Wall clock time and date at job start Sun Mar 29 2020 23:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47082 * 2 1 4 4 C 1.52999 * 109.46782 * 119.99192 * 2 1 3 5 5 C 1.50699 * 109.47125 * 63.47464 * 4 2 1 6 6 H 1.08001 * 119.99811 * 5.11109 * 5 4 2 7 7 C 1.37883 * 120.00408 * 185.11094 * 5 4 2 8 8 N 1.31512 * 119.99441 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00347 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47134 * 59.99659 * 9 7 5 11 11 H 1.48497 * 109.47109 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46813 * 299.99883 * 9 7 5 13 13 N 1.46901 * 109.47390 * 239.99250 * 2 1 3 14 14 C 1.46884 * 110.97106 * 182.71535 * 13 2 1 15 15 C 1.52673 * 109.84456 * 171.42752 * 14 13 2 16 16 C 1.53183 * 109.60533 * 288.15785 * 15 14 13 17 17 C 1.54229 * 107.92885 * 171.16338 * 15 14 13 18 18 C 1.51981 * 112.21393 * 51.91577 * 15 14 13 19 19 C 1.52059 * 115.19660 * 318.89325 * 18 15 14 20 20 C 1.53069 * 111.09865 * 279.41104 * 19 18 15 21 21 C 1.54141 * 108.39949 * 161.07048 * 19 18 15 22 22 C 1.47033 * 110.89435 * 61.05630 * 13 2 1 23 23 H 1.08998 * 109.47229 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47278 * 60.00590 * 1 2 3 25 25 H 1.09004 * 109.47499 * 300.00442 * 1 2 3 26 26 H 1.09006 * 109.47004 * 183.46759 * 4 2 1 27 27 H 1.08998 * 109.47846 * 303.47420 * 4 2 1 28 28 H 0.97001 * 119.99560 * 179.97438 * 8 7 5 29 29 H 1.09089 * 109.31138 * 291.69839 * 14 13 2 30 30 H 1.09092 * 109.30459 * 51.13983 * 14 13 2 31 31 H 1.08997 * 109.46731 * 184.49425 * 16 15 14 32 32 H 1.09003 * 109.46868 * 304.48960 * 16 15 14 33 33 H 1.09001 * 109.47234 * 64.48886 * 16 15 14 34 34 H 1.08997 * 109.47535 * 298.29575 * 17 15 14 35 35 H 1.08998 * 109.47314 * 58.30165 * 17 15 14 36 36 H 1.09001 * 109.46957 * 178.29633 * 17 15 14 37 37 H 1.10108 * 108.76346 * 196.58622 * 18 15 14 38 38 H 1.10122 * 108.73537 * 81.13567 * 18 15 14 39 39 H 1.08999 * 109.46837 * 183.95079 * 20 19 18 40 40 H 1.08997 * 109.47474 * 303.94973 * 20 19 18 41 41 H 1.08999 * 109.47015 * 63.95391 * 20 19 18 42 42 H 1.08998 * 109.47247 * 298.83335 * 21 19 18 43 43 H 1.08995 * 109.47376 * 58.83453 * 21 19 18 44 44 H 1.08997 * 109.46852 * 178.83785 * 21 19 18 45 45 H 1.08985 * 109.35751 * 309.73677 * 22 13 2 46 46 H 1.08969 * 109.39645 * 69.69693 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6091 -2.1646 1.2072 6 1 1.1015 -2.5514 0.3359 7 6 1.8628 -2.9915 2.2810 8 7 2.4814 -2.5205 3.3418 9 14 1.3282 -4.7805 2.2291 10 1 1.9896 -5.4619 1.0874 11 1 1.7149 -5.4497 3.4971 12 1 -0.1457 -4.8520 2.0617 13 7 2.0197 -0.6926 -1.1993 14 6 3.4866 -0.7684 -1.2005 15 6 3.9581 -1.6709 -2.3381 16 6 3.6342 -3.1304 -2.0042 17 6 5.4916 -1.5434 -2.4408 18 6 3.3555 -1.2724 -3.6752 19 6 1.8860 -0.8838 -3.6329 20 6 0.9882 -2.1235 -3.6242 21 6 1.5603 -0.0733 -4.9029 22 6 1.5678 -0.0098 -2.4205 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 0.5139 0.8900 26 1 3.1282 -0.6676 1.2810 27 1 1.6267 -0.2444 2.1382 28 1 2.6596 -3.1021 4.0973 29 1 3.8994 0.2327 -1.3329 30 1 3.8276 -1.1733 -0.2467 31 1 4.0421 -3.7795 -2.7790 32 1 4.0770 -3.3900 -1.0425 33 1 2.5531 -3.2602 -1.9533 34 1 5.7556 -0.5127 -2.6774 35 1 5.9442 -1.8254 -1.4902 36 1 5.8591 -2.2023 -3.2276 37 1 3.4801 -2.1069 -4.3826 38 1 3.9319 -0.4286 -4.0855 39 1 -0.0566 -1.8157 -3.6646 40 1 1.2177 -2.7444 -4.4901 41 1 1.1641 -2.6931 -2.7117 42 1 2.1671 0.8320 -4.9218 43 1 1.7791 -0.6757 -5.7845 44 1 0.5044 0.1972 -4.9005 45 1 0.4927 0.1595 -2.3629 46 1 2.0828 0.9461 -2.5123 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411538962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:40 Heat of formation + Delta-G solvation = -23.058024 kcal Electronic energy + Delta-G solvation = -21167.748692 eV Core-core repulsion = 18477.248950 eV Total energy + Delta-G solvation = -2690.499743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.68950 -35.85837 -34.59987 -32.54773 -30.29068 -27.49075 -27.38974 -26.35974 -26.17714 -25.42411 -23.84294 -22.68443 -19.40734 -18.87439 -17.59738 -16.25164 -15.30687 -14.76394 -14.38705 -14.22021 -14.01923 -13.85373 -13.26277 -13.03974 -12.89491 -12.26609 -12.17075 -11.92576 -11.78300 -11.72169 -11.46298 -11.32339 -11.24898 -10.98294 -10.89467 -10.84778 -10.71546 -10.40359 -10.33663 -10.27241 -10.04666 -9.87966 -9.67092 -9.48850 -9.02496 -8.88512 -8.20832 -7.37927 -5.84633 -3.81131 3.42462 3.46673 3.49943 4.56732 4.62084 4.90022 5.12589 5.16939 5.35952 5.50954 5.51859 5.56723 5.73850 5.80708 5.84090 5.96417 5.97763 6.00305 6.02148 6.07881 6.12801 6.13573 6.21790 6.25180 6.31517 6.33633 6.35254 6.44601 6.51928 6.57677 6.65043 6.68103 6.72948 6.82912 6.96346 7.00401 7.21114 7.22407 7.64020 7.74072 7.99635 8.08872 8.19034 8.64968 9.26658 9.80271 11.27686 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.020664 B = 0.008058 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.675496 B = 3473.848958 C = 3779.662752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.086 3.914 3 H 0.007 0.993 4 C 0.026 3.974 5 C -0.479 4.479 6 H 0.067 0.933 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.293 1.293 12 H -0.280 1.280 13 N -0.496 5.496 14 C 0.065 3.935 15 C -0.051 4.051 16 C -0.132 4.132 17 C -0.143 4.143 18 C -0.087 4.087 19 C -0.052 4.052 20 C -0.136 4.136 21 C -0.143 4.143 22 C 0.055 3.945 23 H 0.072 0.928 24 H 0.031 0.969 25 H 0.047 0.953 26 H 0.012 0.988 27 H 0.021 0.979 28 H 0.256 0.744 29 H 0.013 0.987 30 H 0.095 0.905 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.806 3.632 -14.013 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.022 4.022 3 H 0.025 0.975 4 C -0.011 4.011 5 C -0.518 4.518 6 H 0.086 0.914 7 C -0.149 4.149 8 N -0.547 5.547 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.219 1.219 12 H -0.206 1.206 13 N -0.219 5.219 14 C -0.063 4.063 15 C -0.052 4.052 16 C -0.189 4.189 17 C -0.201 4.201 18 C -0.125 4.125 19 C -0.052 4.052 20 C -0.193 4.193 21 C -0.201 4.201 22 C -0.074 4.074 23 H 0.091 0.909 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.030 0.970 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 0.667 3.089 -13.825 14.182 hybrid contribution 0.167 -0.099 0.051 0.201 sum 0.834 2.990 -13.774 14.119 Atomic orbital electron populations 1.21763 0.95506 1.02681 0.98840 1.21761 0.94965 0.93312 0.92147 0.97472 1.19252 0.95779 0.95888 0.90227 1.21127 1.35656 0.94112 1.00894 0.91441 1.25012 0.96004 0.98076 0.95853 1.69959 1.43098 1.35589 1.06069 0.86773 0.78951 0.86054 0.76876 1.20323 1.21870 1.20580 1.62506 1.08918 1.50063 1.00441 1.22162 0.88355 0.96252 0.99492 1.20380 0.93738 0.96812 0.94229 1.21898 1.03286 0.93446 1.00231 1.22202 0.95800 1.00603 1.01525 1.21358 0.94374 1.00257 0.96508 1.20393 0.95066 0.95845 0.93931 1.21912 0.98040 0.97075 1.02240 1.22186 1.01026 0.99462 0.97421 1.22267 1.00311 0.93984 0.90796 0.90911 0.95024 0.93383 0.96967 0.96090 0.93408 0.96900 0.88701 0.94673 0.92485 0.90847 0.93511 0.92478 0.93199 0.92892 0.93475 0.93554 0.94056 0.90232 0.93323 0.93040 0.92916 0.90949 0.96287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.81 37.16 0.33 -2.14 16 2 C 0.09 1.76 2.29 -67.71 -0.16 1.60 16 3 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 4 C 0.03 0.64 4.21 -27.88 -0.12 0.52 16 5 C -0.48 -12.82 7.86 -34.44 -0.27 -13.09 16 6 H 0.07 1.80 6.88 -52.49 -0.36 1.44 16 7 C 0.05 1.39 5.46 -17.82 -0.10 1.29 16 8 N -0.91 -26.99 13.29 55.43 0.74 -26.25 16 9 Si 0.88 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.50 -9.25 3.38 -226.82 -0.77 -10.01 16 14 C 0.07 1.20 3.80 -4.00 -0.02 1.18 16 15 C -0.05 -0.80 0.76 -154.46 -0.12 -0.92 16 16 C -0.13 -2.23 8.11 37.25 0.30 -1.93 16 17 C -0.14 -1.99 8.13 37.80 0.31 -1.68 16 18 C -0.09 -1.22 3.62 -27.73 -0.10 -1.32 16 19 C -0.05 -0.72 0.75 -154.46 -0.12 -0.84 16 20 C -0.14 -1.93 8.06 37.19 0.30 -1.63 16 21 C -0.14 -1.66 8.16 37.75 0.31 -1.35 16 22 C 0.05 0.87 3.90 -3.85 -0.02 0.86 16 23 H 0.07 1.50 6.95 -51.93 -0.36 1.14 16 24 H 0.03 0.52 6.22 -51.93 -0.32 0.19 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.01 0.32 6.37 -51.93 -0.33 -0.01 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.01 0.23 7.93 -51.88 -0.41 -0.18 16 30 H 0.09 2.04 5.76 -51.88 -0.30 1.75 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.07 8.11 -51.93 -0.42 0.65 16 33 H 0.07 1.35 5.38 -51.93 -0.28 1.07 16 34 H 0.05 0.60 8.06 -51.93 -0.42 0.19 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.70 7.93 -51.30 -0.41 0.29 16 38 H 0.05 0.62 7.61 -51.29 -0.39 0.23 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.04 0.53 8.10 -51.93 -0.42 0.11 16 41 H 0.08 1.33 5.32 -51.93 -0.28 1.05 16 42 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 1.14 5.84 -51.94 -0.30 0.83 16 46 H 0.02 0.30 7.94 -51.95 -0.41 -0.11 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -27.95 335.52 -8.23 -36.18 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -8.77 Total: -2.32 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 0.54 Total: -19.44 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.03 Total: -36.27 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.95 -8.23 -36.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411538962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.126 kcal (2) G-P(sol) polarization free energy of solvation -27.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds