Wall clock time and date at job start Sun Mar 29 2020 23:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21678 * 120.00123 * 359.97438 * 11 10 9 13 13 C 1.46736 * 119.99629 * 179.97438 * 11 10 9 14 14 C 1.34871 * 125.05183 * 179.97438 * 13 11 10 15 15 C 1.38941 * 113.65433 * 180.02562 * 14 13 11 16 16 C 1.47336 * 122.96317 * 180.02562 * 15 14 13 17 17 N 1.34776 * 119.99652 * 179.97438 * 16 15 14 18 18 O 1.21616 * 119.99940 * 359.97438 * 16 15 14 19 19 C 1.36660 * 114.07475 * 359.97438 * 15 14 13 20 20 S 1.70600 * 110.53193 * 359.73233 * 19 15 14 21 21 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 23 23 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 24 24 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 25 25 H 1.08001 * 123.17596 * 0.02562 * 14 13 11 26 26 H 0.96993 * 120.00892 * 0.02562 * 17 16 15 27 27 H 0.97001 * 119.99535 * 179.97438 * 17 16 15 28 28 H 1.08002 * 124.73346 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5575 -5.1057 0.0020 13 6 2.7073 -5.9986 0.0005 14 6 2.3715 -7.3049 0.0014 15 6 3.4653 -8.1617 0.0012 16 6 3.3341 -9.6292 0.0015 17 7 4.4367 -10.4042 0.0007 18 8 2.2309 -10.1410 0.0025 19 6 4.6736 -7.5232 -0.0006 20 16 4.4562 -5.8311 -0.0093 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 3.1567 -3.4354 0.0009 25 1 1.3489 -7.6522 0.0023 26 1 5.3166 -9.9961 0.0003 27 1 4.3503 -11.3704 0.0013 28 1 5.6323 -8.0204 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358525895.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:59 Heat of formation + Delta-G solvation = -81.748787 kcal Electronic energy + Delta-G solvation = -15405.953498 eV Core-core repulsion = 12546.903315 eV Total energy + Delta-G solvation = -2859.050183 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.051 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.10135 -40.45636 -37.92350 -36.23925 -34.79841 -34.43381 -31.31595 -29.25035 -26.62406 -25.34585 -23.44435 -21.63758 -20.27127 -19.99538 -18.55986 -18.09890 -17.76314 -17.08099 -16.56313 -16.41513 -16.17835 -15.85783 -15.29050 -14.62410 -14.26510 -14.13762 -14.06740 -13.77239 -13.60215 -12.95433 -12.67076 -12.35531 -12.24200 -11.53919 -11.29265 -11.11756 -10.81618 -10.73888 -10.22494 -9.89780 -9.65449 -8.29176 -6.46926 -0.68490 0.29378 0.55546 0.68578 1.44851 1.49434 1.57617 1.97214 2.18848 2.34486 2.42958 2.63272 3.05800 3.75653 3.95041 4.05681 4.11248 4.60563 4.92071 4.97447 5.11650 5.18549 5.36320 5.59785 5.80112 5.87380 6.42688 6.59423 6.71662 7.15764 7.30199 7.30722 8.82804 Molecular weight = 254.05amu Principal moments of inertia in cm(-1) A = 0.050172 B = 0.004249 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.951179 B = 6588.511498 C = 7131.313473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.558 4.558 8 H 0.088 0.912 9 C 0.265 3.735 10 N -0.698 5.698 11 C 0.568 3.432 12 O -0.593 6.593 13 C -0.300 4.300 14 C -0.027 4.027 15 C -0.189 4.189 16 C 0.583 3.417 17 N -0.821 5.821 18 O -0.594 6.594 19 C -0.167 4.167 20 S 0.332 5.668 21 H 0.269 0.731 22 H -0.008 1.008 23 H -0.008 1.008 24 H 0.406 0.594 25 H 0.128 0.872 26 H 0.420 0.580 27 H 0.415 0.585 28 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.291 -15.205 -0.024 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.811 3.189 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.596 4.596 8 H 0.106 0.894 9 C 0.143 3.857 10 N -0.347 5.347 11 C 0.355 3.645 12 O -0.476 6.476 13 C -0.420 4.420 14 C -0.060 4.060 15 C -0.206 4.206 16 C 0.367 3.633 17 N -0.386 5.386 18 O -0.475 6.475 19 C -0.306 4.306 20 S 0.600 5.400 21 H 0.078 0.922 22 H 0.010 0.990 23 H 0.010 0.990 24 H 0.242 0.758 25 H 0.146 0.854 26 H 0.252 0.748 27 H 0.248 0.752 28 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 19.554 -14.102 -0.036 24.108 hybrid contribution -0.967 -0.576 0.012 1.126 sum 18.587 -14.678 -0.024 23.684 Atomic orbital electron populations 1.70140 1.08355 1.28739 1.49604 1.26108 0.95805 1.04031 0.93701 0.85159 0.77870 0.76267 0.79641 1.18451 1.21245 1.18440 1.21547 0.94411 0.90183 1.53433 0.89431 1.18675 0.88574 0.83868 0.94615 1.46062 1.11168 1.05045 1.72405 1.17663 0.87455 0.82975 0.76436 1.90765 1.18174 1.85318 1.53312 1.24065 1.00656 0.96601 1.20668 1.20272 1.00844 0.90667 0.94196 1.18822 0.92667 0.94280 1.14858 1.17698 0.84532 0.86203 0.74853 1.43381 1.08261 1.10870 1.76040 1.90842 1.28286 1.75879 1.52523 1.26717 1.02985 1.00162 1.00780 1.82865 0.93802 1.00682 1.62679 0.92193 0.98970 0.98962 0.75821 0.85427 0.74771 0.75209 0.74940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.00 13.29 21.45 0.28 -55.72 15 2 C 0.00 0.19 5.46 84.65 0.46 0.65 15 3 Si 0.99 41.52 29.54 68.60 2.03 43.55 15 4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 15 5 H -0.29 -12.06 7.11 99.48 0.71 -11.35 15 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 7 C -0.56 -30.07 9.28 25.60 0.24 -29.83 15 8 H 0.09 4.18 7.60 -2.91 -0.02 4.16 15 9 C 0.26 14.74 5.43 85.63 0.46 15.20 15 10 N -0.70 -30.62 5.54 -470.75 -2.61 -33.23 15 11 C 0.57 25.03 7.78 86.46 0.67 25.70 15 12 O -0.59 -32.21 16.79 -4.28 -0.07 -32.28 15 13 C -0.30 -9.65 6.37 23.72 0.15 -9.49 15 14 C -0.03 -0.87 9.47 21.66 0.21 -0.66 15 15 C -0.19 -4.18 5.82 -21.09 -0.12 -4.31 15 16 C 0.58 13.02 8.06 86.64 0.70 13.71 15 17 N -0.82 -7.86 8.84 -175.95 -1.56 -9.41 15 18 O -0.59 -19.93 17.52 -4.08 -0.07 -20.00 15 19 C -0.17 -2.05 10.41 67.45 0.70 -1.34 15 20 S 0.33 5.83 22.09 -56.49 -1.25 4.59 15 21 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 22 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 15 23 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 15 24 H 0.41 14.41 7.40 -92.71 -0.69 13.72 15 25 H 0.13 4.85 7.95 -2.91 -0.02 4.83 15 26 H 0.42 0.44 7.29 -92.71 -0.68 -0.24 15 27 H 0.42 3.04 8.93 -92.71 -0.83 2.22 15 28 H 0.23 0.00 6.99 -2.91 -0.02 -0.02 15 Total: -1.00 -84.55 273.76 -0.72 -85.26 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -0.94 Total: 7.61 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 3.47 Total: 9.62 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -3.88 Total: -98.36 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.14 Total: -52.27 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 5.83 SS G_CDS: -1.25 Total: 4.59 kcal Total: -84.55 -0.72 -85.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358525895.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.516 kcal (2) G-P(sol) polarization free energy of solvation -84.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds