Wall clock time and date at job start Sun Mar 29 2020 23:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38312 * 120.45255 * 2 1 4 4 C 1.38865 * 118.51541 * 179.97438 * 3 2 1 5 5 N 1.48001 * 120.33367 * 179.97438 * 4 3 2 6 6 O 1.21805 * 119.99788 * 0.02562 * 5 4 3 7 7 O 1.21796 * 119.99936 * 180.02562 * 5 4 3 8 8 C 1.38077 * 119.33540 * 0.02562 * 4 3 2 9 9 N 1.31930 * 120.86070 * 359.97438 * 8 4 3 10 10 C 1.32488 * 121.61546 * 359.73572 * 9 8 4 11 11 S 1.76199 * 119.71212 * 180.28510 * 10 9 8 12 12 C 1.81391 * 103.00173 * 0.24498 * 11 10 9 13 13 C 1.50700 * 109.47621 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99709 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00461 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99968 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00047 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47240 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.46952 * 119.99628 * 17 15 13 20 20 H 1.48497 * 109.46960 * 239.99352 * 17 15 13 21 21 H 1.09002 * 109.47152 * 89.99830 * 1 2 3 22 22 H 1.09001 * 109.46980 * 329.99930 * 1 2 3 23 23 H 1.09004 * 109.47113 * 209.99911 * 1 2 3 24 24 H 1.08005 * 120.74544 * 359.96125 * 3 2 1 25 25 H 1.07998 * 119.56611 * 180.02562 * 8 4 3 26 26 H 1.08998 * 109.47135 * 300.00265 * 12 11 10 27 27 H 1.09001 * 109.47021 * 59.99747 * 12 11 10 28 28 H 0.97005 * 120.00437 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2080 1.1923 0.0000 4 6 3.5959 1.1454 0.0005 5 7 4.3861 2.3968 0.0000 6 8 3.8193 3.4749 -0.0005 7 8 5.6031 2.3485 0.0000 8 6 4.2313 -0.0805 0.0005 9 7 3.5372 -1.2025 0.0005 10 6 2.2124 -1.1996 0.0057 11 16 1.3357 -2.7280 0.0130 12 6 2.6658 -3.9613 0.0185 13 6 2.0682 -5.3448 0.0244 14 1 0.9954 -5.4696 0.0253 15 6 2.8909 -6.4511 0.0298 16 7 4.1972 -6.2992 0.0293 17 14 2.1500 -8.1659 0.0379 18 1 0.6684 -8.0651 0.0379 19 1 2.5964 -8.9037 -1.1711 20 1 2.5963 -8.8922 1.2539 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5139 23 1 -0.3633 -0.8900 0.5138 24 1 1.6877 2.1388 -0.0006 25 1 5.3105 -0.1214 0.0014 26 1 3.2814 -3.8357 -0.8722 27 1 3.2818 -3.8274 0.9077 28 1 4.7761 -7.0776 0.0327 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413466546.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:54 Heat of formation + Delta-G solvation = 13.889878 kcal Electronic energy + Delta-G solvation = -15578.209116 eV Core-core repulsion = 12723.306137 eV Total energy + Delta-G solvation = -2854.902979 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.051 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.12574 -40.19830 -36.50692 -34.03523 -33.32266 -32.76632 -28.82317 -27.62453 -26.87865 -23.69464 -23.36757 -22.12305 -18.92283 -18.75846 -18.15330 -17.48851 -16.75250 -16.43325 -15.14595 -14.77305 -14.43208 -13.81612 -13.51282 -13.02031 -12.78840 -12.54935 -12.52404 -12.42097 -11.53789 -11.26641 -11.10036 -11.07270 -10.95415 -10.64505 -10.54859 -9.86002 -9.73931 -9.67826 -9.43452 -8.79003 -7.32702 -6.36551 -4.45628 -0.22322 0.86163 1.31262 1.39743 1.82147 3.11559 3.13529 3.21568 3.27157 3.28573 4.19189 4.21474 4.33002 4.45014 4.52627 5.00519 5.07700 5.16049 5.46073 5.48724 5.69774 5.86398 6.04103 6.42745 6.87452 6.98923 7.44284 7.51352 7.71387 7.74512 8.55702 9.19594 10.73779 Molecular weight = 254.05amu Principal moments of inertia in cm(-1) A = 0.037084 B = 0.004841 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.852976 B = 5782.757412 C = 6517.153874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.133 4.133 3 C -0.001 4.001 4 C -0.132 4.132 5 N 0.046 4.954 6 O -0.176 6.176 7 O -0.169 6.169 8 C 0.195 3.805 9 N -0.470 5.470 10 C 0.161 3.839 11 S -0.046 6.046 12 C 0.067 3.933 13 C -0.531 4.531 14 H 0.069 0.931 15 C 0.072 3.928 16 N -0.881 5.881 17 Si 0.909 3.091 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.280 1.280 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.161 0.839 25 H 0.181 0.819 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 11.598 -0.057 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.144 4.144 3 C -0.029 4.029 4 C -0.225 4.225 5 N 0.561 4.439 6 O -0.389 6.389 7 O -0.383 6.383 8 C 0.029 3.971 9 N -0.183 5.183 10 C -0.086 4.086 11 S 0.205 5.795 12 C -0.080 4.080 13 C -0.570 4.570 14 H 0.087 0.913 15 C -0.134 4.134 16 N -0.518 5.518 17 Si 0.735 3.265 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.205 1.205 21 H 0.100 0.900 22 H 0.093 0.907 23 H 0.103 0.897 24 H 0.178 0.822 25 H 0.198 0.802 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.362 9.664 -0.056 11.570 hybrid contribution 1.077 0.479 -0.001 1.179 sum -5.285 10.143 -0.057 11.438 Atomic orbital electron populations 1.20762 0.88269 1.03994 1.03571 1.20510 0.98411 0.90521 1.04922 1.21157 0.90722 0.99986 0.91040 1.22044 0.92775 0.85363 1.22292 1.43392 1.01190 1.02365 0.96995 1.94502 1.73397 1.16630 1.54321 1.94531 0.95606 1.94132 1.54005 1.22859 1.01934 0.84875 0.87467 1.68793 1.06465 1.27240 1.15833 1.24318 0.93015 0.99979 0.91325 1.85632 1.17596 0.93154 1.83143 1.21514 0.91944 0.92025 1.02518 1.20635 0.93653 0.88255 1.54506 0.91320 1.24949 0.94739 0.99580 0.94157 1.69969 1.02752 1.31034 1.48028 0.86269 0.79462 0.82790 0.77985 1.19351 1.20522 1.20530 0.89990 0.90677 0.89655 0.82196 0.80221 0.92757 0.92797 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.60 36.01 0.35 -0.77 15 2 C -0.13 -1.80 5.92 -104.25 -0.62 -2.42 15 3 C 0.00 -0.01 9.34 -39.32 -0.37 -0.38 15 4 C -0.13 -1.92 6.87 -79.78 -0.55 -2.47 15 5 N 0.05 0.69 4.45 34.04 0.15 0.84 15 6 O -0.18 -2.68 18.52 -29.46 -0.55 -3.23 15 7 O -0.17 -2.66 18.46 -29.46 -0.54 -3.20 15 8 C 0.19 3.01 10.71 -17.57 -0.19 2.82 15 9 N -0.47 -8.51 9.43 -12.11 -0.11 -8.62 15 10 C 0.16 2.75 7.00 -16.93 -0.12 2.63 15 11 S -0.05 -0.87 20.05 -107.50 -2.16 -3.02 15 12 C 0.07 1.61 4.96 36.01 0.18 1.79 15 13 C -0.53 -13.82 9.13 -34.44 -0.31 -14.14 15 14 H 0.07 1.74 7.71 -52.48 -0.40 1.34 15 15 C 0.07 1.90 5.46 -17.82 -0.10 1.80 15 16 N -0.88 -24.54 13.29 55.43 0.74 -23.81 15 17 Si 0.91 20.12 29.54 -169.99 -5.02 15.10 15 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 19 H -0.28 -6.14 7.11 56.52 0.40 -5.73 15 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 21 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.07 0.59 8.10 -51.93 -0.42 0.17 15 23 H 0.08 0.94 6.79 -51.93 -0.35 0.59 15 24 H 0.16 1.60 7.69 -52.48 -0.40 1.20 15 25 H 0.18 2.43 7.61 -52.49 -0.40 2.03 15 26 H 0.05 1.41 8.14 -51.92 -0.42 0.99 15 27 H 0.05 1.40 8.14 -51.92 -0.42 0.97 15 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 15 LS Contribution 274.68 15.07 4.14 4.14 Total: -1.00 -28.08 274.68 -7.46 -35.55 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -2.38 Total: -2.62 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -1.73 Total: -11.13 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.77 Total: -31.58 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -1.09 Total: -6.43 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -2.16 Total: -3.02 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.08 -7.46 -35.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413466546.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.438 kcal (2) G-P(sol) polarization free energy of solvation -28.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds