Wall clock time and date at job start Sun Mar 29 2020 23:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 N 1.46901 * 109.46769 * 294.99558 * 4 2 1 6 6 C 1.46893 * 111.00243 * 293.95721 * 5 4 2 7 7 C 1.46906 * 110.99853 * 170.00087 * 5 4 2 8 8 H 1.09000 * 109.47257 * 310.00208 * 7 5 4 9 9 C 1.53006 * 109.46965 * 70.00100 * 7 5 4 10 10 C 1.50693 * 109.47155 * 190.00173 * 7 5 4 11 11 H 1.08002 * 120.00119 * 0.02562 * 10 7 5 12 12 C 1.37881 * 120.00394 * 180.02562 * 10 7 5 13 13 N 1.31519 * 119.99538 * 359.97438 * 12 10 7 14 14 Si 1.86792 * 120.00401 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47089 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47128 * 119.99789 * 14 12 10 17 17 H 1.48499 * 109.47004 * 239.99869 * 14 12 10 18 18 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 19 19 C 1.52991 * 109.47237 * 180.02562 * 18 2 1 20 20 C 1.53002 * 109.47237 * 179.97438 * 19 18 2 21 21 C 1.53000 * 109.46776 * 60.00313 * 20 19 18 22 22 C 1.53005 * 109.47184 * 299.99474 * 21 20 19 23 23 C 1.52997 * 109.46540 * 60.00423 * 22 21 20 24 24 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 25 25 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 26 26 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 28 28 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 29 29 H 1.08999 * 109.47439 * 60.00146 * 6 5 4 30 30 H 1.08997 * 109.47257 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.46808 * 299.99830 * 6 5 4 32 32 H 1.09001 * 109.47141 * 299.99957 * 9 7 5 33 33 H 1.09000 * 109.47044 * 59.99978 * 9 7 5 34 34 H 1.09002 * 109.46733 * 180.02562 * 9 7 5 35 35 H 0.96996 * 120.00250 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47312 * 300.00535 * 18 2 1 37 37 H 1.09000 * 109.47256 * 300.00385 * 19 18 2 38 38 H 1.09004 * 109.47022 * 60.00184 * 19 18 2 39 39 H 1.09000 * 109.47312 * 300.00351 * 20 19 18 40 40 H 1.09007 * 109.47258 * 179.97438 * 20 19 18 41 41 H 1.09001 * 109.46952 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47630 * 60.00218 * 21 20 19 43 43 H 1.08990 * 109.47401 * 300.00831 * 22 21 20 44 44 H 1.08996 * 109.47355 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47181 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.47615 * 60.00286 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6514 0.0375 2.4456 6 6 2.3341 1.3374 2.4893 7 6 1.9124 -0.7356 3.6672 8 1 1.4856 -1.7333 3.5639 9 6 3.4224 -0.8472 3.8872 10 6 1.2830 -0.0396 4.8462 11 1 0.7427 0.8844 4.7025 12 6 1.3968 -0.5824 6.1086 13 7 2.0543 -1.7079 6.2835 14 14 0.6172 0.2807 7.5703 15 1 -0.0598 1.5197 7.1101 16 1 -0.3777 -0.6210 8.2047 17 1 1.6696 0.6298 8.5580 18 6 2.0401 -0.7214 -1.2492 19 6 3.5700 -0.7219 -1.2489 20 6 4.0800 -1.4439 -2.4978 21 6 3.5705 -0.7228 -3.7473 22 6 2.0405 -0.7223 -3.7477 23 6 1.5306 -0.0004 -2.4989 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2057 29 1 2.0679 1.9176 1.6058 30 1 2.0288 1.8782 3.3851 31 1 3.4126 1.1808 2.5099 32 1 3.8777 -1.3506 3.0344 33 1 3.8492 0.1505 3.9905 34 1 3.6160 -1.4212 4.7934 35 1 2.1341 -2.0901 7.1715 36 1 1.6767 -1.7490 -1.2492 37 1 3.9337 0.3056 -1.2487 38 1 3.9329 -1.2360 -0.3588 39 1 3.7163 -2.4714 -2.4975 40 1 5.1701 -1.4439 -2.4978 41 1 3.9343 -1.2368 -4.6371 42 1 3.9343 0.3047 -3.7477 43 1 1.6768 -1.7497 -3.7474 44 1 1.6775 -0.2082 -4.6377 45 1 0.4405 0.0004 -2.4993 46 1 1.8942 1.0272 -2.4991 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336653780.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:53 Heat of formation + Delta-G solvation = -32.464141 kcal Electronic energy + Delta-G solvation = -20029.646199 eV Core-core repulsion = 17338.738577 eV Total energy + Delta-G solvation = -2690.907622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.20944 -37.11256 -34.19838 -32.30321 -30.82803 -29.23633 -28.13820 -26.49684 -25.15746 -24.22764 -22.54195 -22.04397 -19.94772 -19.50471 -18.82467 -16.09804 -15.83518 -14.87707 -14.79891 -14.25735 -14.10361 -13.81861 -13.69355 -13.38386 -12.83325 -12.73884 -12.49973 -12.32997 -11.93503 -11.46602 -11.38370 -11.23018 -11.10488 -10.98937 -10.96602 -10.84906 -10.68128 -10.60368 -10.51869 -10.30591 -10.11749 -9.99542 -9.82446 -9.69719 -9.48822 -8.80537 -8.34129 -7.00859 -5.96421 -3.99475 3.32429 3.40228 3.45053 4.44855 4.66360 4.74062 4.78483 5.08827 5.19415 5.28000 5.35610 5.44606 5.49852 5.54019 5.55329 5.59374 5.67659 5.88358 5.92147 6.00565 6.02042 6.11809 6.16633 6.18653 6.21991 6.29956 6.31300 6.36949 6.39589 6.51156 6.51731 6.62630 6.73644 6.81087 6.88511 6.88760 6.98107 7.19994 7.55417 7.77199 7.90936 8.22252 8.46343 8.68765 9.07425 9.65448 11.10781 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.041881 B = 0.004486 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.404922 B = 6239.960057 C = 6557.075026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 H 0.066 0.934 4 C 0.059 3.941 5 N -0.532 5.532 6 C 0.035 3.965 7 C 0.210 3.790 8 H 0.036 0.964 9 C -0.170 4.170 10 C -0.495 4.495 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.895 3.105 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.286 1.286 18 C -0.080 4.080 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.114 4.114 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.026 0.974 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.014 0.986 32 H 0.005 0.995 33 H 0.030 0.970 34 H 0.086 0.914 35 H 0.258 0.742 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 2.029 -17.307 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.070 4.070 5 N -0.255 5.255 6 C -0.114 4.114 7 C 0.104 3.896 8 H 0.054 0.946 9 C -0.230 4.230 10 C -0.533 4.533 11 H 0.080 0.920 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.723 3.277 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.213 1.213 18 C -0.099 4.099 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.151 4.151 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.032 0.968 32 H 0.024 0.976 33 H 0.049 0.951 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.434 1.993 -17.176 17.350 hybrid contribution 0.618 0.175 0.951 1.148 sum 2.052 2.168 -16.225 16.497 Atomic orbital electron populations 1.21731 0.94991 1.01321 1.01288 1.21185 0.96315 0.99320 0.93289 0.91615 1.22138 0.97161 0.97161 0.90539 1.62284 1.56818 1.03763 1.02677 1.22234 0.95596 0.92734 1.00849 1.19295 0.91070 0.93471 0.85776 0.94602 1.22387 0.99955 0.99659 1.00958 1.21168 1.32623 1.08575 0.90971 0.91975 1.24934 0.95556 0.95087 0.98846 1.69901 1.42203 1.19156 1.22312 0.86490 0.78981 0.79665 0.82554 1.19768 1.21120 1.21265 1.21169 0.94834 0.99641 0.94261 1.21658 0.95690 1.00569 0.97558 1.21540 0.99831 0.99444 0.94860 1.21531 0.95892 1.00551 0.97627 1.21536 0.95574 1.00695 0.97848 1.21626 1.00462 0.99133 0.93924 0.91197 0.94012 0.93502 0.92040 0.95568 0.93903 0.91180 0.96794 0.97602 0.95114 0.89524 0.93172 0.91499 0.92315 0.91515 0.92179 0.92451 0.92614 0.92263 0.92203 0.92528 0.91716 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.73 37.16 0.32 -1.67 16 2 C -0.08 -1.21 1.89 -90.62 -0.17 -1.38 16 3 H 0.07 1.00 6.33 -51.93 -0.33 0.67 16 4 C 0.06 1.06 3.70 -3.82 -0.01 1.05 16 5 N -0.53 -11.39 4.16 -236.28 -0.98 -12.37 16 6 C 0.03 0.68 8.46 60.06 0.51 1.19 16 7 C 0.21 5.33 2.31 -68.86 -0.16 5.17 16 8 H 0.04 1.01 7.93 -51.93 -0.41 0.60 16 9 C -0.17 -4.18 8.22 37.16 0.31 -3.88 16 10 C -0.49 -13.64 7.91 -34.44 -0.27 -13.92 16 11 H 0.06 1.73 7.12 -52.49 -0.37 1.35 16 12 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 13 N -0.90 -25.77 11.32 55.43 0.63 -25.14 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 C -0.08 -0.99 1.77 -90.62 -0.16 -1.16 16 19 C -0.12 -1.42 4.86 -26.73 -0.13 -1.55 16 20 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 21 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 22 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 23 C -0.11 -1.23 4.85 -26.73 -0.13 -1.36 16 24 H 0.07 1.18 7.75 -51.93 -0.40 0.78 16 25 H 0.04 0.53 6.43 -51.93 -0.33 0.19 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 28 H 0.03 0.48 5.09 -51.93 -0.26 0.22 16 29 H 0.04 0.74 6.37 -51.93 -0.33 0.41 16 30 H 0.07 1.49 6.76 -51.93 -0.35 1.14 16 31 H 0.01 0.27 6.46 -51.93 -0.34 -0.06 16 32 H 0.00 0.11 6.91 -51.93 -0.36 -0.24 16 33 H 0.03 0.73 6.42 -51.93 -0.33 0.40 16 34 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.90 6.32 -51.93 -0.33 0.57 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -27.70 332.17 -9.42 -37.11 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.58 Total: -1.12 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -0.47 Total: -20.00 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.35 Total: -37.51 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.70 -9.42 -37.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336653780.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.648 kcal (2) G-P(sol) polarization free energy of solvation -27.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds