Wall clock time and date at job start Mon Mar 30 2020 00:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39767 * 120.00256 * 2 1 4 4 C 1.39063 * 119.98457 * 359.97438 * 3 2 1 5 5 C 1.38179 * 120.25675 * 180.02562 * 4 3 2 6 6 C 1.38156 * 120.21990 * 359.97438 * 5 4 3 7 7 Cl 1.73596 * 120.01720 * 180.27814 * 6 5 4 8 8 C 1.39765 * 119.95995 * 0.02562 * 6 5 4 9 9 C 1.47666 * 120.12211 * 180.02562 * 8 6 5 10 10 O 1.21597 * 120.00485 * 0.02562 * 9 8 6 11 11 N 1.34779 * 119.99549 * 179.97438 * 9 8 6 12 12 C 1.36889 * 119.99797 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99501 * 0.02562 * 12 11 9 14 14 C 1.39040 * 119.99688 * 180.02562 * 12 11 9 15 15 N 1.31371 * 119.99373 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00506 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47449 * 89.99593 * 16 14 12 18 18 H 1.48500 * 109.47521 * 210.00194 * 16 14 12 19 19 H 1.48504 * 109.46831 * 329.99725 * 16 14 12 20 20 C 1.38556 * 119.98293 * 179.97438 * 3 2 1 21 21 H 1.08997 * 109.47102 * 300.00467 * 1 2 3 22 22 H 1.09003 * 109.46600 * 59.99394 * 1 2 3 23 23 H 1.08994 * 109.47124 * 179.97438 * 1 2 3 24 24 H 0.97004 * 119.99398 * 180.02562 * 2 1 3 25 25 H 1.08005 * 119.87082 * 0.02562 * 4 3 2 26 26 H 1.08003 * 119.88473 * 180.02562 * 5 4 3 27 27 H 0.96993 * 120.00126 * 0.02562 * 11 9 8 28 28 H 0.97003 * 119.99665 * 180.02562 * 15 14 12 29 29 H 1.08003 * 120.11286 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1639 1.2104 0.0000 4 6 1.4683 2.4146 -0.0005 5 6 2.1536 3.6145 -0.0011 6 6 3.5351 3.6263 -0.0005 7 17 4.3906 5.1367 0.0061 8 6 4.2434 2.4214 0.0000 9 6 5.7200 2.4298 0.0011 10 8 6.3221 3.4863 0.0021 11 7 6.4005 1.2664 0.0022 12 6 7.7693 1.2742 0.0038 13 1 8.3039 2.2126 0.0046 14 6 8.4713 0.0740 0.0043 15 7 9.7850 0.0815 0.0063 16 14 7.5466 -1.5490 0.0021 17 1 7.3036 -1.9785 -1.3985 18 1 8.3538 -2.5797 0.7030 19 1 6.2470 -1.3791 0.7003 20 6 3.5495 1.2099 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.9500 -0.8401 -0.0004 25 1 0.3883 2.4119 -0.0005 26 1 1.6073 4.5461 -0.0011 27 1 5.9203 0.4237 0.0018 28 1 10.2748 -0.7558 0.0063 29 1 4.0910 0.2755 0.0005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336521288.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:09 Heat of formation + Delta-G solvation = -0.778489 kcal Electronic energy + Delta-G solvation = -16098.616153 eV Core-core repulsion = 13241.033399 eV Total energy + Delta-G solvation = -2857.582754 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.62264 -37.87619 -36.05339 -34.83670 -34.02228 -31.95164 -30.80336 -29.40017 -26.03953 -25.05652 -23.00863 -21.64593 -19.43186 -18.78811 -17.10332 -16.66035 -15.88393 -15.06819 -14.94555 -14.47784 -14.10406 -13.81378 -13.77032 -13.43035 -12.73932 -12.51439 -12.43279 -12.19963 -11.80322 -11.32528 -11.28209 -11.24254 -10.67123 -10.33829 -10.02556 -9.66411 -9.59426 -8.74984 -8.25996 -8.24065 -7.30688 -6.43122 -3.85282 1.21157 1.58571 2.84792 2.95636 3.00601 3.08260 3.39049 3.56169 4.00866 4.37780 4.53856 4.90455 4.97371 5.08858 5.24881 5.26729 5.46613 5.52282 5.63983 5.74250 6.04872 6.14983 6.31190 6.56931 6.71082 7.26735 7.47431 7.60506 8.08440 8.51837 8.87244 9.33160 9.81381 10.68969 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.008235 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.705386 B = 3399.211567 C = 4933.771381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.756 5.756 3 C 0.210 3.790 4 C -0.185 4.185 5 C -0.072 4.072 6 C -0.051 4.051 7 Cl -0.046 7.046 8 C -0.045 4.045 9 C 0.471 3.529 10 O -0.552 6.552 11 N -0.571 5.571 12 C -0.294 4.294 13 H 0.125 0.875 14 C 0.042 3.958 15 N -0.868 5.868 16 Si 0.877 3.123 17 H -0.268 1.268 18 H -0.273 1.273 19 H -0.269 1.269 20 C -0.173 4.173 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.071 0.929 24 H 0.401 0.599 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.370 0.630 28 H 0.276 0.724 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.268 -1.856 -0.037 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.386 5.386 3 C 0.107 3.893 4 C -0.208 4.208 5 C -0.092 4.092 6 C -0.081 4.081 7 Cl -0.017 7.017 8 C -0.050 4.050 9 C 0.259 3.741 10 O -0.434 6.434 11 N -0.209 5.209 12 C -0.422 4.422 13 H 0.143 0.857 14 C -0.163 4.163 15 N -0.507 5.507 16 Si 0.703 3.297 17 H -0.193 1.193 18 H -0.198 1.198 19 H -0.194 1.194 20 C -0.197 4.197 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.235 0.765 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.204 0.796 28 H 0.087 0.913 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.732 -1.105 -0.035 18.765 hybrid contribution -0.376 -1.748 0.019 1.788 sum -19.109 -2.853 -0.016 19.321 Atomic orbital electron populations 1.21497 0.80348 1.02152 1.00982 1.44417 1.05538 1.05269 1.83410 1.17678 0.90699 0.86442 0.94460 1.20522 0.99373 0.90428 1.10518 1.20700 0.91664 0.98174 0.98618 1.20655 0.91660 0.87642 1.08181 1.98367 1.77594 1.29039 1.96680 1.19923 0.95211 0.91501 0.98346 1.17482 0.85457 0.84878 0.86263 1.90740 1.68952 1.29576 1.54180 1.42223 1.07523 1.06333 1.64863 1.19559 0.79196 0.96946 1.46544 0.85731 1.25105 0.95537 0.98155 0.97497 1.69603 1.05539 1.28048 1.47481 0.86692 0.79899 0.83941 0.79126 1.19288 1.19827 1.19416 1.20696 0.92020 0.97562 1.09389 0.93058 0.93060 0.91052 0.76508 0.85611 0.85103 0.79622 0.91305 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 9.94 59.85 0.59 1.29 15 2 N -0.76 -7.88 5.89 -65.42 -0.39 -8.27 15 3 C 0.21 2.87 6.65 -83.82 -0.56 2.31 15 4 C -0.19 -2.37 9.31 -39.30 -0.37 -2.73 15 5 C -0.07 -1.03 9.81 -39.63 -0.39 -1.42 15 6 C -0.05 -0.93 6.35 -39.04 -0.25 -1.18 15 7 Cl -0.05 -0.89 26.01 -51.86 -1.35 -2.24 15 8 C -0.04 -0.88 5.87 -104.96 -0.62 -1.50 15 9 C 0.47 11.51 7.71 -12.41 -0.10 11.41 15 10 O -0.55 -15.22 13.53 5.28 0.07 -15.15 15 11 N -0.57 -14.06 5.03 -11.89 -0.06 -14.12 15 12 C -0.29 -8.31 10.16 -15.00 -0.15 -8.46 15 13 H 0.13 3.99 7.38 -52.49 -0.39 3.61 15 14 C 0.04 1.13 5.50 -17.45 -0.10 1.03 15 15 N -0.87 -24.90 13.95 55.50 0.77 -24.13 15 16 Si 0.88 19.01 27.74 -169.99 -4.72 14.30 15 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 19 H -0.27 -5.30 6.52 56.52 0.37 -4.93 15 20 C -0.17 -2.85 9.38 -38.95 -0.37 -3.22 15 21 H 0.05 0.36 7.94 -51.93 -0.41 -0.05 15 22 H 0.05 0.36 7.94 -51.93 -0.41 -0.05 15 23 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 15 24 H 0.40 3.70 8.84 -40.82 -0.36 3.34 15 25 H 0.13 1.24 6.71 -52.48 -0.35 0.89 15 26 H 0.13 1.52 8.06 -52.48 -0.42 1.10 15 27 H 0.37 8.02 3.79 -40.82 -0.15 7.87 15 28 H 0.28 7.27 8.31 -40.82 -0.34 6.94 15 29 H 0.12 1.95 6.40 -52.48 -0.34 1.61 15 LS Contribution 267.09 15.07 4.02 4.02 Total: -1.00 -32.15 267.09 -6.36 -38.51 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -2.43 Total: 9.53 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.29 Total: -2.46 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.33 Total: -46.52 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.07 Total: -15.15 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.72 Total: 14.30 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.35 Total: -2.24 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.15 -6.36 -38.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336521288.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.730 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds