Wall clock time and date at job start Sun Mar 29 2020 23:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38312 * 120.45255 * 2 1 4 4 C 1.38865 * 118.51541 * 179.97438 * 3 2 1 5 5 N 1.48001 * 120.33367 * 179.97438 * 4 3 2 6 6 O 1.21805 * 119.99788 * 0.02562 * 5 4 3 7 7 O 1.21796 * 119.99936 * 180.02562 * 5 4 3 8 8 C 1.38077 * 119.33540 * 0.02562 * 4 3 2 9 9 N 1.31930 * 120.86070 * 359.97438 * 8 4 3 10 10 C 1.32488 * 121.61546 * 359.73572 * 9 8 4 11 11 S 1.76199 * 119.71212 * 180.28510 * 10 9 8 12 12 C 1.81391 * 103.00173 * 0.24498 * 11 10 9 13 13 C 1.50700 * 109.47621 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99709 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00461 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99968 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00047 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47240 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.46952 * 119.99628 * 17 15 13 20 20 H 1.48497 * 109.46960 * 239.99352 * 17 15 13 21 21 H 1.09002 * 109.47152 * 89.99830 * 1 2 3 22 22 H 1.09001 * 109.46980 * 329.99930 * 1 2 3 23 23 H 1.09004 * 109.47113 * 209.99911 * 1 2 3 24 24 H 1.08005 * 120.74544 * 359.96125 * 3 2 1 25 25 H 1.07998 * 119.56611 * 180.02562 * 8 4 3 26 26 H 1.08998 * 109.47135 * 300.00265 * 12 11 10 27 27 H 1.09001 * 109.47021 * 59.99747 * 12 11 10 28 28 H 0.97005 * 120.00437 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2080 1.1923 0.0000 4 6 3.5959 1.1454 0.0005 5 7 4.3861 2.3968 0.0000 6 8 3.8193 3.4749 -0.0005 7 8 5.6031 2.3485 0.0000 8 6 4.2313 -0.0805 0.0005 9 7 3.5372 -1.2025 0.0005 10 6 2.2124 -1.1996 0.0057 11 16 1.3357 -2.7280 0.0130 12 6 2.6658 -3.9613 0.0185 13 6 2.0682 -5.3448 0.0244 14 1 0.9954 -5.4696 0.0253 15 6 2.8909 -6.4511 0.0298 16 7 4.1972 -6.2992 0.0293 17 14 2.1500 -8.1659 0.0379 18 1 0.6684 -8.0651 0.0379 19 1 2.5964 -8.9037 -1.1711 20 1 2.5963 -8.8922 1.2539 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5139 23 1 -0.3633 -0.8900 0.5138 24 1 1.6877 2.1388 -0.0006 25 1 5.3105 -0.1214 0.0014 26 1 3.2814 -3.8357 -0.8722 27 1 3.2818 -3.8274 0.9077 28 1 4.7761 -7.0776 0.0327 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413466546.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:53 Heat of formation + Delta-G solvation = -1.635887 kcal Electronic energy + Delta-G solvation = -15578.882364 eV Core-core repulsion = 12723.306137 eV Total energy + Delta-G solvation = -2855.576227 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.35024 -41.42653 -37.73687 -35.43776 -35.04795 -33.97690 -30.79228 -28.65939 -28.09278 -25.30734 -24.91456 -23.32147 -20.11737 -19.98077 -19.53782 -18.70744 -18.41968 -17.93418 -16.84404 -15.99546 -15.92437 -15.02561 -14.70055 -14.47987 -14.41593 -14.16865 -13.87352 -13.29540 -12.81798 -12.77442 -12.66574 -12.50753 -12.37881 -12.33361 -11.82207 -11.65156 -11.21348 -11.01755 -10.87776 -10.73004 -8.80052 -8.37585 -6.54493 -1.45011 -0.26810 0.07496 0.13723 0.46076 1.39508 1.39643 1.42880 1.55449 2.06595 2.33068 2.97805 3.06694 3.17801 3.29363 3.42774 4.06262 4.09428 4.41965 4.68292 4.74078 4.85452 4.90041 4.97535 5.15025 5.27775 5.49212 5.75986 6.20629 6.47115 6.55003 7.15742 8.74337 Molecular weight = 254.05amu Principal moments of inertia in cm(-1) A = 0.037084 B = 0.004841 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.852976 B = 5782.757412 C = 6517.153874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.115 4.115 3 C 0.013 3.987 4 C -0.125 4.125 5 N 0.045 4.955 6 O -0.154 6.154 7 O -0.192 6.192 8 C 0.183 3.817 9 N -0.506 5.506 10 C 0.135 3.865 11 S -0.022 6.022 12 C 0.067 3.933 13 C -0.546 4.546 14 H 0.074 0.926 15 C 0.017 3.983 16 N -0.921 5.921 17 Si 0.978 3.022 18 H -0.257 1.257 19 H -0.275 1.275 20 H -0.275 1.275 21 H 0.099 0.901 22 H 0.110 0.890 23 H 0.076 0.924 24 H 0.200 0.800 25 H 0.189 0.811 26 H 0.022 0.978 27 H 0.021 0.979 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.501 13.142 -0.079 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.126 4.126 3 C -0.015 4.015 4 C -0.217 4.217 5 N 0.560 4.440 6 O -0.373 6.373 7 O -0.400 6.400 8 C 0.017 3.983 9 N -0.220 5.220 10 C -0.112 4.112 11 S 0.227 5.773 12 C -0.081 4.081 13 C -0.585 4.585 14 H 0.092 0.908 15 C -0.185 4.185 16 N -0.559 5.559 17 Si 0.801 3.199 18 H -0.181 1.181 19 H -0.200 1.200 20 H -0.201 1.201 21 H 0.117 0.883 22 H 0.129 0.871 23 H 0.095 0.905 24 H 0.217 0.783 25 H 0.206 0.794 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.487 11.202 -0.077 14.055 hybrid contribution 1.749 0.283 0.004 1.772 sum -6.738 11.485 -0.073 13.316 Atomic orbital electron populations 1.20933 0.85450 1.05310 1.05028 1.20852 1.00155 0.89093 1.02474 1.21588 0.89755 1.01157 0.88953 1.22151 0.93576 0.84735 1.21238 1.43450 1.01176 1.02477 0.96911 1.94485 1.73245 1.16671 1.52882 1.94556 0.95879 1.94234 1.55362 1.22939 1.02392 0.84859 0.88068 1.68666 1.07565 1.28935 1.16842 1.24344 0.93100 1.00176 0.93594 1.85118 1.14425 0.92538 1.85185 1.21038 0.93461 0.94154 0.99406 1.21032 0.94012 0.89465 1.54007 0.90769 1.25951 0.95058 1.03991 0.93520 1.70099 1.04296 1.32298 1.49221 0.85197 0.79147 0.77470 0.78062 1.18088 1.20042 1.20058 0.88271 0.87109 0.90518 0.78289 0.79443 0.95973 0.96017 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 9.60 71.24 0.68 -1.14 15 2 C -0.12 -2.80 5.92 -19.62 -0.12 -2.91 15 3 C 0.01 0.29 9.34 22.44 0.21 0.50 15 4 C -0.13 -3.38 6.87 36.49 0.25 -3.13 15 5 N 0.04 1.26 4.45 -46.21 -0.21 1.05 15 6 O -0.15 -4.16 18.52 18.88 0.35 -3.81 15 7 O -0.19 -5.87 18.46 18.89 0.35 -5.52 15 8 C 0.18 5.64 10.71 84.64 0.91 6.55 15 9 N -0.51 -18.79 9.43 -192.22 -1.81 -20.60 15 10 C 0.14 4.56 7.00 84.82 0.59 5.15 15 11 S -0.02 -0.84 20.05 -56.49 -1.13 -1.98 15 12 C 0.07 3.42 4.96 71.24 0.35 3.77 15 13 C -0.55 -29.26 9.13 25.60 0.23 -29.03 15 14 H 0.07 3.79 7.71 -2.91 -0.02 3.77 15 15 C 0.02 0.90 5.46 84.65 0.46 1.36 15 16 N -0.92 -53.26 13.29 21.44 0.28 -52.98 15 17 Si 0.98 41.57 29.54 68.60 2.03 43.60 15 18 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15 19 H -0.28 -11.40 7.11 99.48 0.71 -10.70 15 20 H -0.28 -11.41 7.11 99.48 0.71 -10.71 15 21 H 0.10 1.39 8.14 -2.39 -0.02 1.38 15 22 H 0.11 1.11 8.10 -2.39 -0.02 1.09 15 23 H 0.08 1.46 6.79 -2.38 -0.02 1.45 15 24 H 0.20 2.81 7.69 -2.91 -0.02 2.78 15 25 H 0.19 5.24 7.61 -2.91 -0.02 5.21 15 26 H 0.02 1.23 8.14 -2.39 -0.02 1.21 15 27 H 0.02 1.20 8.14 -2.39 -0.02 1.18 15 28 H 0.27 14.59 8.31 -92.70 -0.77 13.82 15 Total: -1.00 -62.89 274.68 4.62 -58.26 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: 1.19 Total: 0.86 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 3.58 Total: -18.88 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -1.73 Total: -72.53 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.70 Total: -9.33 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -1.13 Total: -1.98 kcal Total: -62.89 4.62 -58.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413466546.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.626 kcal (2) G-P(sol) polarization free energy of solvation -62.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds