Wall clock time and date at job start Sun Mar 29 2020 23:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47082 * 2 1 4 4 C 1.52999 * 109.46782 * 119.99192 * 2 1 3 5 5 C 1.50699 * 109.47125 * 63.47464 * 4 2 1 6 6 H 1.08001 * 119.99811 * 5.11109 * 5 4 2 7 7 C 1.37883 * 120.00408 * 185.11094 * 5 4 2 8 8 N 1.31512 * 119.99441 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00347 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47134 * 59.99659 * 9 7 5 11 11 H 1.48497 * 109.47109 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46813 * 299.99883 * 9 7 5 13 13 N 1.46901 * 109.47390 * 239.99250 * 2 1 3 14 14 C 1.46884 * 110.97106 * 182.71535 * 13 2 1 15 15 C 1.52673 * 109.84456 * 171.42752 * 14 13 2 16 16 C 1.53183 * 109.60533 * 288.15785 * 15 14 13 17 17 C 1.54229 * 107.92885 * 171.16338 * 15 14 13 18 18 C 1.51981 * 112.21393 * 51.91577 * 15 14 13 19 19 C 1.52059 * 115.19660 * 318.89325 * 18 15 14 20 20 C 1.53069 * 111.09865 * 279.41104 * 19 18 15 21 21 C 1.54141 * 108.39949 * 161.07048 * 19 18 15 22 22 C 1.47033 * 110.89435 * 61.05630 * 13 2 1 23 23 H 1.08998 * 109.47229 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47278 * 60.00590 * 1 2 3 25 25 H 1.09004 * 109.47499 * 300.00442 * 1 2 3 26 26 H 1.09006 * 109.47004 * 183.46759 * 4 2 1 27 27 H 1.08998 * 109.47846 * 303.47420 * 4 2 1 28 28 H 0.97001 * 119.99560 * 179.97438 * 8 7 5 29 29 H 1.09089 * 109.31138 * 291.69839 * 14 13 2 30 30 H 1.09092 * 109.30459 * 51.13983 * 14 13 2 31 31 H 1.08997 * 109.46731 * 184.49425 * 16 15 14 32 32 H 1.09003 * 109.46868 * 304.48960 * 16 15 14 33 33 H 1.09001 * 109.47234 * 64.48886 * 16 15 14 34 34 H 1.08997 * 109.47535 * 298.29575 * 17 15 14 35 35 H 1.08998 * 109.47314 * 58.30165 * 17 15 14 36 36 H 1.09001 * 109.46957 * 178.29633 * 17 15 14 37 37 H 1.10108 * 108.76346 * 196.58622 * 18 15 14 38 38 H 1.10122 * 108.73537 * 81.13567 * 18 15 14 39 39 H 1.08999 * 109.46837 * 183.95079 * 20 19 18 40 40 H 1.08997 * 109.47474 * 303.94973 * 20 19 18 41 41 H 1.08999 * 109.47015 * 63.95391 * 20 19 18 42 42 H 1.08998 * 109.47247 * 298.83335 * 21 19 18 43 43 H 1.08995 * 109.47376 * 58.83453 * 21 19 18 44 44 H 1.08997 * 109.46852 * 178.83785 * 21 19 18 45 45 H 1.08985 * 109.35751 * 309.73677 * 22 13 2 46 46 H 1.08969 * 109.39645 * 69.69693 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6091 -2.1646 1.2072 6 1 1.1015 -2.5514 0.3359 7 6 1.8628 -2.9915 2.2810 8 7 2.4814 -2.5205 3.3418 9 14 1.3282 -4.7805 2.2291 10 1 1.9896 -5.4619 1.0874 11 1 1.7149 -5.4497 3.4971 12 1 -0.1457 -4.8520 2.0617 13 7 2.0197 -0.6926 -1.1993 14 6 3.4866 -0.7684 -1.2005 15 6 3.9581 -1.6709 -2.3381 16 6 3.6342 -3.1304 -2.0042 17 6 5.4916 -1.5434 -2.4408 18 6 3.3555 -1.2724 -3.6752 19 6 1.8860 -0.8838 -3.6329 20 6 0.9882 -2.1235 -3.6242 21 6 1.5603 -0.0733 -4.9029 22 6 1.5678 -0.0098 -2.4205 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 0.5139 0.8900 26 1 3.1282 -0.6676 1.2810 27 1 1.6267 -0.2444 2.1382 28 1 2.6596 -3.1021 4.0973 29 1 3.8994 0.2327 -1.3329 30 1 3.8276 -1.1733 -0.2467 31 1 4.0421 -3.7795 -2.7790 32 1 4.0770 -3.3900 -1.0425 33 1 2.5531 -3.2602 -1.9533 34 1 5.7556 -0.5127 -2.6774 35 1 5.9442 -1.8254 -1.4902 36 1 5.8591 -2.2023 -3.2276 37 1 3.4801 -2.1069 -4.3826 38 1 3.9319 -0.4286 -4.0855 39 1 -0.0566 -1.8157 -3.6646 40 1 1.2177 -2.7444 -4.4901 41 1 1.1641 -2.6931 -2.7117 42 1 2.1671 0.8320 -4.9218 43 1 1.7791 -0.6757 -5.7845 44 1 0.5044 0.1972 -4.9005 45 1 0.4927 0.1595 -2.3629 46 1 2.0828 0.9461 -2.5123 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411538962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:39 Heat of formation + Delta-G solvation = -37.368051 kcal Electronic energy + Delta-G solvation = -21168.369221 eV Core-core repulsion = 18477.248950 eV Total energy + Delta-G solvation = -2691.120272 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00705 -37.41280 -35.78640 -34.58676 -31.97269 -29.24640 -28.55217 -27.42473 -27.32755 -27.00102 -25.50112 -24.39965 -20.65644 -20.56008 -18.87268 -18.25628 -16.86217 -16.49719 -15.90654 -15.66901 -15.23788 -15.11790 -14.69676 -14.63748 -14.14486 -14.06187 -13.42488 -13.26035 -13.09488 -12.91470 -12.85873 -12.79848 -12.65938 -12.63405 -12.48332 -12.38917 -12.27828 -12.11385 -11.83932 -11.59303 -11.43917 -11.25259 -11.12487 -10.97395 -10.79646 -10.63654 -10.39787 -8.87996 -8.04442 -6.06164 1.42848 1.44669 1.51571 2.50317 3.16277 3.33187 3.74922 3.96882 3.99506 4.16371 4.28285 4.35998 4.41122 4.49778 4.53951 4.66032 4.75538 4.76149 4.84093 4.86557 4.88221 4.93340 4.99327 5.05462 5.10097 5.12115 5.15084 5.18031 5.21713 5.26265 5.30326 5.37355 5.43472 5.47188 5.52707 5.55501 5.65735 5.68354 5.75239 5.89972 5.94916 6.37368 6.51663 6.64203 7.08245 7.58780 9.08357 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.020664 B = 0.008058 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.675496 B = 3473.848958 C = 3779.662752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.091 3.909 3 H 0.011 0.989 4 C 0.033 3.967 5 C -0.470 4.470 6 H 0.068 0.932 7 C -0.006 4.006 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.293 1.293 12 H -0.271 1.271 13 N -0.505 5.505 14 C 0.071 3.929 15 C -0.049 4.049 16 C -0.127 4.127 17 C -0.139 4.139 18 C -0.086 4.086 19 C -0.052 4.052 20 C -0.133 4.133 21 C -0.136 4.136 22 C 0.056 3.944 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.046 0.954 26 H -0.013 1.013 27 H -0.010 1.010 28 H 0.255 0.745 29 H 0.015 0.985 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 3.540 -17.170 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.017 4.017 3 H 0.029 0.971 4 C -0.004 4.004 5 C -0.509 4.509 6 H 0.086 0.914 7 C -0.202 4.202 8 N -0.588 5.588 9 Si 0.773 3.227 10 H -0.196 1.196 11 H -0.219 1.219 12 H -0.196 1.196 13 N -0.229 5.229 14 C -0.058 4.058 15 C -0.050 4.050 16 C -0.184 4.184 17 C -0.197 4.197 18 C -0.123 4.123 19 C -0.053 4.053 20 C -0.190 4.190 21 C -0.194 4.194 22 C -0.072 4.072 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.005 0.995 27 H 0.009 0.991 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.104 2.999 -17.005 17.268 hybrid contribution 0.359 -0.030 1.043 1.104 sum 0.463 2.968 -15.962 16.242 Atomic orbital electron populations 1.21660 0.94005 1.01875 1.00365 1.21555 0.96069 0.92852 0.91221 0.97092 1.19096 0.94076 0.95695 0.91563 1.21320 1.34321 0.94815 1.00397 0.91375 1.25795 0.96395 1.02261 0.95706 1.70100 1.44844 1.37016 1.06844 0.85781 0.78912 0.81206 0.76836 1.19569 1.21950 1.19596 1.62475 1.09054 1.50473 1.00852 1.22056 0.88329 0.96680 0.98687 1.20373 0.95175 0.95074 0.94329 1.21839 1.02045 0.95079 0.99418 1.22162 0.94219 1.01837 1.01493 1.21329 0.94407 1.01434 0.95143 1.20414 0.95037 0.95696 0.94124 1.21868 0.98471 0.97141 1.01484 1.22107 1.01580 0.99422 0.96248 1.22368 1.00429 0.94382 0.90056 0.92772 0.91851 0.93513 0.99494 0.99147 0.93633 0.96703 0.93078 0.92245 0.95601 0.92426 0.92373 0.94028 0.91115 0.91324 0.92041 0.93102 0.92386 0.93111 0.92750 0.91579 0.92301 0.90550 0.95924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.54 8.81 71.98 0.63 -3.90 16 2 C 0.09 3.79 2.29 44.91 0.10 3.89 16 3 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 4 C 0.03 1.72 4.21 29.85 0.13 1.84 16 5 C -0.47 -25.94 7.86 25.60 0.20 -25.74 16 6 H 0.07 3.71 6.88 -2.91 -0.02 3.69 16 7 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 8 N -0.94 -58.41 13.29 21.45 0.28 -58.13 16 9 Si 0.95 45.60 29.54 68.60 2.03 47.63 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 N -0.50 -18.72 3.38 -871.54 -2.94 -21.66 16 14 C 0.07 2.63 3.80 86.20 0.33 2.95 16 15 C -0.05 -1.48 0.76 -52.15 -0.04 -1.52 16 16 C -0.13 -4.25 8.11 72.04 0.58 -3.66 16 17 C -0.14 -3.64 8.13 72.40 0.59 -3.05 16 18 C -0.09 -2.10 3.62 29.95 0.11 -1.99 16 19 C -0.05 -1.29 0.75 -52.15 -0.04 -1.33 16 20 C -0.13 -3.42 8.06 72.01 0.58 -2.84 16 21 C -0.14 -2.56 8.16 72.37 0.59 -1.97 16 22 C 0.06 1.64 3.90 86.21 0.34 1.97 16 23 H 0.05 2.21 6.95 -2.39 -0.02 2.20 16 24 H 0.06 1.95 6.22 -2.38 -0.01 1.93 16 25 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 26 H -0.01 -0.75 6.37 -2.38 -0.02 -0.76 16 27 H -0.01 -0.57 8.14 -2.39 -0.02 -0.58 16 28 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.01 0.54 7.93 -2.34 -0.02 0.52 16 30 H 0.05 2.33 5.76 -2.34 -0.01 2.32 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.02 0.98 8.11 -2.39 -0.02 0.97 16 33 H 0.06 2.11 5.38 -2.39 -0.01 2.10 16 34 H 0.06 1.38 8.06 -2.39 -0.02 1.36 16 35 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.52 7.93 -1.79 -0.01 1.50 16 38 H 0.06 1.36 7.61 -1.79 -0.01 1.35 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 41 H 0.05 1.62 5.32 -2.39 -0.01 1.61 16 42 H 0.05 0.98 8.09 -2.39 -0.02 0.96 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 2.19 5.84 -2.39 -0.01 2.17 16 46 H 0.02 0.66 7.94 -2.40 -0.02 0.64 16 Total: -1.00 -62.10 335.52 4.84 -57.26 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.91 Total: 10.15 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 4.56 Total: -35.25 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -2.66 Total: -79.79 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -62.10 4.84 -57.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411538962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.889 kcal (2) G-P(sol) polarization free energy of solvation -62.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds