Wall clock time and date at job start Sun Mar 29 2020 23:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 N 1.46901 * 109.46769 * 294.99558 * 4 2 1 6 6 C 1.46893 * 111.00243 * 293.95721 * 5 4 2 7 7 C 1.46906 * 110.99853 * 170.00087 * 5 4 2 8 8 H 1.09000 * 109.47257 * 310.00208 * 7 5 4 9 9 C 1.53006 * 109.46965 * 70.00100 * 7 5 4 10 10 C 1.50693 * 109.47155 * 190.00173 * 7 5 4 11 11 H 1.08002 * 120.00119 * 0.02562 * 10 7 5 12 12 C 1.37881 * 120.00394 * 180.02562 * 10 7 5 13 13 N 1.31519 * 119.99538 * 359.97438 * 12 10 7 14 14 Si 1.86792 * 120.00401 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47089 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47128 * 119.99789 * 14 12 10 17 17 H 1.48499 * 109.47004 * 239.99869 * 14 12 10 18 18 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 19 19 C 1.52991 * 109.47237 * 180.02562 * 18 2 1 20 20 C 1.53002 * 109.47237 * 179.97438 * 19 18 2 21 21 C 1.53000 * 109.46776 * 60.00313 * 20 19 18 22 22 C 1.53005 * 109.47184 * 299.99474 * 21 20 19 23 23 C 1.52997 * 109.46540 * 60.00423 * 22 21 20 24 24 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 25 25 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 26 26 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 28 28 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 29 29 H 1.08999 * 109.47439 * 60.00146 * 6 5 4 30 30 H 1.08997 * 109.47257 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.46808 * 299.99830 * 6 5 4 32 32 H 1.09001 * 109.47141 * 299.99957 * 9 7 5 33 33 H 1.09000 * 109.47044 * 59.99978 * 9 7 5 34 34 H 1.09002 * 109.46733 * 180.02562 * 9 7 5 35 35 H 0.96996 * 120.00250 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47312 * 300.00535 * 18 2 1 37 37 H 1.09000 * 109.47256 * 300.00385 * 19 18 2 38 38 H 1.09004 * 109.47022 * 60.00184 * 19 18 2 39 39 H 1.09000 * 109.47312 * 300.00351 * 20 19 18 40 40 H 1.09007 * 109.47258 * 179.97438 * 20 19 18 41 41 H 1.09001 * 109.46952 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47630 * 60.00218 * 21 20 19 43 43 H 1.08990 * 109.47401 * 300.00831 * 22 21 20 44 44 H 1.08996 * 109.47355 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47181 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.47615 * 60.00286 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6514 0.0375 2.4456 6 6 2.3341 1.3374 2.4893 7 6 1.9124 -0.7356 3.6672 8 1 1.4856 -1.7333 3.5639 9 6 3.4224 -0.8472 3.8872 10 6 1.2830 -0.0396 4.8462 11 1 0.7427 0.8844 4.7025 12 6 1.3968 -0.5824 6.1086 13 7 2.0543 -1.7079 6.2835 14 14 0.6172 0.2807 7.5703 15 1 -0.0598 1.5197 7.1101 16 1 -0.3777 -0.6210 8.2047 17 1 1.6696 0.6298 8.5580 18 6 2.0401 -0.7214 -1.2492 19 6 3.5700 -0.7219 -1.2489 20 6 4.0800 -1.4439 -2.4978 21 6 3.5705 -0.7228 -3.7473 22 6 2.0405 -0.7223 -3.7477 23 6 1.5306 -0.0004 -2.4989 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2057 29 1 2.0679 1.9176 1.6058 30 1 2.0288 1.8782 3.3851 31 1 3.4126 1.1808 2.5099 32 1 3.8777 -1.3506 3.0344 33 1 3.8492 0.1505 3.9905 34 1 3.6160 -1.4212 4.7934 35 1 2.1341 -2.0901 7.1715 36 1 1.6767 -1.7490 -1.2492 37 1 3.9337 0.3056 -1.2487 38 1 3.9329 -1.2360 -0.3588 39 1 3.7163 -2.4714 -2.4975 40 1 5.1701 -1.4439 -2.4978 41 1 3.9343 -1.2368 -4.6371 42 1 3.9343 0.3047 -3.7477 43 1 1.6768 -1.7497 -3.7474 44 1 1.6775 -0.2082 -4.6377 45 1 0.4405 0.0004 -2.4993 46 1 1.8942 1.0272 -2.4991 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336653780.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:52 Heat of formation + Delta-G solvation = -46.228341 kcal Electronic energy + Delta-G solvation = -20030.243060 eV Core-core repulsion = 17338.738577 eV Total energy + Delta-G solvation = -2691.504483 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.32816 -38.64377 -35.63301 -34.13511 -31.70234 -30.75201 -29.56935 -28.02356 -27.23271 -25.72712 -23.62869 -23.09177 -21.29965 -20.57465 -20.34081 -18.20132 -17.17264 -16.53175 -16.03749 -15.75683 -15.43261 -14.97991 -14.86041 -14.58960 -14.35297 -14.07865 -14.00363 -13.47217 -13.29887 -12.97890 -12.97152 -12.80463 -12.55358 -12.49527 -12.36073 -12.17291 -12.07908 -12.02721 -11.91296 -11.83230 -11.66478 -11.30600 -11.17375 -10.93371 -10.69615 -10.60986 -10.48745 -8.75106 -8.09582 -6.20234 1.41383 1.43174 1.55205 2.43781 3.19364 3.41683 3.80960 3.87519 3.96897 4.06480 4.31661 4.43377 4.48802 4.52899 4.56803 4.66222 4.69468 4.71556 4.75388 4.79440 4.83369 4.84494 4.89253 4.95426 5.05685 5.06819 5.13226 5.19408 5.22368 5.26627 5.31436 5.32081 5.39215 5.41951 5.49994 5.53905 5.55757 5.66642 5.71078 5.74476 5.82065 6.24116 6.53745 6.80605 6.94455 7.49217 8.96823 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.041881 B = 0.004486 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.404922 B = 6239.960057 C = 6557.075026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 H 0.068 0.932 4 C 0.062 3.938 5 N -0.540 5.540 6 C 0.040 3.960 7 C 0.215 3.785 8 H 0.000 1.000 9 C -0.155 4.155 10 C -0.510 4.510 11 H 0.056 0.944 12 C 0.009 3.991 13 N -0.923 5.923 14 Si 0.959 3.041 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C -0.074 4.074 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.110 4.110 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.025 0.975 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.013 0.987 32 H 0.020 0.980 33 H 0.032 0.968 34 H 0.059 0.941 35 H 0.260 0.740 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 3.117 -18.937 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 H 0.086 0.914 4 C -0.066 4.066 5 N -0.263 5.263 6 C -0.108 4.108 7 C 0.107 3.893 8 H 0.018 0.982 9 C -0.215 4.215 10 C -0.549 4.549 11 H 0.074 0.926 12 C -0.189 4.189 13 N -0.563 5.563 14 Si 0.785 3.215 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.093 4.093 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.148 4.148 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.322 3.087 -18.824 19.121 hybrid contribution 0.662 -0.192 1.424 1.582 sum 1.984 2.895 -17.400 17.750 Atomic orbital electron populations 1.21680 0.94790 1.01073 1.01327 1.21114 0.96361 0.99110 0.92565 0.91400 1.22179 0.97083 0.96606 0.90740 1.62194 1.57558 1.04283 1.02241 1.22199 0.95313 0.91881 1.01388 1.19050 0.90987 0.92041 0.87196 0.98187 1.22178 0.99697 0.99370 1.00207 1.21411 1.32862 1.08506 0.92094 0.92589 1.25708 0.95994 0.95713 1.01480 1.70029 1.43056 1.20307 1.22945 0.85484 0.78152 0.78688 0.79159 1.19187 1.20765 1.20696 1.21101 0.95057 0.99206 0.93951 1.21628 0.95409 1.00587 0.97778 1.21528 1.00215 0.99248 0.94535 1.21526 0.95787 1.00670 0.97409 1.21531 0.95621 1.00678 0.97644 1.21594 1.00643 0.99124 0.93427 0.93611 0.91436 0.93935 0.93603 0.95680 0.90963 0.92969 0.96805 0.96092 0.94847 0.92203 0.93069 0.92109 0.92262 0.93424 0.92350 0.91883 0.91289 0.92027 0.92252 0.91059 0.91376 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 8.73 71.98 0.63 -3.08 16 2 C -0.07 -2.06 1.89 -10.79 -0.02 -2.08 16 3 H 0.07 1.92 6.33 -2.39 -0.02 1.90 16 4 C 0.06 2.26 3.70 86.30 0.32 2.58 16 5 N -0.54 -23.31 4.16 -901.46 -3.75 -27.06 16 6 C 0.04 1.58 8.46 127.69 1.08 2.66 16 7 C 0.21 11.18 2.31 44.17 0.10 11.28 16 8 H 0.00 0.01 7.93 -2.39 -0.02 -0.01 16 9 C -0.16 -7.76 8.22 71.98 0.59 -7.17 16 10 C -0.51 -28.62 7.91 25.60 0.20 -28.41 16 11 H 0.06 3.15 7.12 -2.91 -0.02 3.13 16 12 C 0.01 0.51 5.30 84.66 0.45 0.96 16 13 N -0.92 -54.05 11.32 21.45 0.24 -53.80 16 14 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 C -0.07 -1.73 1.77 -10.79 -0.02 -1.75 16 19 C -0.12 -2.68 4.86 30.59 0.15 -2.53 16 20 C -0.12 -2.23 5.92 30.60 0.18 -2.05 16 21 C -0.12 -1.86 5.92 30.60 0.18 -1.68 16 22 C -0.12 -1.89 5.92 30.59 0.18 -1.71 16 23 C -0.11 -2.09 4.85 30.60 0.15 -1.94 16 24 H 0.04 1.51 7.75 -2.39 -0.02 1.49 16 25 H 0.07 1.55 6.43 -2.38 -0.02 1.53 16 26 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 28 H 0.03 0.92 5.09 -2.39 -0.01 0.91 16 29 H 0.07 2.37 6.37 -2.39 -0.02 2.36 16 30 H 0.05 2.21 6.76 -2.39 -0.02 2.19 16 31 H 0.01 0.53 6.46 -2.38 -0.02 0.51 16 32 H 0.02 0.93 6.91 -2.39 -0.02 0.92 16 33 H 0.03 1.60 6.42 -2.39 -0.02 1.59 16 34 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 35 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.26 6.32 -2.38 -0.02 1.25 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.25 6.43 -2.39 -0.02 1.24 16 46 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -59.52 332.17 3.61 -55.91 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.91 Total: 13.44 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 4.17 Total: -34.93 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -3.50 Total: -80.86 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -59.52 3.61 -55.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336653780.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.684 kcal (2) G-P(sol) polarization free energy of solvation -59.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds