 2 1 5 5 H 1.48497 * 109.47217 * 30.00089 * 3 2 1 6 6 H 1.48505 * 109.47273 * 150.00387 * 3 2 1 7 7 C 1.38796 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00147 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.81009 * 99.99776 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46959 * 65.00303 * 10 9 7 12 12 C 1.52997 * 109.47317 * 59.99967 * 11 10 9 13 13 C 1.53000 * 109.47060 * 59.99960 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 F 1.39895 * 109.47517 * 59.99549 * 14 13 12 16 16 F 1.39901 * 109.47059 * 180.02562 * 14 13 12 17 17 F 1.39904 * 109.46640 * 299.99483 * 14 13 12 18 18 C 1.53002 * 109.47233 * 299.99657 * 13 12 11 19 19 C 1.52997 * 109.46817 * 60.00194 * 18 13 12 20 20 H 0.97000 * 119.99999 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47056 * 304.99998 * 10 9 7 22 22 H 1.08996 * 109.46929 * 299.99070 * 11 10 9 23 23 H 1.09002 * 109.46716 * 179.97438 * 11 10 9 24 24 H 1.09002 * 109.47153 * 299.99641 * 12 11 10 25 25 H 1.09001 * 109.46832 * 179.97438 * 12 11 10 26 26 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 27 27 H 1.08993 * 109.47662 * 180.02562 * 18 13 12 28 28 H 1.09002 * 109.47075 * 300.00932 * 18 13 12 29 29 H 1.09002 * 109.47153 * 60.00231 * 19 18 13 30 30 H 1.09001 * 109.47289 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 3.2984 -3.7522 1.3068 12 6 2.3759 -4.0583 2.4884 13 6 1.8430 -5.4869 2.3627 14 6 0.9200 -5.7927 3.5439 15 9 -0.1516 -4.8935 3.5435 16 9 0.4332 -7.0993 3.4293 17 9 1.6352 -5.6654 4.7396 18 6 1.0604 -5.6261 1.0553 19 6 1.9829 -5.3201 -0.1263 20 1 -0.4850 0.8400 0.0004 21 1 3.1732 -3.6734 -0.8424 22 1 3.6782 -2.7345 1.3963 23 1 4.1332 -4.4531 1.3070 24 1 1.5409 -3.3576 2.4885 25 1 2.9336 -3.9595 3.4198 26 1 2.6780 -6.1875 2.3626 27 1 0.6804 -6.6437 0.9659 28 1 0.2255 -4.9254 1.0553 29 1 2.8180 -6.0207 -0.1263 30 1 1.4254 -5.4188 -1.0577 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336272056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:10:25 Heat of formation + Delta-G solvation = -203.730448 kcal Electronic energy + Delta-G solvation = -17546.376379 eV Core-core repulsion = 14243.720277 eV Total energy + Delta-G solvation = -3302.656102 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.065 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.03233 -48.52113 -48.49435 -39.33210 -34.54684 -32.75392 -31.78696 -27.67643 -26.54815 -23.65192 -22.87501 -21.11035 -19.58971 -19.17237 -19.13443 -18.42752 -16.84920 -16.33997 -16.01163 -15.56627 -15.37180 -15.17997 -14.93430 -14.78632 -14.67226 -14.66625 -14.34341 -13.57130 -13.52269 -13.26159 -13.05996 -12.93317 -12.72063 -12.41948 -12.03497 -11.92066 -11.43385 -11.25236 -11.07413 -11.03837 -9.98417 -8.49425 -8.31025 -6.01227 1.33202 1.38557 1.48169 1.82264 1.88223 2.32475 2.89661 3.03198 3.08613 3.17592 3.40242 3.83035 3.87178 4.08624 4.28384 4.30608 4.43921 4.50208 4.63533 4.77974 4.97073 5.03640 5.12271 5.24256 5.33119 5.39834 5.49134 5.53865 6.25027 7.12883 8.77443 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.031400 B = 0.006761 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.507982 B = 4140.432710 C = 4353.974665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.015 3.985 3 Si 0.982 3.018 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.072 0.928 9 S -0.175 6.175 10 C -0.078 4.078 11 C -0.093 4.093 12 C -0.118 4.118 13 C -0.114 4.114 14 C 0.452 3.548 15 F -0.194 7.194 16 F -0.185 7.185 17 F -0.188 7.188 18 C -0.119 4.119 19 C -0.083 4.083 20 H 0.267 0.733 21 H 0.066 0.934 22 H 0.047 0.953 23 H 0.091 0.909 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.141 0.859 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.912 -12.640 4.593 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.806 3.194 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.674 4.674 8 H 0.090 0.910 9 S 0.054 5.946 10 C -0.208 4.208 11 C -0.133 4.133 12 C -0.156 4.156 13 C -0.133 4.133 14 C 0.398 3.602 15 F -0.175 7.175 16 F -0.166 7.166 17 F -0.170 7.170 18 C -0.156 4.156 19 C -0.121 4.121 20 H 0.076 0.924 21 H 0.085 0.915 22 H 0.066 0.934 23 H 0.109 0.891 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.159 0.841 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.598 -12.737 4.607 14.304 hybrid contribution 1.157 1.591 0.174 1.975 sum 5.755 -11.146 4.780 13.424 Atomic orbital electron populations 1.70154 1.07530 1.28082 1.48858 1.25931 0.95855 1.02740 0.94459 0.85177 0.78348 0.77334 0.78578 1.19632 1.20527 1.18741 1.23057 0.94658 0.92324 1.57327 0.90989 1.84618 1.13384 1.00196 1.96353 1.23212 0.99278 0.98297 0.99982 1.21504 0.97541 1.01503 0.92708 1.21598 1.00667 0.94140 0.99151 1.22442 0.98227 1.01335 0.91318 1.20888 0.80546 0.73655 0.85092 1.93181 1.59138 1.68465 1.96759 1.93147 1.89259 1.38120 1.96115 1.93145 1.77974 1.95657 1.50207 1.21602 0.98569 1.02939 0.92520 1.21259 0.99750 0.93149 0.97915 0.92371 0.91533 0.93399 0.89113 0.91940 0.90380 0.84089 0.88855 0.92359 0.88007 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.53 13.22 21.65 0.29 -54.24 16 2 C 0.01 0.82 5.49 84.86 0.47 1.29 16 3 Si 0.98 43.81 29.55 68.60 2.03 45.83 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.53 -29.10 8.86 67.95 0.60 -28.50 16 8 H 0.07 3.85 7.13 -2.91 -0.02 3.83 16 9 S -0.17 -8.73 17.96 -56.49 -1.01 -9.74 16 10 C -0.08 -2.81 2.90 30.60 0.09 -2.72 16 11 C -0.09 -2.99 5.31 30.59 0.16 -2.82 16 12 C -0.12 -3.69 4.74 30.59 0.14 -3.55 16 13 C -0.11 -2.91 2.17 -10.79 -0.02 -2.94 16 14 C 0.45 12.52 2.69 71.98 0.19 12.71 16 15 F -0.19 -6.59 16.28 44.97 0.73 -5.86 16 16 F -0.18 -4.78 16.80 44.97 0.76 -4.02 16 17 F -0.19 -5.15 16.80 44.97 0.76 -4.40 16 18 C -0.12 -3.26 4.74 30.59 0.14 -3.11 16 19 C -0.08 -2.25 5.45 30.60 0.17 -2.08 16 20 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 21 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 22 H 0.05 1.79 6.93 -2.39 -0.02 1.78 16 23 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.06 2.52 6.57 -2.39 -0.02 2.50 16 25 H 0.08 2.18 7.80 -2.39 -0.02 2.17 16 26 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.09 2.08 7.80 -2.39 -0.02 2.07 16 28 H 0.06 2.04 6.57 -2.39 -0.02 2.03 16 29 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -63.98 266.10 6.63 -57.34 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.15 Total: 6.80 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 1.95 Total: -31.72 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.29 Total: -54.24 kcal Atomic # 9 Polarization: -16.52 SS G_CDS: 2.24 Total: -14.27 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.01 Total: -9.74 kcal Total: -63.98 6.63 -57.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336272056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.386 kcal (2) G-P(sol) polarization free energy of solvation -63.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds