Wall clock time and date at job start Sun Mar 29 2020 23:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47360 * 2 1 4 4 C 1.50700 * 109.47099 * 119.99555 * 2 1 3 5 5 H 1.08004 * 119.99534 * 114.52384 * 4 2 1 6 6 C 1.37878 * 120.00180 * 294.53219 * 4 2 1 7 7 N 1.31510 * 119.99760 * 160.59098 * 6 4 2 8 8 Si 1.86796 * 119.99790 * 340.86338 * 6 4 2 9 9 H 1.48503 * 109.47098 * 179.72449 * 8 6 4 10 10 H 1.48500 * 109.47352 * 299.72696 * 8 6 4 11 11 H 1.48505 * 109.47038 * 59.73082 * 8 6 4 12 12 N 1.46904 * 109.47316 * 239.99805 * 2 1 3 13 13 C 1.46904 * 110.99924 * 306.04685 * 12 2 1 14 14 C 1.46902 * 110.99898 * 70.00014 * 12 2 1 15 15 C 1.52998 * 109.46896 * 170.00103 * 14 12 2 16 16 C 1.52999 * 109.46929 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.46929 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47136 * 294.99750 * 17 16 15 19 19 C 1.53007 * 109.47239 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46839 * 60.00466 * 19 18 17 21 21 C 1.53007 * 109.46796 * 300.00115 * 20 19 18 22 22 C 1.52998 * 109.47418 * 60.00165 * 21 20 19 23 23 H 1.09008 * 109.46955 * 65.13628 * 1 2 3 24 24 H 1.08999 * 109.47202 * 185.12903 * 1 2 3 25 25 H 1.08997 * 109.47409 * 305.13470 * 1 2 3 26 26 H 0.96996 * 120.00673 * 2.37574 * 7 6 4 27 27 H 1.08999 * 109.46999 * 60.00038 * 13 12 2 28 28 H 1.09002 * 109.46820 * 179.97438 * 13 12 2 29 29 H 1.08994 * 109.46697 * 300.00039 * 13 12 2 30 30 H 1.09001 * 109.47107 * 289.99958 * 14 12 2 31 31 H 1.09005 * 109.47054 * 50.00236 * 14 12 2 32 32 H 1.09001 * 109.47124 * 299.99845 * 15 14 12 33 33 H 1.08996 * 109.47358 * 60.00096 * 15 14 12 34 34 H 1.08994 * 109.47398 * 300.00162 * 16 15 14 35 35 H 1.09005 * 109.47031 * 60.00127 * 16 15 14 36 36 H 1.08999 * 109.47401 * 54.99894 * 17 16 15 37 37 H 1.08994 * 109.47489 * 300.00065 * 18 17 16 38 38 H 1.09002 * 109.47090 * 60.00697 * 18 17 16 39 39 H 1.08994 * 109.47302 * 300.00959 * 19 18 17 40 40 H 1.09000 * 109.47261 * 179.97438 * 19 18 17 41 41 H 1.08991 * 109.47156 * 179.97438 * 20 19 18 42 42 H 1.08999 * 109.47275 * 59.99664 * 20 19 18 43 43 H 1.08999 * 109.46840 * 299.99815 * 21 20 19 44 44 H 1.09001 * 109.46772 * 180.02562 * 21 20 19 45 45 H 1.08998 * 109.46927 * 179.97438 * 22 21 20 46 46 H 1.08994 * 109.46985 * 59.99764 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5783 -1.6371 1.1339 6 6 1.7947 -0.1771 2.4796 7 7 1.8771 -0.9408 3.5471 8 14 1.3483 1.6282 2.6550 9 1 1.1380 1.9491 4.0896 10 1 2.4506 2.4653 2.1169 11 1 0.1012 1.9055 1.8979 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0356 -1.3078 14 6 1.7530 0.0972 -2.4091 15 6 2.4885 -0.5258 -3.5972 16 6 2.2102 0.2963 -4.8572 17 6 2.9453 -0.3270 -6.0455 18 6 4.4554 -0.2254 -5.8213 19 6 5.1905 -0.8493 -7.0094 20 6 4.8139 -0.1031 -8.2910 21 6 3.3037 -0.2047 -8.5151 22 6 2.5687 0.4192 -7.3271 23 1 -0.3633 0.4321 -0.9325 24 1 -0.3633 -1.0235 0.0919 25 1 -0.3634 0.5914 0.8404 26 1 2.1387 -1.8707 3.4592 27 1 0.3491 -1.9550 -1.3693 28 1 1.8134 -2.5258 -2.2045 29 1 1.7059 -2.6221 -0.4301 30 1 0.6814 0.1052 -2.6088 31 1 2.1026 1.1189 -2.2604 32 1 3.5601 -0.5338 -3.3975 33 1 2.1390 -1.5474 -3.7459 34 1 1.1387 0.3040 -5.0567 35 1 2.5595 1.3182 -4.7088 36 1 2.6616 -1.3752 -6.1390 37 1 4.7392 0.8228 -5.7278 38 1 4.7238 -0.7573 -4.9086 39 1 4.9066 -1.8975 -7.1025 40 1 6.2663 -0.7765 -6.8499 41 1 5.3379 -0.5472 -9.1372 42 1 5.0977 0.9451 -8.1979 43 1 3.0200 -1.2529 -8.6082 44 1 3.0355 0.3265 -9.4284 45 1 1.4929 0.3472 -7.4871 46 1 2.8525 1.4674 -7.2340 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347768852.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:19 Heat of formation + Delta-G solvation = -54.681635 kcal Electronic energy + Delta-G solvation = -19343.855702 eV Core-core repulsion = 16651.984657 eV Total energy + Delta-G solvation = -2691.871045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.89947 -39.06065 -35.60905 -34.40286 -31.94991 -31.56600 -30.13550 -27.52624 -26.95328 -25.33145 -23.58077 -22.55613 -21.34387 -20.85869 -20.50410 -19.39036 -16.94486 -16.48619 -16.35854 -15.80202 -15.34682 -15.23769 -14.96081 -14.84456 -14.68043 -14.38870 -13.81121 -13.69780 -13.39424 -13.20541 -13.07698 -12.88426 -12.72644 -12.55190 -12.31754 -12.10749 -11.96617 -11.91392 -11.77884 -11.65794 -11.57087 -11.33922 -11.25923 -11.02233 -10.81181 -10.70988 -10.32277 -8.94646 -8.71265 -6.29686 1.45008 1.53789 1.72285 2.50408 3.08362 3.27290 3.78848 3.85441 3.91403 4.08746 4.26700 4.29585 4.36141 4.42445 4.50347 4.56261 4.59044 4.63545 4.66029 4.69734 4.72707 4.75849 4.80935 4.84836 4.88123 4.93663 4.97596 5.09135 5.13831 5.18105 5.20912 5.26762 5.30306 5.36524 5.41410 5.44097 5.46706 5.50195 5.60372 5.67574 5.86845 6.07786 6.31587 6.62573 6.76551 7.46574 8.66630 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.040212 B = 0.003712 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.139283 B = 7541.971901 C = 7607.626380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.186 3.814 3 H 0.031 0.969 4 C -0.587 4.587 5 H 0.021 0.979 6 C -0.022 4.022 7 N -0.940 5.940 8 Si 1.083 2.917 9 H -0.290 1.290 10 H -0.266 1.266 11 H -0.243 1.243 12 N -0.546 5.546 13 C 0.042 3.958 14 C 0.052 3.948 15 C -0.105 4.105 16 C -0.106 4.106 17 C -0.081 4.081 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.113 4.113 23 H 0.052 0.948 24 H 0.038 0.962 25 H 0.051 0.949 26 H 0.250 0.750 27 H 0.022 0.978 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 3.972 -25.037 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.078 3.922 3 H 0.048 0.952 4 C -0.625 4.625 5 H 0.039 0.961 6 C -0.220 4.220 7 N -0.576 5.576 8 Si 0.904 3.096 9 H -0.216 1.216 10 H -0.191 1.191 11 H -0.168 1.168 12 N -0.269 5.269 13 C -0.106 4.106 14 C -0.076 4.076 15 C -0.143 4.143 16 C -0.144 4.144 17 C -0.099 4.099 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.150 4.150 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.264 5.062 -23.896 24.459 hybrid contribution -0.211 -1.735 -0.426 1.799 sum 1.053 3.326 -24.322 24.571 Atomic orbital electron populations 1.22686 0.99811 1.00627 1.00416 1.19477 0.90200 0.94066 0.88500 0.95162 1.22125 1.38630 1.09091 0.92698 0.96095 1.27127 0.94166 1.08825 0.91855 1.70998 1.46058 1.07797 1.32773 0.83605 0.78778 0.70906 0.76289 1.21569 1.19104 1.16789 1.62127 1.59158 1.03165 1.02484 1.22161 0.96519 0.91186 1.00725 1.22211 0.97895 0.97332 0.90185 1.21556 1.00409 0.99176 0.93164 1.21548 1.00379 0.99151 0.93319 1.21101 0.94911 0.99635 0.94283 1.21629 0.94928 1.00892 0.97989 1.21541 0.99745 0.99574 0.94881 1.21536 0.96175 1.00539 0.97324 1.21531 0.95129 1.01006 0.97920 1.21571 1.00019 0.99504 0.93913 0.92936 0.94255 0.93036 0.94076 0.95960 0.90719 0.94517 0.95158 0.91763 0.92129 0.92369 0.91737 0.91923 0.91774 0.92272 0.92774 0.92299 0.92017 0.91508 0.92113 0.92203 0.91313 0.91766 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.62 8.03 71.98 0.58 -7.04 16 2 C 0.19 8.89 1.89 44.17 0.08 8.98 16 3 H 0.03 1.45 6.57 -2.38 -0.02 1.44 16 4 C -0.59 -34.14 8.32 25.60 0.21 -33.92 16 5 H 0.02 1.35 7.15 -2.91 -0.02 1.33 16 6 C -0.02 -1.30 5.33 84.66 0.45 -0.85 16 7 N -0.94 -59.96 13.70 21.45 0.29 -59.67 16 8 Si 1.08 50.37 26.47 68.60 1.82 52.19 16 9 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.24 -9.99 5.56 99.48 0.55 -9.44 16 12 N -0.55 -23.00 4.70 -901.44 -4.24 -27.24 16 13 C 0.04 1.68 8.62 127.69 1.10 2.78 16 14 C 0.05 1.70 4.53 86.30 0.39 2.09 16 15 C -0.11 -2.80 4.90 30.59 0.15 -2.65 16 16 C -0.11 -2.20 4.68 30.59 0.14 -2.06 16 17 C -0.08 -1.47 2.19 -10.79 -0.02 -1.50 16 18 C -0.12 -2.21 4.96 30.60 0.15 -2.06 16 19 C -0.12 -1.95 5.92 30.60 0.18 -1.76 16 20 C -0.12 -1.65 5.92 30.60 0.18 -1.47 16 21 C -0.12 -1.62 5.92 30.60 0.18 -1.44 16 22 C -0.11 -1.73 5.21 30.60 0.16 -1.57 16 23 H 0.05 1.93 6.70 -2.38 -0.02 1.91 16 24 H 0.04 1.75 6.64 -2.39 -0.02 1.73 16 25 H 0.05 2.25 4.92 -2.39 -0.01 2.24 16 26 H 0.25 16.26 8.72 -92.71 -0.81 15.45 16 27 H 0.02 0.84 6.33 -2.39 -0.02 0.82 16 28 H 0.07 2.49 6.30 -2.39 -0.02 2.47 16 29 H 0.04 1.67 6.75 -2.39 -0.02 1.66 16 30 H 0.03 0.95 6.95 -2.39 -0.02 0.94 16 31 H 0.06 2.10 7.93 -2.38 -0.02 2.08 16 32 H 0.06 1.74 6.57 -2.39 -0.02 1.73 16 33 H 0.06 1.54 6.47 -2.39 -0.02 1.53 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.17 6.57 -2.39 -0.02 1.15 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -64.63 333.34 2.53 -62.10 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.72 Total: 15.10 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 3.94 Total: -42.48 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -3.95 Total: -86.91 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 1.82 Total: 52.19 kcal Total: -64.63 2.53 -62.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347768852.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.422 kcal (2) G-P(sol) polarization free energy of solvation -64.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds