Wall clock time and date at job start Sun Mar 29 2020 23:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47071 * 2 1 4 4 C 1.52999 * 109.47308 * 120.00002 * 2 1 3 5 5 H 1.09007 * 108.74194 * 306.90671 * 4 2 1 6 6 C 1.54165 * 108.85524 * 188.44820 * 4 2 1 7 7 C 1.53823 * 111.96946 * 197.68139 * 6 4 2 8 8 C 1.50811 * 111.62338 * 319.04332 * 7 6 4 9 9 N 1.47637 * 108.05622 * 95.05629 * 8 7 6 10 10 C 1.46904 * 110.99989 * 150.34917 * 9 8 7 11 11 H 1.08996 * 109.46537 * 176.56157 * 10 9 8 12 12 C 1.53004 * 109.47106 * 56.56070 * 10 9 8 13 13 C 1.52999 * 109.47031 * 296.56168 * 10 9 8 14 14 C 1.50700 * 109.46816 * 297.02512 * 13 10 9 15 15 H 1.08000 * 120.00594 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99914 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99651 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00284 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46835 * 90.00309 * 18 16 14 20 20 H 1.48494 * 109.47510 * 210.00362 * 18 16 14 21 21 H 1.48501 * 109.47334 * 330.00497 * 18 16 14 22 22 C 1.39774 * 114.75598 * 277.19830 * 9 8 7 23 23 C 1.50761 * 108.85501 * 65.35813 * 4 2 1 24 24 H 1.09004 * 109.46424 * 294.41270 * 1 2 3 25 25 H 1.08993 * 109.47162 * 54.41431 * 1 2 3 26 26 H 1.08995 * 109.47006 * 174.41894 * 1 2 3 27 27 H 1.09000 * 109.46622 * 239.99966 * 2 1 3 28 28 H 1.08991 * 109.47116 * 59.99936 * 3 2 1 29 29 H 1.09001 * 109.47021 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46877 * 299.99890 * 3 2 1 31 31 H 1.09005 * 108.98209 * 318.31843 * 6 4 2 32 32 H 1.08995 * 108.98515 * 77.12036 * 6 4 2 33 33 H 1.09008 * 109.04756 * 79.59374 * 7 6 4 34 34 H 1.09002 * 109.05170 * 198.56153 * 7 6 4 35 35 H 1.09006 * 109.74586 * 335.41802 * 8 7 6 36 36 H 1.08999 * 109.74619 * 214.69639 * 8 7 6 37 37 H 1.08995 * 109.47273 * 300.00002 * 12 10 9 38 38 H 1.09003 * 109.46875 * 179.97438 * 12 10 9 39 39 H 1.09004 * 109.46822 * 60.00323 * 12 10 9 40 40 H 1.08995 * 109.47438 * 57.02602 * 13 10 9 41 41 H 1.08997 * 109.46994 * 177.02622 * 13 10 9 42 42 H 0.97004 * 120.00119 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.02122 * 182.86245 * 22 9 8 44 44 H 1.09004 * 109.02648 * 301.76515 * 22 9 8 45 45 H 1.08999 * 109.54093 * 93.95871 * 23 4 2 46 46 H 1.09003 * 109.61626 * 333.73383 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5724 -0.2748 2.1269 6 6 3.5667 -0.5299 1.3466 7 6 4.2158 -1.5537 2.2936 8 6 3.3826 -1.7718 3.5316 9 7 2.5252 -2.9519 3.3041 10 6 2.2367 -3.6444 4.5671 11 1 1.5544 -4.4734 4.3793 12 6 1.5912 -2.6652 5.5497 13 6 3.5394 -4.1811 5.1636 14 6 4.1376 -5.2001 4.2284 15 1 3.6389 -5.4406 3.3011 16 6 5.3224 -5.8247 4.5560 17 7 5.9300 -5.5315 5.6849 18 14 6.0637 -7.0884 3.3971 19 1 6.9744 -6.4089 2.4410 20 1 6.8281 -8.0911 4.1815 21 1 4.9778 -7.7697 2.6475 22 6 1.3489 -2.6929 2.5948 23 6 1.6417 -2.1731 1.1704 24 1 -0.3632 0.4248 0.9359 25 1 -0.3633 0.5980 -0.8357 26 1 -0.3633 -1.0228 -0.0999 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 4.0019 -0.6402 0.3533 32 1 3.7755 0.4743 1.7152 33 1 4.3282 -2.5025 1.7687 34 1 5.2007 -1.1914 2.5881 35 1 2.7613 -0.8954 3.7164 36 1 4.0339 -1.9493 4.3873 37 1 2.2735 -1.8362 5.7375 38 1 1.3767 -3.1791 6.4867 39 1 0.6631 -2.2828 5.1247 40 1 4.2414 -3.3589 5.3023 41 1 3.3327 -4.6486 6.1263 42 1 6.7633 -5.9712 5.9156 43 1 0.7666 -3.6116 2.5250 44 1 0.7674 -1.9439 3.1325 45 1 2.4549 -2.7510 0.7312 46 1 0.7482 -2.2744 0.5543 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411285933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:31 Heat of formation + Delta-G solvation = -38.395087 kcal Electronic energy + Delta-G solvation = -20442.554603 eV Core-core repulsion = 17751.389795 eV Total energy + Delta-G solvation = -2691.164808 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.93549 -38.21599 -35.23896 -34.18288 -33.00864 -30.97232 -29.19742 -28.38260 -26.30293 -25.93473 -24.99305 -22.31084 -21.64222 -20.59636 -19.73166 -18.30399 -17.27413 -16.54423 -16.15843 -15.70593 -15.68174 -15.36795 -14.82382 -14.67151 -14.05678 -13.98229 -13.84850 -13.56599 -13.28977 -13.08809 -12.97462 -12.85082 -12.66228 -12.57371 -12.36882 -12.26546 -12.17513 -12.13121 -11.78843 -11.57784 -11.44062 -11.10025 -10.99927 -10.95601 -10.93180 -10.78586 -10.43057 -8.70151 -8.07300 -6.11051 1.42064 1.42722 1.53450 2.48806 3.19270 3.31257 3.78369 3.92541 3.95780 4.15982 4.28807 4.31171 4.38120 4.41964 4.49779 4.54595 4.58973 4.68291 4.72794 4.80014 4.83004 4.86678 4.93390 5.01205 5.02490 5.08504 5.11337 5.16782 5.21543 5.22584 5.28476 5.33155 5.41523 5.45508 5.49817 5.54064 5.57697 5.65044 5.74875 5.76948 5.94372 6.39316 6.60028 6.93384 7.02661 7.54331 9.04825 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.005773 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.008676 B = 4849.257799 C = 5225.302812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.074 4.074 5 H 0.057 0.943 6 C -0.101 4.101 7 C -0.114 4.114 8 C 0.080 3.920 9 N -0.545 5.545 10 C 0.098 3.902 11 H 0.060 0.940 12 C -0.170 4.170 13 C 0.035 3.965 14 C -0.492 4.492 15 H 0.056 0.944 16 C -0.004 4.004 17 N -0.941 5.941 18 Si 0.953 3.047 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.267 1.267 22 C 0.078 3.922 23 C -0.109 4.109 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.062 0.938 40 H -0.001 1.001 41 H -0.011 1.011 42 H 0.257 0.743 43 H 0.057 0.943 44 H 0.017 0.983 45 H 0.055 0.945 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 12.859 -10.788 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.093 4.093 5 H 0.075 0.925 6 C -0.138 4.138 7 C -0.152 4.152 8 C -0.046 4.046 9 N -0.268 5.268 10 C -0.010 4.010 11 H 0.079 0.921 12 C -0.229 4.229 13 C -0.002 4.002 14 C -0.530 4.530 15 H 0.074 0.926 16 C -0.200 4.200 17 N -0.583 5.583 18 Si 0.779 3.221 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.192 1.192 22 C -0.051 4.051 23 C -0.147 4.147 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.017 0.983 41 H 0.007 0.993 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.035 0.965 45 H 0.074 0.926 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.866 12.532 -10.993 19.371 hybrid contribution 0.424 -0.456 0.500 0.798 sum -9.443 12.076 -10.493 18.577 Atomic orbital electron populations 1.21886 0.94797 1.01876 1.01757 1.21200 0.96036 0.96270 0.97328 1.21882 1.01231 0.95580 1.01711 1.21018 0.95048 0.95178 0.98036 0.92452 1.21946 0.94910 0.98137 0.98818 1.21357 0.98010 0.99584 0.96259 1.21592 0.95213 0.90099 0.97743 1.58714 1.20409 1.26963 1.20733 1.21592 0.96678 0.94793 0.87943 0.92127 1.22359 1.00438 0.99962 1.00124 1.19095 0.92227 0.94723 0.94122 1.21442 1.06045 1.20743 1.04807 0.92564 1.25804 0.98008 0.99425 0.96722 1.70094 1.18388 1.45089 1.24768 0.85623 0.78471 0.79016 0.78943 1.20462 1.21291 1.19165 1.20959 0.90534 0.99002 0.94606 1.21589 1.01714 0.95765 0.95608 0.93066 0.91986 0.92439 0.91407 0.92994 0.92504 0.92164 0.91896 0.91643 0.92831 0.92995 0.94107 0.93206 0.93277 0.92591 0.91886 0.98307 0.99268 0.93389 0.92431 0.96537 0.92622 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.89 71.98 0.64 -1.74 16 2 C -0.09 -1.64 2.36 -10.79 -0.03 -1.66 16 3 C -0.15 -2.40 8.66 71.98 0.62 -1.78 16 4 C -0.07 -1.70 1.32 -11.13 -0.01 -1.71 16 5 H 0.06 1.39 6.54 -2.38 -0.02 1.37 16 6 C -0.10 -2.49 4.05 31.27 0.13 -2.37 16 7 C -0.11 -3.75 5.41 30.16 0.16 -3.59 16 8 C 0.08 2.88 3.77 85.45 0.32 3.20 16 9 N -0.54 -20.50 3.54 -887.85 -3.14 -23.64 16 10 C 0.10 4.04 2.22 44.92 0.10 4.14 16 11 H 0.06 2.55 7.79 -2.39 -0.02 2.53 16 12 C -0.17 -5.84 8.70 71.98 0.63 -5.21 16 13 C 0.04 1.87 4.34 29.85 0.13 1.99 16 14 C -0.49 -28.14 8.79 25.60 0.22 -27.92 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 16 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 17 N -0.94 -58.25 13.29 21.45 0.28 -57.96 16 18 Si 0.95 46.03 29.54 68.60 2.03 48.05 16 19 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 C 0.08 2.40 4.65 88.07 0.41 2.81 16 23 C -0.11 -2.82 5.02 30.35 0.15 -2.67 16 24 H 0.05 0.85 8.12 -2.38 -0.02 0.83 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.94 6.41 -2.39 -0.02 0.92 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.95 6.61 -2.39 -0.02 0.93 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 1.47 7.94 -2.38 -0.02 1.45 16 32 H 0.06 1.47 7.36 -2.39 -0.02 1.45 16 33 H 0.05 2.03 7.26 -2.38 -0.02 2.02 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.31 6.56 -2.38 -0.02 1.29 16 36 H 0.05 2.11 5.43 -2.39 -0.01 2.09 16 37 H 0.05 1.69 6.90 -2.39 -0.02 1.67 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.86 6.92 -2.39 -0.02 1.84 16 40 H 0.00 -0.07 6.03 -2.39 -0.01 -0.08 16 41 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 42 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.06 1.79 7.77 -2.39 -0.02 1.77 16 44 H 0.02 0.48 6.32 -2.38 -0.02 0.47 16 45 H 0.05 1.67 7.11 -2.39 -0.02 1.65 16 46 H 0.08 1.83 5.84 -2.39 -0.01 1.81 16 Total: -1.00 -62.69 331.27 4.02 -58.67 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.91 Total: 11.14 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 3.94 Total: -36.26 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.86 Total: -81.60 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -62.69 4.02 -58.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411285933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.277 kcal (2) G-P(sol) polarization free energy of solvation -62.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds